View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window dagr-tasks_2.13-1.1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
dagr.tasks.gatk
├─ dagr.tasks.gatk.GatkTask.class - [JAR]
├─ dagr.tasks.gatk.GenotypeGvcfs.class - [JAR]
├─ dagr.tasks.gatk.HaplotypeCaller.class - [JAR]
├─ dagr.tasks.gatk.IndelRealigner.class - [JAR]
├─ dagr.tasks.gatk.IndelRealignment.class - [JAR]
├─ dagr.tasks.gatk.Mutect1.class - [JAR]
├─ dagr.tasks.gatk.Mutect2.class - [JAR]
├─ dagr.tasks.gatk.RealignerTargetCreator.class - [JAR]
├─ dagr.tasks.gatk.SplitIntervalsForCallingRegions.class - [JAR]
├─ dagr.tasks.gatk.SplitNCigarReads.class - [JAR]
dagr.tasks
├─ dagr.tasks.DagrDef.class - [JAR]
├─ dagr.tasks.JarTask.class - [JAR]
├─ dagr.tasks.ScatterGather.class - [JAR]
├─ dagr.tasks.package.class - [JAR]
dagr.tasks.bwa
├─ dagr.tasks.bwa.Bwa.class - [JAR]
├─ dagr.tasks.bwa.BwaAln.class - [JAR]
├─ dagr.tasks.bwa.BwaBacktrack.class - [JAR]
├─ dagr.tasks.bwa.BwaIndex.class - [JAR]
├─ dagr.tasks.bwa.BwaK8AltProcessor.class - [JAR]
├─ dagr.tasks.bwa.BwaMem.class - [JAR]
├─ dagr.tasks.bwa.BwaSampe.class - [JAR]
├─ dagr.tasks.bwa.BwaSamse.class - [JAR]
dagr.tasks.misc
├─ dagr.tasks.misc.CalculateDownsamplingProportion.class - [JAR]
├─ dagr.tasks.misc.DeleteFiles.class - [JAR]
├─ dagr.tasks.misc.DeleteVcfs.class - [JAR]
├─ dagr.tasks.misc.GetNumPfReads.class - [JAR]
├─ dagr.tasks.misc.GetSampleNamesFromVcf.class - [JAR]
├─ dagr.tasks.misc.IndexVcfGz.class - [JAR]
├─ dagr.tasks.misc.MakeDirectory.class - [JAR]
├─ dagr.tasks.misc.MoveFile.class - [JAR]
├─ dagr.tasks.misc.Tabix.class - [JAR]
├─ dagr.tasks.misc.VerifyBamId.class - [JAR]
dagr.tasks.fgbio
├─ dagr.tasks.fgbio.AssignmentStrategy.class - [JAR]
├─ dagr.tasks.fgbio.CallDuplexConsensusReads.class - [JAR]
├─ dagr.tasks.fgbio.CallMolecularConsensusReads.class - [JAR]
├─ dagr.tasks.fgbio.ClipBam.class - [JAR]
├─ dagr.tasks.fgbio.ClipOverlappingReads.class - [JAR]
├─ dagr.tasks.fgbio.CollectDuplexSeqMetrics.class - [JAR]
├─ dagr.tasks.fgbio.CorrectUmis.class - [JAR]
├─ dagr.tasks.fgbio.ErrorRateByReadPosition.class - [JAR]
├─ dagr.tasks.fgbio.ExtractUmisFromBam.class - [JAR]
├─ dagr.tasks.fgbio.FastqToBam.class - [JAR]
├─ dagr.tasks.fgbio.FgBioTask.class - [JAR]
├─ dagr.tasks.fgbio.FilterConsensusReads.class - [JAR]
├─ dagr.tasks.fgbio.FilterSomaticVcf.class - [JAR]
├─ dagr.tasks.fgbio.GroupReadsByUmi.class - [JAR]
├─ dagr.tasks.fgbio.RemoveSamTags.class - [JAR]
├─ dagr.tasks.fgbio.SortBam.class - [JAR]
├─ dagr.tasks.fgbio.TrimFastq.class - [JAR]
├─ dagr.tasks.fgbio.TrimPrimers.class - [JAR]
dagr.tasks.jeanluc
├─ dagr.tasks.jeanluc.FilterBam.class - [JAR]
├─ dagr.tasks.jeanluc.GenerateRegionsFromFasta.class - [JAR]
├─ dagr.tasks.jeanluc.JeanLucTask.class - [JAR]
dagr.tasks.samtools
├─ dagr.tasks.samtools.SamtoolsFaidx.class - [JAR]
├─ dagr.tasks.samtools.SamtoolsPileup.class - [JAR]
├─ dagr.tasks.samtools.SamtoolsTask.class - [JAR]
dagr.tasks.vc
├─ dagr.tasks.vc.FilterFreeBayesCalls.class - [JAR]
├─ dagr.tasks.vc.FreeBayes.class - [JAR]
├─ dagr.tasks.vc.FreeBayesGermline.class - [JAR]
├─ dagr.tasks.vc.FreeBayesParallel.class - [JAR]
├─ dagr.tasks.vc.FreeBayesSomatic.class - [JAR]
├─ dagr.tasks.vc.Strelka.class - [JAR]
├─ dagr.tasks.vc.Var2VcfPaired.class - [JAR]
├─ dagr.tasks.vc.Var2VcfValid.class - [JAR]
├─ dagr.tasks.vc.VarDictJava.class - [JAR]
├─ dagr.tasks.vc.VarDictJavaEndToEnd.class - [JAR]
├─ dagr.tasks.vc.Varscan2.class - [JAR]
├─ dagr.tasks.vc.Varscan2Somatic.class - [JAR]
dagr.tasks.picard
├─ dagr.tasks.picard.AddOrReplaceReadGroups.class - [JAR]
├─ dagr.tasks.picard.BaitDesigner.class - [JAR]
├─ dagr.tasks.picard.BuildBamIndex.class - [JAR]
├─ dagr.tasks.picard.CheckIlluminaDirectory.class - [JAR]
├─ dagr.tasks.picard.CleanSam.class - [JAR]
├─ dagr.tasks.picard.CollectAlignmentSummaryMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectBaseDistributionByCycle.class - [JAR]
├─ dagr.tasks.picard.CollectGcBiasMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectHsMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectIlluminaBasecallingMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectIlluminaLaneMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectInsertSizeMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectMultipleMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectQualityYieldMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectSequencingArtifactMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectTargetedPcrMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectVariantCallingMetrics.class - [JAR]
├─ dagr.tasks.picard.CollectWgsMetrics.class - [JAR]
├─ dagr.tasks.picard.CopyBaiToBamBai.class - [JAR]
├─ dagr.tasks.picard.DeleteBam.class - [JAR]
├─ dagr.tasks.picard.DownsampleSam.class - [JAR]
├─ dagr.tasks.picard.DownsamplingStrategy.class - [JAR]
├─ dagr.tasks.picard.EstimateLibraryComplexity.class - [JAR]
├─ dagr.tasks.picard.ExtractIlluminaBarcodes.class - [JAR]
├─ dagr.tasks.picard.ExtractSequences.class - [JAR]
├─ dagr.tasks.picard.FastqToSam.class - [JAR]
├─ dagr.tasks.picard.FastqToUnmappedSam.class - [JAR]
├─ dagr.tasks.picard.FifoBuffer.class - [JAR]
├─ dagr.tasks.picard.FilterVcf.class - [JAR]
├─ dagr.tasks.picard.FixMateInformation.class - [JAR]
├─ dagr.tasks.picard.GatherBamFiles.class - [JAR]
├─ dagr.tasks.picard.GatherVcfs.class - [JAR]
├─ dagr.tasks.picard.GenotypeConcordance.class - [JAR]
├─ dagr.tasks.picard.IlluminaBasecallsToSam.class - [JAR]
├─ dagr.tasks.picard.IntervalListToBed.class - [JAR]
├─ dagr.tasks.picard.IntervalListTools.class - [JAR]
├─ dagr.tasks.picard.MarkDuplicates.class - [JAR]
├─ dagr.tasks.picard.MarkIlluminaAdapters.class - [JAR]
├─ dagr.tasks.picard.MergeBamAlignment.class - [JAR]
├─ dagr.tasks.picard.MergeSamFiles.class - [JAR]
├─ dagr.tasks.picard.MergeVcfs.class - [JAR]
├─ dagr.tasks.picard.PicardMetricsTask.class - [JAR]
├─ dagr.tasks.picard.PicardOutput.class - [JAR]
├─ dagr.tasks.picard.PicardTask.class - [JAR]
├─ dagr.tasks.picard.RevertSam.class - [JAR]
├─ dagr.tasks.picard.SamToFastq.class - [JAR]
├─ dagr.tasks.picard.SetNmAndUqTags.class - [JAR]
├─ dagr.tasks.picard.SortSam.class - [JAR]
├─ dagr.tasks.picard.SortVcf.class - [JAR]
├─ dagr.tasks.picard.UpdateVcfSequenceDictionary.class - [JAR]
├─ dagr.tasks.picard.ValidateSamFile.class - [JAR]
├─ dagr.tasks.picard.VcfFormatConverter.class - [JAR]
