View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window SnpEff-4.3.1.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.snpeff.svg
├─ org.snpeff.svg.Svg.class - [JAR]
├─ org.snpeff.svg.SvgBnd.class - [JAR]
├─ org.snpeff.svg.SvgCds.class - [JAR]
├─ org.snpeff.svg.SvgExon.class - [JAR]
├─ org.snpeff.svg.SvgGene.class - [JAR]
├─ org.snpeff.svg.SvgIntron.class - [JAR]
├─ org.snpeff.svg.SvgNextProt.class - [JAR]
├─ org.snpeff.svg.SvgScale.class - [JAR]
├─ org.snpeff.svg.SvgSpacer.class - [JAR]
├─ org.snpeff.svg.SvgTranscript.class - [JAR]
├─ org.snpeff.svg.SvgTranslocation.class - [JAR]
org.snpeff.reactome.events
├─ org.snpeff.reactome.events.BlackBoxEvent.class - [JAR]
├─ org.snpeff.reactome.events.CatalystActivity.class - [JAR]
├─ org.snpeff.reactome.events.Complex.class - [JAR]
├─ org.snpeff.reactome.events.Depolymerisation.class - [JAR]
├─ org.snpeff.reactome.events.Event.class - [JAR]
├─ org.snpeff.reactome.events.Pathway.class - [JAR]
├─ org.snpeff.reactome.events.Polymerisation.class - [JAR]
├─ org.snpeff.reactome.events.Reaction.class - [JAR]
org.snpeff.pdb
├─ org.snpeff.pdb.DistanceResult.class - [JAR]
├─ org.snpeff.pdb.IdMapper.class - [JAR]
├─ org.snpeff.pdb.IdMapperEntry.class - [JAR]
├─ org.snpeff.pdb.PdbFile.class - [JAR]
org.snpeff.vcf
├─ org.snpeff.vcf.EffFormatVersion.class - [JAR]
├─ org.snpeff.vcf.FileIndexChrPos.class - [JAR]
├─ org.snpeff.vcf.LineChrPos.class - [JAR]
├─ org.snpeff.vcf.Pedigree.class - [JAR]
├─ org.snpeff.vcf.PedigreeEntry.class - [JAR]
├─ org.snpeff.vcf.VariantVcfEntry.class - [JAR]
├─ org.snpeff.vcf.VcfConsequence.class - [JAR]
├─ org.snpeff.vcf.VcfConsequenceHeader.class - [JAR]
├─ org.snpeff.vcf.VcfEffect.class - [JAR]
├─ org.snpeff.vcf.VcfEntry.class - [JAR]
├─ org.snpeff.vcf.VcfGenotype.class - [JAR]
├─ org.snpeff.vcf.VcfHeader.class - [JAR]
├─ org.snpeff.vcf.VcfHeaderEntry.class - [JAR]
├─ org.snpeff.vcf.VcfHeaderFormat.class - [JAR]
├─ org.snpeff.vcf.VcfHeaderInfo.class - [JAR]
├─ org.snpeff.vcf.VcfInfoType.class - [JAR]
├─ org.snpeff.vcf.VcfLof.class - [JAR]
├─ org.snpeff.vcf.VcfNmd.class - [JAR]
org.snpeff.filter
├─ org.snpeff.filter.Filter.class - [JAR]
├─ org.snpeff.filter.VariantEffectFilter.class - [JAR]
org.snpeff.reactome
├─ org.snpeff.reactome.Compartment.class - [JAR]
├─ org.snpeff.reactome.Entity.class - [JAR]
├─ org.snpeff.reactome.GeneIds.class - [JAR]
├─ org.snpeff.reactome.Monitor.class - [JAR]
├─ org.snpeff.reactome.Reactome.class - [JAR]
org.snpeff.outputFormatter
├─ org.snpeff.outputFormatter.BedAnnotationOutputFormatter.class - [JAR]
├─ org.snpeff.outputFormatter.BedOutputFormatter.class - [JAR]
├─ org.snpeff.outputFormatter.OutputFormatter.class - [JAR]
├─ org.snpeff.outputFormatter.VcfOutputFormatter.class - [JAR]
org.snpeff.snpEffect.commandLine
├─ org.snpeff.snpEffect.commandLine.CommandLine.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdAcat.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdBuild.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdBuildNextProt.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdCds.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdClosest.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdCount.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdDatabases.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdDump.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdEff.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdGenes2Bed.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdGsa.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdLen.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdPdb.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdProtein.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdSeq.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdShow.class - [JAR]
├─ org.snpeff.snpEffect.commandLine.SnpEffCmdTranslocationsReport.class - [JAR]
org.snpeff.sam
├─ org.snpeff.sam.SamEntry.class - [JAR]
├─ org.snpeff.sam.SamHeader.class - [JAR]
├─ org.snpeff.sam.SamHeaderRecord.class - [JAR]
├─ org.snpeff.sam.SamHeaderRecordSq.class - [JAR]
org.snpeff.fileIterator.microCosm
├─ org.snpeff.fileIterator.microCosm.MicroCosmEntry.class - [JAR]
├─ org.snpeff.fileIterator.microCosm.MicroCosmFileIterator.class - [JAR]
org.snpeff.snpEffect.factory
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactory.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryEmbl.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryFeatures.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGenBank.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGenesFile.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGff.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGff2.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGff3.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryGtf22.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryKnownGene.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryRand.class - [JAR]
├─ org.snpeff.snpEffect.factory.SnpEffPredictorFactoryRefSeq.class - [JAR]
org.snpeff.nmer
├─ org.snpeff.nmer.Nmer.class - [JAR]
├─ org.snpeff.nmer.NmerCount.class - [JAR]
├─ org.snpeff.nmer.NmerCountWc.class - [JAR]
org.snpeff.complexity
├─ org.snpeff.complexity.SequenceComplexity.class - [JAR]
org.snpeff.overlap
├─ org.snpeff.overlap.BasesChangeCounter.class - [JAR]
├─ org.snpeff.overlap.Overlap.class - [JAR]
├─ org.snpeff.overlap.OverlapDnaSeq.class - [JAR]
├─ org.snpeff.overlap.SequenceRotator.class - [JAR]
org.snpeff.probablility
├─ org.snpeff.probablility.Binomial.class - [JAR]
├─ org.snpeff.probablility.CochranArmitageTest.class - [JAR]
├─ org.snpeff.probablility.FisherExactTest.class - [JAR]
├─ org.snpeff.probablility.Hypergeometric.class - [JAR]
├─ org.snpeff.probablility.NormalDistribution.class - [JAR]
├─ org.snpeff.probablility.RandMarker.class - [JAR]
├─ org.snpeff.probablility.RankSumNoReplacementPdf.class - [JAR]
├─ org.snpeff.probablility.RankSumNoReplacementSimulate.class - [JAR]
├─ org.snpeff.probablility.RankSumPdf.class - [JAR]
org.snpeff.stats
├─ org.snpeff.stats.AlleleCountStats.class - [JAR]
├─ org.snpeff.stats.Average.class - [JAR]
├─ org.snpeff.stats.AverageInt.class - [JAR]
├─ org.snpeff.stats.BooleanMutable.class - [JAR]
├─ org.snpeff.stats.ChrPosStats.class - [JAR]
├─ org.snpeff.stats.CountByKey.class - [JAR]
├─ org.snpeff.stats.CountByType.class - [JAR]
├─ org.snpeff.stats.Counter.class - [JAR]
├─ org.snpeff.stats.CounterDouble.class - [JAR]
├─ org.snpeff.stats.CoverageByType.class - [JAR]
├─ org.snpeff.stats.FloatStats.class - [JAR]
├─ org.snpeff.stats.GeneCountByTypeTable.class - [JAR]
├─ org.snpeff.stats.GenotypeStats.class - [JAR]
├─ org.snpeff.stats.HomHetStats.class - [JAR]
├─ org.snpeff.stats.IntStats.class - [JAR]
├─ org.snpeff.stats.MineMarkerIntervals.class - [JAR]
├─ org.snpeff.stats.MineTwoMarkerIntervals.class - [JAR]
├─ org.snpeff.stats.ObservedOverExpected.class - [JAR]
├─ org.snpeff.stats.ObservedOverExpectedCHG.class - [JAR]
├─ org.snpeff.stats.ObservedOverExpectedCHH.class - [JAR]
├─ org.snpeff.stats.ObservedOverExpectedCpG.class - [JAR]
├─ org.snpeff.stats.PosStats.class - [JAR]
├─ org.snpeff.stats.ReadsOnMarkersModel.class - [JAR]
├─ org.snpeff.stats.SamplingStats.class - [JAR]
├─ org.snpeff.stats.StatsProcedure.class - [JAR]
├─ org.snpeff.stats.TranslocationReport.class - [JAR]
├─ org.snpeff.stats.TsTvStats.class - [JAR]
├─ org.snpeff.stats.VariantEffectStats.class - [JAR]
├─ org.snpeff.stats.VariantStats.class - [JAR]
├─ org.snpeff.stats.VariantTypeStats.class - [JAR]
├─ org.snpeff.stats.VcfStats.class - [JAR]
org.snpeff.gtex
├─ org.snpeff.gtex.Gtex.class - [JAR]
├─ org.snpeff.gtex.GtexExperiment.class - [JAR]
├─ org.snpeff.gtex.IdMap.class - [JAR]
org.snpeff.ped
├─ org.snpeff.ped.PedEntry.class - [JAR]
├─ org.snpeff.ped.PedFamily.class - [JAR]
├─ org.snpeff.ped.PedFileIterator.class - [JAR]
├─ org.snpeff.ped.PedGenotype.class - [JAR]
├─ org.snpeff.ped.PedPedigree.class - [JAR]
├─ org.snpeff.ped.PlinkMap.class - [JAR]
├─ org.snpeff.ped.Sex.class - [JAR]
├─ org.snpeff.ped.TfamEntry.class - [JAR]
org.snpeff.gsa
├─ org.snpeff.gsa.ChrPosScoreList.class - [JAR]
├─ org.snpeff.gsa.PvaluesList.class - [JAR]
├─ org.snpeff.gsa.ScoreList.class - [JAR]
org.broad.igv.bbfile
├─ org.broad.igv.bbfile.BBCompressionUtils.class - [JAR]
├─ org.broad.igv.bbfile.BBFileHeader.class - [JAR]
├─ org.broad.igv.bbfile.BBFileReader.class - [JAR]
├─ org.broad.igv.bbfile.BBTotalSummaryBlock.class - [JAR]
├─ org.broad.igv.bbfile.BBZoomLevelFormat.class - [JAR]
├─ org.broad.igv.bbfile.BBZoomLevelHeader.class - [JAR]
├─ org.broad.igv.bbfile.BBZoomLevels.class - [JAR]
├─ org.broad.igv.bbfile.BPTree.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeChildNode.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeChildNodeItem.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeHeader.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeLeafNode.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeLeafNodeItem.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeNode.class - [JAR]
├─ org.broad.igv.bbfile.BPTreeNodeItem.class - [JAR]
├─ org.broad.igv.bbfile.BedFeature.class - [JAR]
├─ org.broad.igv.bbfile.BigBedDataBlock.class - [JAR]
├─ org.broad.igv.bbfile.BigBedIterator.class - [JAR]
├─ org.broad.igv.bbfile.BigWigDataBlock.class - [JAR]
├─ org.broad.igv.bbfile.BigWigIterator.class - [JAR]
├─ org.broad.igv.bbfile.BigWigSection.class - [JAR]
├─ org.broad.igv.bbfile.BigWigSectionHeader.class - [JAR]
├─ org.broad.igv.bbfile.RPChromosomeRegion.class - [JAR]
├─ org.broad.igv.bbfile.RPTree.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeChildNode.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeChildNodeItem.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeHeader.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeLeafNode.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeLeafNodeItem.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeNode.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeNodeItem.class - [JAR]
├─ org.broad.igv.bbfile.RPTreeNodeProxy.class - [JAR]
├─ org.broad.igv.bbfile.WigItem.class - [JAR]
├─ org.broad.igv.bbfile.ZoomDataBlock.class - [JAR]
├─ org.broad.igv.bbfile.ZoomDataRecord.class - [JAR]
├─ org.broad.igv.bbfile.ZoomLevelIterator.class - [JAR]
org.snpeff.interval.tree
├─ org.snpeff.interval.tree.IntervalForest.class - [JAR]
├─ org.snpeff.interval.tree.IntervalNode.class - [JAR]
├─ org.snpeff.interval.tree.IntervalNodeOri.class - [JAR]
├─ org.snpeff.interval.tree.IntervalTree.class - [JAR]
├─ org.snpeff.interval.tree.IntervalTreeArray.class - [JAR]
├─ org.snpeff.interval.tree.IntervalTreeOri.class - [JAR]
├─ org.snpeff.interval.tree.Itree.class - [JAR]
org.snpeff.snpEffect
├─ org.snpeff.snpEffect.Config.class - [JAR]
├─ org.snpeff.snpEffect.EffectType.class - [JAR]
├─ org.snpeff.snpEffect.Hgvs.class - [JAR]
├─ org.snpeff.snpEffect.HgvsDna.class - [JAR]
├─ org.snpeff.snpEffect.HgvsProtein.class - [JAR]
├─ org.snpeff.snpEffect.IntHisto.class - [JAR]
├─ org.snpeff.snpEffect.LossOfFunction.class - [JAR]
├─ org.snpeff.snpEffect.PurityChange.class - [JAR]
├─ org.snpeff.snpEffect.SnpEffectPredictor.class - [JAR]
├─ org.snpeff.snpEffect.VariantEffect.class - [JAR]
├─ org.snpeff.snpEffect.VariantEffectFusion.class - [JAR]
├─ org.snpeff.snpEffect.VariantEffectStructural.class - [JAR]
├─ org.snpeff.snpEffect.VariantEffects.class - [JAR]
├─ org.snpeff.snpEffect.VcfAnnotator.class - [JAR]
├─ org.snpeff.snpEffect.VcfAnnotatorChain.class - [JAR]
org.snpeff.binseq.indexer
├─ org.snpeff.binseq.indexer.OverlapFilter.class - [JAR]
├─ org.snpeff.binseq.indexer.OverlapFilterCompareAllAll.class - [JAR]
├─ org.snpeff.binseq.indexer.OverlapFilterDnaId.class - [JAR]
├─ org.snpeff.binseq.indexer.OverlapRessult.class - [JAR]
├─ org.snpeff.binseq.indexer.SequenceIndexer.class - [JAR]
├─ org.snpeff.binseq.indexer.SuffixIndexerNmer.class - [JAR]
net.sf.samtools.tabix
├─ net.sf.samtools.tabix.TPair64.class - [JAR]
├─ net.sf.samtools.tabix.TabixIndex.class - [JAR]
├─ net.sf.samtools.tabix.TabixInterval.class - [JAR]
├─ net.sf.samtools.tabix.TabixIterator.class - [JAR]
├─ net.sf.samtools.tabix.TabixReader.class - [JAR]
org.snpeff.interval
├─ org.snpeff.interval.BioType.class - [JAR]
├─ org.snpeff.interval.Cds.class - [JAR]
├─ org.snpeff.interval.Chromosome.class - [JAR]
├─ org.snpeff.interval.ChromosomeSimpleName.class - [JAR]
├─ org.snpeff.interval.CircularCorrection.class - [JAR]
├─ org.snpeff.interval.CodonPosition.class - [JAR]
├─ org.snpeff.interval.Custom.class - [JAR]
├─ org.snpeff.interval.CytoBands.class - [JAR]
├─ org.snpeff.interval.Downstream.class - [JAR]
├─ org.snpeff.interval.Exon.class - [JAR]
├─ org.snpeff.interval.ExonSpliceCharacterizer.class - [JAR]
├─ org.snpeff.interval.FrameType.class - [JAR]
├─ org.snpeff.interval.Gene.class - [JAR]
├─ org.snpeff.interval.GenericMarker.class - [JAR]
├─ org.snpeff.interval.Genes.class - [JAR]
├─ org.snpeff.interval.Genome.class - [JAR]
├─ org.snpeff.interval.GffMarker.class - [JAR]
├─ org.snpeff.interval.GffType.class - [JAR]
├─ org.snpeff.interval.Gtf2Marker.class - [JAR]
├─ org.snpeff.interval.Intergenic.class - [JAR]
├─ org.snpeff.interval.IntergenicConserved.class - [JAR]
├─ org.snpeff.interval.Interval.class - [JAR]
├─ org.snpeff.interval.IntervalAndSubIntervals.class - [JAR]
├─ org.snpeff.interval.IntervalComparatorByEnd.class - [JAR]
├─ org.snpeff.interval.IntervalComparatorByStart.class - [JAR]
├─ org.snpeff.interval.IntervalSetIterator.class - [JAR]
├─ org.snpeff.interval.Intron.class - [JAR]
├─ org.snpeff.interval.IntronConserved.class - [JAR]
├─ org.snpeff.interval.Marker.class - [JAR]
├─ org.snpeff.interval.MarkerParentId.class - [JAR]
├─ org.snpeff.interval.MarkerSeq.class - [JAR]
├─ org.snpeff.interval.MarkerUtil.class - [JAR]
├─ org.snpeff.interval.MarkerWithFrame.class - [JAR]
├─ org.snpeff.interval.Markers.class - [JAR]
├─ org.snpeff.interval.MicroRnaBindingSite.class - [JAR]
├─ org.snpeff.interval.Motif.class - [JAR]
├─ org.snpeff.interval.NextProt.class - [JAR]
├─ org.snpeff.interval.ProteinInteractionLocus.class - [JAR]
├─ org.snpeff.interval.ProteinProteinInteractionLocus.class - [JAR]
├─ org.snpeff.interval.ProteinStructuralInteractionLocus.class - [JAR]
├─ org.snpeff.interval.RareAminoAcid.class - [JAR]
├─ org.snpeff.interval.Regulation.class - [JAR]
├─ org.snpeff.interval.SpliceSite.class - [JAR]
├─ org.snpeff.interval.SpliceSiteAcceptor.class - [JAR]
├─ org.snpeff.interval.SpliceSiteBranch.class - [JAR]
├─ org.snpeff.interval.SpliceSiteBranchU12.class - [JAR]
├─ org.snpeff.interval.SpliceSiteDonor.class - [JAR]
├─ org.snpeff.interval.SpliceSiteRegion.class - [JAR]
├─ org.snpeff.interval.Transcript.class - [JAR]
├─ org.snpeff.interval.TranscriptSupportLevel.class - [JAR]
├─ org.snpeff.interval.Upstream.class - [JAR]
├─ org.snpeff.interval.Utr.class - [JAR]
├─ org.snpeff.interval.Utr3prime.class - [JAR]
├─ org.snpeff.interval.Utr5prime.class - [JAR]
├─ org.snpeff.interval.Variant.class - [JAR]
├─ org.snpeff.interval.VariantBnd.class - [JAR]
├─ org.snpeff.interval.VariantNonRef.class - [JAR]
├─ org.snpeff.interval.VariantWithScore.class - [JAR]
org.snpeff.binseq
├─ org.snpeff.binseq.BinarySequence.class - [JAR]
├─ org.snpeff.binseq.DnaAndQualitySequence.class - [JAR]
├─ org.snpeff.binseq.DnaAndQualitySequenceWithId.class - [JAR]
├─ org.snpeff.binseq.DnaNSequence.class - [JAR]
├─ org.snpeff.binseq.DnaSequence.class - [JAR]
├─ org.snpeff.binseq.DnaSequenceByte.class - [JAR]
├─ org.snpeff.binseq.DnaSequenceId.class - [JAR]
├─ org.snpeff.binseq.DnaSequencePe.class - [JAR]
├─ org.snpeff.binseq.GenomicSequences.class - [JAR]
├─ org.snpeff.binseq.IdGenerator.class - [JAR]
org.snpeff.motif
├─ org.snpeff.motif.BaseSize.class - [JAR]
├─ org.snpeff.motif.Jaspar.class - [JAR]
├─ org.snpeff.motif.MotifLogo.class - [JAR]
├─ org.snpeff.motif.Pwm.class - [JAR]
├─ org.snpeff.motif.PwmAndSeqs.class - [JAR]
org.snpeff.genotypes
├─ org.snpeff.genotypes.GenotypeVector.class - [JAR]
├─ org.snpeff.genotypes.Genotypes.class - [JAR]
org.snpeff.geneOntology
├─ org.snpeff.geneOntology.CompareByValue.class - [JAR]
├─ org.snpeff.geneOntology.GoTerm.class - [JAR]
├─ org.snpeff.geneOntology.GoTerms.class - [JAR]
org.snpeff.osCmd
├─ org.snpeff.osCmd.ExecuteOsCommand.class - [JAR]
├─ org.snpeff.osCmd.LineFilter.class - [JAR]
├─ org.snpeff.osCmd.OsCmdQueue.class - [JAR]
├─ org.snpeff.osCmd.OsCmdRunner.class - [JAR]
├─ org.snpeff.osCmd.Progress.class - [JAR]
├─ org.snpeff.osCmd.StreamGobbler.class - [JAR]
org.snpeff.binseq.coder
├─ org.snpeff.binseq.coder.Coder.class - [JAR]
├─ org.snpeff.binseq.coder.DnaCoder.class - [JAR]
├─ org.snpeff.binseq.coder.DnaQualityCoder.class - [JAR]
org.snpeff.genBank
├─ org.snpeff.genBank.Embl.class - [JAR]
├─ org.snpeff.genBank.EmblFile.class - [JAR]
├─ org.snpeff.genBank.Feature.class - [JAR]
├─ org.snpeff.genBank.FeatureCoordinates.class - [JAR]
├─ org.snpeff.genBank.Features.class - [JAR]
├─ org.snpeff.genBank.FeaturesFile.class - [JAR]
├─ org.snpeff.genBank.GenBank.class - [JAR]
├─ org.snpeff.genBank.GenBankFile.class - [JAR]
org.snpeff
├─ org.snpeff.Fastq2Fastq.class - [JAR]
├─ org.snpeff.Pcingola.class - [JAR]
├─ org.snpeff.PromoterSequences.class - [JAR]
├─ org.snpeff.Qseq2Fastq.class - [JAR]
├─ org.snpeff.Qseq2FastqSplit.class - [JAR]
├─ org.snpeff.RegulationConsensusMultipleBed.class - [JAR]
├─ org.snpeff.RegulationFileConsensus.class - [JAR]
├─ org.snpeff.RegulationFileSplitBytType.class - [JAR]
├─ org.snpeff.SnpEff.class - [JAR]
org.snpeff.binseq.comparator
├─ org.snpeff.binseq.comparator.DnaQualSubsequenceComparator.class - [JAR]
├─ org.snpeff.binseq.comparator.DnaSubsequenceComparator.class - [JAR]
├─ org.snpeff.binseq.comparator.SequenceReference.class - [JAR]
├─ org.snpeff.binseq.comparator.SubsequenceComparator.class - [JAR]
org.snpeff.align
├─ org.snpeff.align.NeedlemanWunsch.class - [JAR]
├─ org.snpeff.align.NeedlemanWunschOverlap.class - [JAR]
├─ org.snpeff.align.SmithWaterman.class - [JAR]
├─ org.snpeff.align.VariantRealign.class - [JAR]
├─ org.snpeff.align.VcfRefAltAlign.class - [JAR]
org.snpeff.codons
├─ org.snpeff.codons.CodonTable.class - [JAR]
├─ org.snpeff.codons.CodonTables.class - [JAR]
├─ org.snpeff.codons.FindRareAaIntervals.class - [JAR]
org.snpeff.coverage
├─ org.snpeff.coverage.CountFragments.class - [JAR]
├─ org.snpeff.coverage.CountReads.class - [JAR]
├─ org.snpeff.coverage.CountReadsOnMarkers.class - [JAR]
├─ org.snpeff.coverage.Coverage.class - [JAR]
├─ org.snpeff.coverage.CoverageChr.class - [JAR]
├─ org.snpeff.coverage.MarkerTypes.class - [JAR]
org.snpeff.snpEffect.testCases.integration
├─ org.snpeff.snpEffect.testCases.integration.CompareEffects.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.CompareToEnsembl.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.CompareToVep.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.CreateSpliceSiteTestCase.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.IntegrationTest.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesAnn.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesHgvsBase.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationApply.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBuildPdb.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCancer.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCanonical.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCircularGenome.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCodingTag.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationConfig.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCutsomIntervals.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationDelEtc.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationDup.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationEff.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationEmbl.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationErrors.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationExonFrame.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationFilterTranscripts.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGenBank.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGenomicSequences.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGff3.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationGtf22.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvs.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsDel.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsDnaDup.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsFrameShift.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsHard.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsIns.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsLarge.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsMnps.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsUpDownStream.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationInsEtc.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationInsVep.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationLargeDeletion.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationLof.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMarkerSeq.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMissenseSilentRatio.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMixedVariants.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMnp.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMotif.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNextProt.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNmd.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNoChange.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationProtein.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationProteinInteraction.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationRefSeq.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationRegulation.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSequenceOntology.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnp.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnpEff.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnpEffMultiThread.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnpEnsembl.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSpliceRegion.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationStructural.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationTranscript.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationTranscriptError.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationVariant.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationVcfs.class - [JAR]
├─ org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationZzz.class - [JAR]
org.snpeff.fileIterator
├─ org.snpeff.fileIterator.BedFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.BigBedFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.BinSeqFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.BlastResultEntry.class - [JAR]
├─ org.snpeff.fileIterator.BlastResultFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.DnaSeqFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.DnaSeqIdFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.DnaSeqPeFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.FastaFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.FastqFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.FileIterator.class - [JAR]
├─ org.snpeff.fileIterator.GenericMarkerFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.Gff3FileIterator.class - [JAR]
├─ org.snpeff.fileIterator.GuessTableTypes.class - [JAR]
├─ org.snpeff.fileIterator.LineClassFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.LineFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.LineSeqFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.MarkerFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.MatrixEntry.class - [JAR]
├─ org.snpeff.fileIterator.MatrixEntryFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.MotifFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.NullReader.class - [JAR]
├─ org.snpeff.fileIterator.RegulationBedFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.RegulationFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.RegulationGffFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.SamFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.SeekableBufferedReader.class - [JAR]
├─ org.snpeff.fileIterator.TableFile.class - [JAR]
├─ org.snpeff.fileIterator.VariantFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.VariantTxtFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.VcfFileIterator.class - [JAR]
├─ org.snpeff.fileIterator.VcfHapMapFileIterator.class - [JAR]
org.snpeff.spliceSites
├─ org.snpeff.spliceSites.AcgtTree.class - [JAR]
├─ org.snpeff.spliceSites.SnpEffCmdSpliceAnalysis.class - [JAR]
├─ org.snpeff.spliceSites.SpliceTypes.class - [JAR]
├─ org.snpeff.spliceSites.TranscriptSet.class - [JAR]
org.snpeff.interval.codonChange
├─ org.snpeff.interval.codonChange.CodonChange.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeDel.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeDup.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeIns.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeInterval.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeInv.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeMixed.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeMnp.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeSnp.class - [JAR]
├─ org.snpeff.interval.codonChange.CodonChangeStructural.class - [JAR]
org.snpeff.snpEffect.testCases.unity
├─ org.snpeff.snpEffect.testCases.unity.Save.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesAlign.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesAnnParse.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesApplyDel.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesApplyIns.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesApplyMixed.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesApplyMnp.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesApplySnp.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesBase.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesBaseApply.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesBinomial.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesBuild.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesCds.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesChiSquare.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesCircular.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesCochranArmitage.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesCodonTable.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesCytoBands.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesDel.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesDels.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesDnaNSequence.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesDnaOverlap.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesDnaSequence.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesDnaSequenceByte.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesEffectCollapse.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesEffectCollapse2.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesFasta.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesFileIndexChrPos.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesFisherExactTest.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesGenePvalueList.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesGenomicSequences.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesGenotypeVector.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHgvs.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHgvsDnaDup.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHgvsDnaDupNegative.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHgvsExon.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHgvsIntron.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHgvsProtDup.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesHypergeometric.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIns.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntStats.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntergenic.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntervalTree.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntervalTreeArray.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntervalTreeOri.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntervalVariant.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIntervals.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesIubString.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesJaspar.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesMarkerUtils.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesMnps.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesNmers.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesOverlap.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesProteinInteraction.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesReactome.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesSeekableReader.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesSequenceIndexer.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesSnps.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesSpliceRegion.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesSpliceSite.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesStructuralDel.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesStructuralDup.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesStructuralInv.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesStructuralTranslocations.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesVariantDecompose.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesVariantRealignment.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesVcf.class - [JAR]
├─ org.snpeff.snpEffect.testCases.unity.TestCasesZzz.class - [JAR]
org.snpeff.fileIterator.parser
├─ org.snpeff.fileIterator.parser.Parser.class - [JAR]
org.snpeff.fastq
├─ org.snpeff.fastq.Fastq.class - [JAR]
├─ org.snpeff.fastq.FastqBuilder.class - [JAR]
├─ org.snpeff.fastq.FastqSplit.class - [JAR]
├─ org.snpeff.fastq.FastqTools.class - [JAR]
├─ org.snpeff.fastq.FastqTrimmer.class - [JAR]
├─ org.snpeff.fastq.FastqTrimmerAdrian.class - [JAR]
├─ org.snpeff.fastq.FastqTrimmerMedian.class - [JAR]
├─ org.snpeff.fastq.FastqVariant.class - [JAR]
org.snpeff.geneSets
├─ org.snpeff.geneSets.CompareByValue.class - [JAR]
├─ org.snpeff.geneSets.GeneSet.class - [JAR]
├─ org.snpeff.geneSets.GeneSets.class - [JAR]
├─ org.snpeff.geneSets.GeneSetsRanked.class - [JAR]
├─ org.snpeff.geneSets.GeneStats.class - [JAR]
├─ org.snpeff.geneSets.Result.class - [JAR]
org.snpeff.nextProt
├─ org.snpeff.nextProt.NextProtDb.class - [JAR]
├─ org.snpeff.nextProt.NextProtParser.class - [JAR]
├─ org.snpeff.nextProt.NextProtParserV2.class - [JAR]
├─ org.snpeff.nextProt.TranscriptData.class - [JAR]
org.snpeff.stats.plot
├─ org.snpeff.stats.plot.GoogleBarChart.class - [JAR]
├─ org.snpeff.stats.plot.GoogleChartVenn.class - [JAR]
├─ org.snpeff.stats.plot.GoogleGenePercentBar.class - [JAR]
├─ org.snpeff.stats.plot.GoogleGeneRegionChart.class - [JAR]
├─ org.snpeff.stats.plot.GoogleGeneRegionNumExonsChart.class - [JAR]
├─ org.snpeff.stats.plot.GoogleHistogram.class - [JAR]
├─ org.snpeff.stats.plot.GoogleLineChart.class - [JAR]
├─ org.snpeff.stats.plot.GooglePlot.class - [JAR]
├─ org.snpeff.stats.plot.GooglePlotInt.class - [JAR]
org.snpeff.util
├─ org.snpeff.util.CombinatorialIterator.class - [JAR]
├─ org.snpeff.util.Diff.class - [JAR]
├─ org.snpeff.util.Download.class - [JAR]
├─ org.snpeff.util.Gpr.class - [JAR]
├─ org.snpeff.util.GprHtml.class - [JAR]
├─ org.snpeff.util.GprSeq.class - [JAR]
├─ org.snpeff.util.Iterator2Iterable.class - [JAR]
├─ org.snpeff.util.IubString.class - [JAR]
├─ org.snpeff.util.KeyValue.class - [JAR]
├─ org.snpeff.util.Timer.class - [JAR]
├─ org.snpeff.util.Tuple.class - [JAR]
org.snpeff.geneSets.algorithm
├─ org.snpeff.geneSets.algorithm.EnrichmentAlgorithm.class - [JAR]
├─ org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedy.class - [JAR]
├─ org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedyVariableSize.class - [JAR]
├─ org.snpeff.geneSets.algorithm.FisherPValueAlgorithm.class - [JAR]
├─ org.snpeff.geneSets.algorithm.FisherPValueGreedyAlgorithm.class - [JAR]
├─ org.snpeff.geneSets.algorithm.LeadingEdgeFractionAlgorithm.class - [JAR]
├─ org.snpeff.geneSets.algorithm.NoneAlgorithm.class - [JAR]
├─ org.snpeff.geneSets.algorithm.RankSumPValueAlgorithm.class - [JAR]
├─ org.snpeff.geneSets.algorithm.RankSumPValueGreedyAlgorithm.class - [JAR]
org.snpeff.snpEffect.testCases
├─ org.snpeff.snpEffect.testCases.TestSuiteHgvs.class - [JAR]
├─ org.snpeff.snpEffect.testCases.TestSuiteIntegration.class - [JAR]
├─ org.snpeff.snpEffect.testCases.TestSuiteUnity.class - [JAR]
org.snpeff.serializer
├─ org.snpeff.serializer.MarkerSerializer.class - [JAR]
├─ org.snpeff.serializer.TxtSerializable.class - [JAR]
org.broad.tribble.util
├─ org.broad.tribble.util.LittleEndianInputStream.class - [JAR]
├─ org.broad.tribble.util.SeekableFileStream.class - [JAR]
├─ org.broad.tribble.util.SeekableStream.class - [JAR]
org.snpeff.logStatsServer
├─ org.snpeff.logStatsServer.LogStats.class - [JAR]
├─ org.snpeff.logStatsServer.VersionCheck.class - [JAR]
org.snpeff.probablility.bootstrap
├─ org.snpeff.probablility.bootstrap.ReSampleInt.class - [JAR]
├─ org.snpeff.probablility.bootstrap.ReSampleMap.class - [JAR]
├─ org.snpeff.probablility.bootstrap.ReSampleMapRank.class - [JAR]
org.snpeff.collections
├─ org.snpeff.collections.ArrayUtil.class - [JAR]
├─ org.snpeff.collections.AutoHashMap.class - [JAR]
├─ org.snpeff.collections.BitUtil.class - [JAR]
├─ org.snpeff.collections.HashLongLongArray.class - [JAR]
├─ org.snpeff.collections.MultivalueHashMap.class - [JAR]
├─ org.snpeff.collections.OpenBitSet.class - [JAR]
