Group: se.lth.immun - All Dependencies

se.lth.immun:Xml · Library for common Xml operations

se.lth.immun:Proteins · Library for general purpose in silico chemistry, mainly intended for mass spectrometry proteomics computations.

se.lth.immun:MsNumpress · Set of numerical compression algorithms called MS-Numpress. Give near-lossless compression down to 2e-4 or 2e-9 depending on datatype

se.lth.immun:Math · Maths library. No longer maintained. Avoid. Use something else. Submitted for compatibility reasons.

se.lth.immun:Signal · Code for data smoothing and signal processing. Intended for mass spectrometry proteomics application.

se.lth.immun:SalvatorDenoise · Code for MS data smoothing and noise rejection by Wavelet filters. Based of work by Salvatore Cappadona.

se.lth.immun:Proteomics · Library related to the Proteins library. Probably deprecated or redundant. Included for backwards compatibility

se.lth.immun:MarkovChain · Library for fast markov chain computations using dynamic programming tables

se.lth.immun:Collections · Special purpose data collections, implemented in scala

se.lth.immun:MSFragmentationProtocol · Proto-buf based protocol for storing MS fragmentation data.

se.lth.immun:MSFeatureProtocol · Protocol for proto-buf based binary MS feature (isotope pattern) data.

se.lth.immun:MSDataProtocol · Small protocol for transfering MS data.

se.lth.immun:XLink · Scala library for the representation of crosslinked peptides. Extends se.lth.immun.Proteins.

se.lth.immun:UniMod · Java implementation of the UniMod database of protein modifications. Extends se.lth.immun.Proteins.

se.lth.immun:MsNumpressCollections · Library of MS-Numpress backed collections. I hoped for higher performance because of smaller memory footprint, but was dissapointed.

se.lth.immun:IRT · Functionality for computation of retention time normalization maps, and plotting of the generated maps

se.lth.immun:Graphs · Graphs library

se.lth.immun:Files · Utility classes for path manipulation

se.lth.immun:Xml · Library for TraML

se.lth.immun:MzML · Fast sequential library for reading MzML. Handles all regular variants of the standard mzML format including .gz and numpress

se.lth.immun:MsFragmentationIO · Scala io functionality for reading and writing proto-buf based binary MS fragmentation data.

se.lth.immun:MsFeatureIO · IO functionality for reading and writing proto-buf based binary MS feature (isotope pattern) data.

se.lth.immun:DianaLib · Library for performing the DIANA DIA-MS targeted analysis.

se.lth.immun:MSDataProtocolActors · Akka Actor based library for for sending and receiving MSDataProtocol data.