Group: bio.singa - All Dependencies

The chemistry package of SiNGA handles aspects that range into chemoinformatics, such as parsing and manipulation of chemical entities as well as their annotation with features.

The SiNGA mathematics package handles most of the algorithms and data structures with mathematical background. Amongst others: affinity propagation, graph isomorphism, or voronoi diagram creation.

The features package of SiNGA allows for automated retrieval and annotation of features to arbitrary data structures. This package also provides common units for biological features as well as common identifier patterns for biological databases.

The SiNGA core package contains some convenience methods and data structures required in most other SiNGA packages.

The javafx package of SiNGA provides methods to render visual representations SiNGA data structures in javafx contexts.

singa-all · SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.