jar

au.csiro.aehrc.variant-spark : variant-spark_2.11

Maven & Gradle

Jul 09, 2022
138 stars

variant-spark · Genomic variants interpretation toolkit

Table Of Contents

Latest Version

Download au.csiro.aehrc.variant-spark : variant-spark_2.11 JAR file - Latest Versions:

All Versions

Download au.csiro.aehrc.variant-spark : variant-spark_2.11 JAR file - All Versions:

Version Vulnerabilities Size Updated
0.5.x
0.4.x
0.3.x
0.2.x
0.1.x

View Java Class Source Code in JAR file

  1. Download JD-GUI to open JAR file and explore Java source code file (.class .java)
  2. Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window variant-spark_2.11-0.5.0-a0-dev5.jar file.
    Once you open a JAR file, all the java classes in the JAR file will be displayed.

au.csiro.variantspark.tests

├─ au.csiro.variantspark.tests.TestWideDecisionTree.class - [JAR]

├─ au.csiro.variantspark.tests.TestWideKMeans.class - [JAR]

au.csiro.variantspark.cli

├─ au.csiro.variantspark.cli.AnalyzeRFCmd.class - [JAR]

├─ au.csiro.variantspark.cli.BuildVarIndexCmd.class - [JAR]

├─ au.csiro.variantspark.cli.CochranArmanCmd.class - [JAR]

├─ au.csiro.variantspark.cli.ConvertCmd.class - [JAR]

├─ au.csiro.variantspark.cli.FilterCmd.class - [JAR]

├─ au.csiro.variantspark.cli.GenerateFeaturesCmd.class - [JAR]

├─ au.csiro.variantspark.cli.GenerateLabelsCmd.class - [JAR]

├─ au.csiro.variantspark.cli.GenerateLabelsNoiseCmd.class - [JAR]

├─ au.csiro.variantspark.cli.ImportanceCmd.class - [JAR]

├─ au.csiro.variantspark.cli.IndexAccumulatorV2.class - [JAR]

├─ au.csiro.variantspark.cli.NullImportanceCmd.class - [JAR]

├─ au.csiro.variantspark.cli.PairWiseDistanceCmd.class - [JAR]

├─ au.csiro.variantspark.cli.PredictCmd.class - [JAR]

├─ au.csiro.variantspark.cli.TestCmd.class - [JAR]

├─ au.csiro.variantspark.cli.VariantSparkApp.class - [JAR]

├─ au.csiro.variantspark.cli.VcfToLabels.class - [JAR]

├─ au.csiro.variantspark.cli.VersionCmd.class - [JAR]

au.csiro.variantspark.algo.impurity

├─ au.csiro.variantspark.algo.impurity.FastGini.class - [JAR]

├─ au.csiro.variantspark.algo.impurity.GiniImpurityAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.impurity.VarianceImpurityAggregator.class - [JAR]

au.csiro.variantspark.input

├─ au.csiro.variantspark.input.CsvFeatureSource.class - [JAR]

├─ au.csiro.variantspark.input.CsvLabelSource.class - [JAR]

├─ au.csiro.variantspark.input.CsvStdFeatureSource.class - [JAR]

├─ au.csiro.variantspark.input.DefVariantToFeatureConverter.class - [JAR]

├─ au.csiro.variantspark.input.DefaultCSVFormatSpec.class - [JAR]

├─ au.csiro.variantspark.input.DelegatingLineIterator.class - [JAR]

├─ au.csiro.variantspark.input.DisabledImputationStrategy.class - [JAR]

├─ au.csiro.variantspark.input.ExtendedVCFCodec.class - [JAR]

├─ au.csiro.variantspark.input.FeatureSource.class - [JAR]

├─ au.csiro.variantspark.input.HashingLabelSource.class - [JAR]

├─ au.csiro.variantspark.input.HeaderAndVersion.class - [JAR]

├─ au.csiro.variantspark.input.ImputationStrategy.class - [JAR]

├─ au.csiro.variantspark.input.LabelSource.class - [JAR]

├─ au.csiro.variantspark.input.MapAccumulator.class - [JAR]

├─ au.csiro.variantspark.input.Missing.class - [JAR]

├─ au.csiro.variantspark.input.ModeImputationStrategy.class - [JAR]

├─ au.csiro.variantspark.input.ParquetFeatureSource.class - [JAR]

├─ au.csiro.variantspark.input.VCFFeatureSource.class - [JAR]

├─ au.csiro.variantspark.input.VCFSource.class - [JAR]

├─ au.csiro.variantspark.input.VariantToFeatureConverter.class - [JAR]

├─ au.csiro.variantspark.input.ZeroImputationStrategy.class - [JAR]

au.csiro.variantspark.input.generate

├─ au.csiro.variantspark.input.generate.EffectLabelGenerator.class - [JAR]

├─ au.csiro.variantspark.input.generate.NoisyEffectLabelGenerator.class - [JAR]

├─ au.csiro.variantspark.input.generate.OrdinalFeatureGenerator.class - [JAR]

au.csiro.variantspark.work

├─ au.csiro.variantspark.work.AnyValTest.class - [JAR]

├─ au.csiro.variantspark.work.Appl.class - [JAR]

├─ au.csiro.variantspark.work.BitsetTest.class - [JAR]

├─ au.csiro.variantspark.work.BreezeTest.class - [JAR]

├─ au.csiro.variantspark.work.CaseTest.class - [JAR]

├─ au.csiro.variantspark.work.DataSetTest.class - [JAR]

├─ au.csiro.variantspark.work.ImplicitTest.class - [JAR]

├─ au.csiro.variantspark.work.IntTest1.class - [JAR]

├─ au.csiro.variantspark.work.IntTest2.class - [JAR]

├─ au.csiro.variantspark.work.JSONTest.class - [JAR]

├─ au.csiro.variantspark.work.Model.class - [JAR]

├─ au.csiro.variantspark.work.ObjectTest.class - [JAR]

├─ au.csiro.variantspark.work.RandomnesTest.class - [JAR]

├─ au.csiro.variantspark.work.RegexTest.class - [JAR]

├─ au.csiro.variantspark.work.Sampler.class - [JAR]

├─ au.csiro.variantspark.work.Splitable.class - [JAR]

├─ au.csiro.variantspark.work.StreamTest.class - [JAR]

├─ au.csiro.variantspark.work.Test.class - [JAR]

├─ au.csiro.variantspark.work.TestApp.class - [JAR]

├─ au.csiro.variantspark.work.TestMax.class - [JAR]

├─ au.csiro.variantspark.work.VcfReaderTest.class - [JAR]

au.csiro.variantspark.api

├─ au.csiro.variantspark.api.AnalyticsFunctions.class - [JAR]

├─ au.csiro.variantspark.api.CommonPairwiseOperation.class - [JAR]

├─ au.csiro.variantspark.api.ImportanceAnalysis.class - [JAR]

├─ au.csiro.variantspark.api.SqlContextHolder.class - [JAR]

├─ au.csiro.variantspark.api.VSContext.class - [JAR]

├─ au.csiro.variantspark.api.package.class - [JAR]

au.csiro.sparkle.spark

├─ au.csiro.sparkle.spark.AppContext.class - [JAR]

├─ au.csiro.sparkle.spark.SparkTask.class - [JAR]

├─ au.csiro.sparkle.spark.SparkUtils.class - [JAR]

├─ au.csiro.sparkle.spark.SparkleJavaApp.class - [JAR]

au.csiro.variantspark.output

├─ au.csiro.variantspark.output.CSVFeatureSink.class - [JAR]

├─ au.csiro.variantspark.output.CSVFeatureSink2.class - [JAR]

├─ au.csiro.variantspark.output.FeatureSink.class - [JAR]

├─ au.csiro.variantspark.output.ParquetFeatureSink.class - [JAR]

au.csiro.sparkle.common.args4j

├─ au.csiro.sparkle.common.args4j.ArgsApp.class - [JAR]

├─ au.csiro.sparkle.common.args4j.ArgsObjectFactory.class - [JAR]

├─ au.csiro.sparkle.common.args4j.DateOptionHandler.class - [JAR]

├─ au.csiro.sparkle.common.args4j.HasUsage.class - [JAR]

├─ au.csiro.sparkle.common.args4j.IntListOptionHandler.class - [JAR]

├─ au.csiro.sparkle.common.args4j.ObjectOptionHandler.class - [JAR]

├─ au.csiro.sparkle.common.args4j.RegisterHandlers.class - [JAR]

au.csiro.variantspark.stats

├─ au.csiro.variantspark.stats.CochranArmitageTest.class - [JAR]

├─ au.csiro.variantspark.stats.CochranArmitageTestCalculator.class - [JAR]

├─ au.csiro.variantspark.stats.CochranArmitageTestScorer.class - [JAR]

au.csiro.variantspark.algo

├─ au.csiro.variantspark.algo.AggregablePairwiseOperation.class - [JAR]

├─ au.csiro.variantspark.algo.AirVariableSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.ArrayOps.class - [JAR]

├─ au.csiro.variantspark.algo.BatchTreeModel.class - [JAR]

├─ au.csiro.variantspark.algo.ClassficationImpurity.class - [JAR]

├─ au.csiro.variantspark.algo.ClassificationImpurityAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.ClassificationSplitAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.ConfusionAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.DecisionTree.class - [JAR]

├─ au.csiro.variantspark.algo.DecisionTreeModel.class - [JAR]

├─ au.csiro.variantspark.algo.DecisionTreeNode.class - [JAR]

├─ au.csiro.variantspark.algo.DecisionTreeParams.class - [JAR]

├─ au.csiro.variantspark.algo.DefStatefullIndexedSpliterFactory.class - [JAR]

├─ au.csiro.variantspark.algo.DefTreeRepresentationFactory.class - [JAR]

├─ au.csiro.variantspark.algo.DeterministicMerger.class - [JAR]

├─ au.csiro.variantspark.algo.FastSplitterProvider.class - [JAR]

├─ au.csiro.variantspark.algo.GiniImpurity.class - [JAR]

├─ au.csiro.variantspark.algo.Impurity.class - [JAR]

├─ au.csiro.variantspark.algo.ImpurityAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.IndexedSplitAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.IndexedSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.IndexedSplitterFactory.class - [JAR]

├─ au.csiro.variantspark.algo.LeafNode.class - [JAR]

├─ au.csiro.variantspark.algo.LowerTriangMatrix.class - [JAR]

├─ au.csiro.variantspark.algo.Merger.class - [JAR]

├─ au.csiro.variantspark.algo.PairWiseAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.PairwiseOperation.class - [JAR]

├─ au.csiro.variantspark.algo.PredictiveModel.class - [JAR]

├─ au.csiro.variantspark.algo.PredictiveModelWithImportance.class - [JAR]

├─ au.csiro.variantspark.algo.RandomForest.class - [JAR]

├─ au.csiro.variantspark.algo.RandomForestCallback.class - [JAR]

├─ au.csiro.variantspark.algo.RandomForestMember.class - [JAR]

├─ au.csiro.variantspark.algo.RandomForestModel.class - [JAR]

├─ au.csiro.variantspark.algo.RandomForestParams.class - [JAR]

├─ au.csiro.variantspark.algo.RandomizingMergerMurmur3.class - [JAR]

├─ au.csiro.variantspark.algo.RawVarImportanceNormalizer.class - [JAR]

├─ au.csiro.variantspark.algo.RegressionImpurityAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.SmallOrderedTreeFeature.class - [JAR]

├─ au.csiro.variantspark.algo.SplitImpurity.class - [JAR]

├─ au.csiro.variantspark.algo.SplitInfo.class - [JAR]

├─ au.csiro.variantspark.algo.SplitNode.class - [JAR]

├─ au.csiro.variantspark.algo.SplitterProvider.class - [JAR]

├─ au.csiro.variantspark.algo.StandardImportanceNormalizer.class - [JAR]

├─ au.csiro.variantspark.algo.StdContinousTreeFeature.class - [JAR]

├─ au.csiro.variantspark.algo.StdVariableSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.SubsetInfo.class - [JAR]

├─ au.csiro.variantspark.algo.SwitchingIndexedSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.ThresholdIndexedSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.ThresholdIndexesSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.To100ImportanceNormalizer.class - [JAR]

├─ au.csiro.variantspark.algo.ToOneImportanceNormalizer.class - [JAR]

├─ au.csiro.variantspark.algo.TreeFeature.class - [JAR]

├─ au.csiro.variantspark.algo.TreeFeatureRDDFunction.class - [JAR]

├─ au.csiro.variantspark.algo.TreeRepresentationFactory.class - [JAR]

├─ au.csiro.variantspark.algo.VarImportanceNormalizer.class - [JAR]

├─ au.csiro.variantspark.algo.VarSplitInfo.class - [JAR]

├─ au.csiro.variantspark.algo.VariableSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.VotingAggregator.class - [JAR]

├─ au.csiro.variantspark.algo.WideKMeans.class - [JAR]

├─ au.csiro.variantspark.algo.package.class - [JAR]

au.csiro.variantspark.python

├─ au.csiro.variantspark.python.Metadata.class - [JAR]

au.csiro.variantspark.algo.metrics

├─ au.csiro.variantspark.algo.metrics.AtLeastOneSharedAltAlleleCount.class - [JAR]

├─ au.csiro.variantspark.algo.metrics.BitwiseAndPairwiseRevMetric.class - [JAR]

├─ au.csiro.variantspark.algo.metrics.EuclideanPairwiseMetric.class - [JAR]

├─ au.csiro.variantspark.algo.metrics.ManhattanPairwiseMetric.class - [JAR]

├─ au.csiro.variantspark.algo.metrics.MultiPairwiseRevMetric.class - [JAR]

├─ au.csiro.variantspark.algo.metrics.SharedAltAlleleCount.class - [JAR]

au.csiro.variantspark.external

├─ au.csiro.variantspark.external.Forest.class - [JAR]

├─ au.csiro.variantspark.external.Leaf.class - [JAR]

├─ au.csiro.variantspark.external.ModelConverter.class - [JAR]

├─ au.csiro.variantspark.external.Node.class - [JAR]

├─ au.csiro.variantspark.external.OOBInfo.class - [JAR]

├─ au.csiro.variantspark.external.Split.class - [JAR]

├─ au.csiro.variantspark.external.Tree.class - [JAR]

au.csiro.variantspark.hail.methods

├─ au.csiro.variantspark.hail.methods.RFModel.class - [JAR]

au.csiro.variantspark.cli.args

├─ au.csiro.variantspark.cli.args.CSVFeatureSourceFactory.class - [JAR]

├─ au.csiro.variantspark.cli.args.CompositeFeatueSource.class - [JAR]

├─ au.csiro.variantspark.cli.args.CompositeFeatureSourceFactory.class - [JAR]

├─ au.csiro.variantspark.cli.args.FeatureSourceArgs.class - [JAR]

├─ au.csiro.variantspark.cli.args.FeatureSourceFactory.class - [JAR]

├─ au.csiro.variantspark.cli.args.ImportanceArgs.class - [JAR]

├─ au.csiro.variantspark.cli.args.LabelSourceArgs.class - [JAR]

├─ au.csiro.variantspark.cli.args.ModelOutputArgs.class - [JAR]

├─ au.csiro.variantspark.cli.args.ParquetFeatureSourceFactory.class - [JAR]

├─ au.csiro.variantspark.cli.args.RandomForestArgs.class - [JAR]

├─ au.csiro.variantspark.cli.args.SparkArgs.class - [JAR]

├─ au.csiro.variantspark.cli.args.StdCSVFeatureSourceFactory.class - [JAR]

├─ au.csiro.variantspark.cli.args.VCFFeatureSourceFactory.class - [JAR]

au.csiro.variantspark.utils

├─ au.csiro.variantspark.utils.ArraysUtils.class - [JAR]

├─ au.csiro.variantspark.utils.CV.class - [JAR]

├─ au.csiro.variantspark.utils.CanSize.class - [JAR]

├─ au.csiro.variantspark.utils.FactorVariable.class - [JAR]

├─ au.csiro.variantspark.utils.HdfsPath.class - [JAR]

├─ au.csiro.variantspark.utils.IndexedRDDFunction.class - [JAR]

├─ au.csiro.variantspark.utils.IndexedVectorRDDFunction.class - [JAR]

├─ au.csiro.variantspark.utils.MurMur3Hash.class - [JAR]

├─ au.csiro.variantspark.utils.Projector.class - [JAR]

├─ au.csiro.variantspark.utils.RDDProjections.class - [JAR]

├─ au.csiro.variantspark.utils.Sample.class - [JAR]

├─ au.csiro.variantspark.utils.Sampling.class - [JAR]

├─ au.csiro.variantspark.utils.VectorRDDFunction.class - [JAR]

├─ au.csiro.variantspark.utils.package.class - [JAR]

au.csiro.variantspark.metrics

├─ au.csiro.variantspark.metrics.Gini.class - [JAR]

├─ au.csiro.variantspark.metrics.Metrics.class - [JAR]

au.csiro.variantspark.algo.split

├─ au.csiro.variantspark.algo.split.AbstractIndexedSplitterBase.class - [JAR]

├─ au.csiro.variantspark.algo.split.JNaiveContinousIndexedSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.split.JOrderedFastIndexedSplitter.class - [JAR]

├─ au.csiro.variantspark.algo.split.JOrderedIndexedSplitter.class - [JAR]

au.csiro.pbdava.ssparkle.common.utils

├─ au.csiro.pbdava.ssparkle.common.utils.CSVUtils.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.FastUtilConversions.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.LoanUtils.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.Logging.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.Long2DoubleOpenHashMap2Map.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.Long2LongOpenHashMap2Map.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.MiscUtils.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.Prof.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.ReusablePrintStream.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.SerialUtils.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.Timed.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.TimedResult.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.Timer.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.utils.VersionInfo.class - [JAR]

au.csiro.variantspark.data

├─ au.csiro.variantspark.data.Bounded.class - [JAR]

├─ au.csiro.variantspark.data.BoundedNominalVariable.class - [JAR]

├─ au.csiro.variantspark.data.BoundedOrdinalVariable.class - [JAR]

├─ au.csiro.variantspark.data.ByteArrayData.class - [JAR]

├─ au.csiro.variantspark.data.CategoricalType.class - [JAR]

├─ au.csiro.variantspark.data.ContinuousVariable.class - [JAR]

├─ au.csiro.variantspark.data.Data.class - [JAR]

├─ au.csiro.variantspark.data.DataBuilder.class - [JAR]

├─ au.csiro.variantspark.data.DataLike.class - [JAR]

├─ au.csiro.variantspark.data.DefRepresentationFactory.class - [JAR]

├─ au.csiro.variantspark.data.DiscreteVariable.class - [JAR]

├─ au.csiro.variantspark.data.Feature.class - [JAR]

├─ au.csiro.variantspark.data.FeatureBuilder.class - [JAR]

├─ au.csiro.variantspark.data.IntArrayData.class - [JAR]

├─ au.csiro.variantspark.data.NominalVariable.class - [JAR]

├─ au.csiro.variantspark.data.NumericalType.class - [JAR]

├─ au.csiro.variantspark.data.Ordered.class - [JAR]

├─ au.csiro.variantspark.data.OrderedCategoricalType.class - [JAR]

├─ au.csiro.variantspark.data.OrdinalVariable.class - [JAR]

├─ au.csiro.variantspark.data.RepresentationFactory.class - [JAR]

├─ au.csiro.variantspark.data.StdFeature.class - [JAR]

├─ au.csiro.variantspark.data.ToFeature.class - [JAR]

├─ au.csiro.variantspark.data.VariableType.class - [JAR]

├─ au.csiro.variantspark.data.VectorData.class - [JAR]

├─ au.csiro.variantspark.data.package.class - [JAR]

au.csiro.variantspark.cmd

├─ au.csiro.variantspark.cmd.EchoUtils.class - [JAR]

├─ au.csiro.variantspark.cmd.Echoable.class - [JAR]

au.csiro.sparkle.cmd

├─ au.csiro.sparkle.cmd.CmdApp.class - [JAR]

├─ au.csiro.sparkle.cmd.DefaultObjectFactory.class - [JAR]

├─ au.csiro.sparkle.cmd.MultiCmdApp.class - [JAR]

au.csiro.pbdava.ssparkle.spark

├─ au.csiro.pbdava.ssparkle.spark.SparkApp.class - [JAR]

├─ au.csiro.pbdava.ssparkle.spark.SparkUtils.class - [JAR]

au.csiro.pbdava.ssparkle.common.arg4j

├─ au.csiro.pbdava.ssparkle.common.arg4j.AppRunner.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.arg4j.AppRunner2.class - [JAR]

├─ au.csiro.pbdava.ssparkle.common.arg4j.TestArgs.class - [JAR]

au.csiro.sparkle.common

├─ au.csiro.sparkle.common.LoanUtils.class - [JAR]

├─ au.csiro.sparkle.common.ObjectFactory.class - [JAR]

├─ au.csiro.sparkle.common.ObjectProvider.class - [JAR]

├─ au.csiro.sparkle.common.ScalaUtils.class - [JAR]

├─ au.csiro.sparkle.common.ThrowingConsumer.class - [JAR]

├─ au.csiro.sparkle.common.ThrowingFunction.class - [JAR]