View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window fgbio_2.11-0.8.1.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
com.fulcrumgenomics.math
├─ com.fulcrumgenomics.math.BinomialDistribution.class - [JAR]
├─ com.fulcrumgenomics.math.FishersExactTest.class - [JAR]
com.fulcrumgenomics.basecalling
├─ com.fulcrumgenomics.basecalling.BasecallingParams.class - [JAR]
├─ com.fulcrumgenomics.basecalling.ExtractBasecallingParamsForPicard.class - [JAR]
├─ com.fulcrumgenomics.basecalling.ExtractIlluminaRunInfo.class - [JAR]
com.fulcrumgenomics.fasta
├─ com.fulcrumgenomics.fasta.HardMaskFasta.class - [JAR]
├─ com.fulcrumgenomics.fasta.ReferenceSequenceIterator.class - [JAR]
com.fulcrumgenomics
├─ com.fulcrumgenomics.FgBioDef.class - [JAR]
├─ com.fulcrumgenomics.Writer.class - [JAR]
com.fulcrumgenomics.testing
├─ com.fulcrumgenomics.testing.ReferenceSetBuilder.class - [JAR]
├─ com.fulcrumgenomics.testing.SamBuilder.class - [JAR]
├─ com.fulcrumgenomics.testing.VariantContextSetBuilder.class - [JAR]
com.fulcrumgenomics.umi
├─ com.fulcrumgenomics.umi.AnnotateBamWithUmis.class - [JAR]
├─ com.fulcrumgenomics.umi.CallDuplexConsensusReads.class - [JAR]
├─ com.fulcrumgenomics.umi.CallMolecularConsensusReads.class - [JAR]
├─ com.fulcrumgenomics.umi.CollectDuplexSeqMetrics.class - [JAR]
├─ com.fulcrumgenomics.umi.ConsensusCaller.class - [JAR]
├─ com.fulcrumgenomics.umi.ConsensusCallingIterator.class - [JAR]
├─ com.fulcrumgenomics.umi.ConsensusReadFilter.class - [JAR]
├─ com.fulcrumgenomics.umi.ConsensusTags.class - [JAR]
├─ com.fulcrumgenomics.umi.CorrectUmis.class - [JAR]
├─ com.fulcrumgenomics.umi.DuplexConsensusCaller.class - [JAR]
├─ com.fulcrumgenomics.umi.DuplexConsensusPerBaseValues.class - [JAR]
├─ com.fulcrumgenomics.umi.ExtractUmisFromBam.class - [JAR]
├─ com.fulcrumgenomics.umi.FilterConsensusReads.class - [JAR]
├─ com.fulcrumgenomics.umi.GroupReadsByUmi.class - [JAR]
├─ com.fulcrumgenomics.umi.ReviewConsensusVariants.class - [JAR]
├─ com.fulcrumgenomics.umi.SimpleConsensusCaller.class - [JAR]
├─ com.fulcrumgenomics.umi.Strategy.class - [JAR]
├─ com.fulcrumgenomics.umi.TagFamilySizeMetric.class - [JAR]
├─ com.fulcrumgenomics.umi.UmiConsensusCaller.class - [JAR]
├─ com.fulcrumgenomics.umi.VanillaConsensusRead.class - [JAR]
├─ com.fulcrumgenomics.umi.VanillaUmiConsensusCaller.class - [JAR]
├─ com.fulcrumgenomics.umi.VanillaUmiConsensusCallerOptions.class - [JAR]
com.fulcrumgenomics.alignment
├─ com.fulcrumgenomics.alignment.Aligner.class - [JAR]
├─ com.fulcrumgenomics.alignment.Alignment.class - [JAR]
├─ com.fulcrumgenomics.alignment.Cigar.class - [JAR]
├─ com.fulcrumgenomics.alignment.CigarElem.class - [JAR]
├─ com.fulcrumgenomics.alignment.LinearMatrix.class - [JAR]
├─ com.fulcrumgenomics.alignment.Matrix.class - [JAR]
├─ com.fulcrumgenomics.alignment.Mode.class - [JAR]
├─ com.fulcrumgenomics.alignment.SimpleIntMatrix.class - [JAR]
├─ com.fulcrumgenomics.alignment.package.class - [JAR]
com.fulcrumgenomics.cmdline
├─ com.fulcrumgenomics.cmdline.ClpGroups.class - [JAR]
├─ com.fulcrumgenomics.cmdline.FgBioCommonArgs.class - [JAR]
├─ com.fulcrumgenomics.cmdline.FgBioMain.class - [JAR]
├─ com.fulcrumgenomics.cmdline.FgBioTool.class - [JAR]
com.fulcrumgenomics.util
├─ com.fulcrumgenomics.util.DnaFoldPrediction.class - [JAR]
├─ com.fulcrumgenomics.util.DnaFoldPredictor.class - [JAR]
├─ com.fulcrumgenomics.util.GeneAnnotations.class - [JAR]
├─ com.fulcrumgenomics.util.GenomicSpan.class - [JAR]
├─ com.fulcrumgenomics.util.IlluminaAdapters.class - [JAR]
├─ com.fulcrumgenomics.util.IndexMetric.class - [JAR]
├─ com.fulcrumgenomics.util.Io.class - [JAR]
├─ com.fulcrumgenomics.util.MathUtil.class - [JAR]
├─ com.fulcrumgenomics.util.Metric.class - [JAR]
├─ com.fulcrumgenomics.util.NumericTypes.class - [JAR]
├─ com.fulcrumgenomics.util.PickIlluminaIndices.class - [JAR]
├─ com.fulcrumgenomics.util.PickIlluminaIndicesCommand.class - [JAR]
├─ com.fulcrumgenomics.util.PickLongIndices.class - [JAR]
├─ com.fulcrumgenomics.util.ProgressLogger.class - [JAR]
├─ com.fulcrumgenomics.util.ReadSegment.class - [JAR]
├─ com.fulcrumgenomics.util.ReadStructure.class - [JAR]
├─ com.fulcrumgenomics.util.RefFlatSource.class - [JAR]
├─ com.fulcrumgenomics.util.Rscript.class - [JAR]
├─ com.fulcrumgenomics.util.SampleBarcodeMetric.class - [JAR]
├─ com.fulcrumgenomics.util.SegmentType.class - [JAR]
├─ com.fulcrumgenomics.util.Sequences.class - [JAR]
├─ com.fulcrumgenomics.util.Sorter.class - [JAR]
com.fulcrumgenomics.bam
├─ com.fulcrumgenomics.bam.AutoGenerateReadGroupsByName.class - [JAR]
├─ com.fulcrumgenomics.bam.Bams.class - [JAR]
├─ com.fulcrumgenomics.bam.BaseCounts.class - [JAR]
├─ com.fulcrumgenomics.bam.BaseEntry.class - [JAR]
├─ com.fulcrumgenomics.bam.ClipBam.class - [JAR]
├─ com.fulcrumgenomics.bam.ClippingMetrics.class - [JAR]
├─ com.fulcrumgenomics.bam.ClippingMode.class - [JAR]
├─ com.fulcrumgenomics.bam.DeletionEntry.class - [JAR]
├─ com.fulcrumgenomics.bam.ErrorRateByReadPosition.class - [JAR]
├─ com.fulcrumgenomics.bam.ErrorRateByReadPositionMetric.class - [JAR]
├─ com.fulcrumgenomics.bam.EstimatePoolingFractions.class - [JAR]
├─ com.fulcrumgenomics.bam.FilterBam.class - [JAR]
├─ com.fulcrumgenomics.bam.FindSwitchbackReads.class - [JAR]
├─ com.fulcrumgenomics.bam.FindTechnicalReads.class - [JAR]
├─ com.fulcrumgenomics.bam.InsertionEntry.class - [JAR]
├─ com.fulcrumgenomics.bam.Matcher.class - [JAR]
├─ com.fulcrumgenomics.bam.ObsCounter.class - [JAR]
├─ com.fulcrumgenomics.bam.Pileup.class - [JAR]
├─ com.fulcrumgenomics.bam.PileupBuilder.class - [JAR]
├─ com.fulcrumgenomics.bam.PileupEntry.class - [JAR]
├─ com.fulcrumgenomics.bam.PoolingFractionMetric.class - [JAR]
├─ com.fulcrumgenomics.bam.RandomizeBam.class - [JAR]
├─ com.fulcrumgenomics.bam.ReadType.class - [JAR]
├─ com.fulcrumgenomics.bam.RemoveSamTags.class - [JAR]
├─ com.fulcrumgenomics.bam.RunInfoFromRead.class - [JAR]
├─ com.fulcrumgenomics.bam.SamRecordClipper.class - [JAR]
├─ com.fulcrumgenomics.bam.SetMateInformation.class - [JAR]
├─ com.fulcrumgenomics.bam.SortBam.class - [JAR]
├─ com.fulcrumgenomics.bam.SplitBam.class - [JAR]
├─ com.fulcrumgenomics.bam.SplitType.class - [JAR]
├─ com.fulcrumgenomics.bam.Template.class - [JAR]
├─ com.fulcrumgenomics.bam.TrimPrimers.class - [JAR]
├─ com.fulcrumgenomics.bam.UpdateReadGroups.class - [JAR]
com.fulcrumgenomics.fastq
├─ com.fulcrumgenomics.fastq.DemuxFastqs.class - [JAR]
├─ com.fulcrumgenomics.fastq.DemuxWriter.class - [JAR]
├─ com.fulcrumgenomics.fastq.FastqDemultiplexer.class - [JAR]
├─ com.fulcrumgenomics.fastq.FastqRecord.class - [JAR]
├─ com.fulcrumgenomics.fastq.FastqRecordWriter.class - [JAR]
├─ com.fulcrumgenomics.fastq.FastqSource.class - [JAR]
├─ com.fulcrumgenomics.fastq.FastqToBam.class - [JAR]
├─ com.fulcrumgenomics.fastq.FastqWriter.class - [JAR]
├─ com.fulcrumgenomics.fastq.OutputType.class - [JAR]
├─ com.fulcrumgenomics.fastq.QualityEncoding.class - [JAR]
├─ com.fulcrumgenomics.fastq.QualityEncodingDetector.class - [JAR]
├─ com.fulcrumgenomics.fastq.SamRecordWriter.class - [JAR]
├─ com.fulcrumgenomics.fastq.SampleInfo.class - [JAR]
├─ com.fulcrumgenomics.fastq.SortFastq.class - [JAR]
├─ com.fulcrumgenomics.fastq.TrimFastq.class - [JAR]
com.fulcrumgenomics.personal.nhomer
├─ com.fulcrumgenomics.personal.nhomer.GenerateRegionsFromFasta.class - [JAR]
├─ com.fulcrumgenomics.personal.nhomer.SplitTag.class - [JAR]
com.fulcrumgenomics.illumina
├─ com.fulcrumgenomics.illumina.RunInfo.class - [JAR]
├─ com.fulcrumgenomics.illumina.Sample.class - [JAR]
├─ com.fulcrumgenomics.illumina.SampleSheet.class - [JAR]
com.fulcrumgenomics.vcf
├─ com.fulcrumgenomics.vcf.AssemblyStatistics.class - [JAR]
├─ com.fulcrumgenomics.vcf.AssessPhasing.class - [JAR]
├─ com.fulcrumgenomics.vcf.AssessPhasingMetric.class - [JAR]
├─ com.fulcrumgenomics.vcf.BlockInfo.class - [JAR]
├─ com.fulcrumgenomics.vcf.ByIntervalListVariantContextIterator.class - [JAR]
├─ com.fulcrumgenomics.vcf.GenotypeInfo.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCut1BlockInfo.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCut1GenotypeInfo.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCut1VcfHeaderLines.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCut2BlockInfo.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCut2GenotypeInfo.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCut2VcfHeaderLines.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCutAndVcfMergingIterator.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCutCall.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCutOffsetAndCall.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCutReader.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCutToVcf.class - [JAR]
├─ com.fulcrumgenomics.vcf.HapCutType.class - [JAR]
├─ com.fulcrumgenomics.vcf.HeaderLines.class - [JAR]
├─ com.fulcrumgenomics.vcf.IndexQueryVariantContextIterator.class - [JAR]
├─ com.fulcrumgenomics.vcf.JointVariantContextIterator.class - [JAR]
├─ com.fulcrumgenomics.vcf.MakeMixtureVcf.class - [JAR]
├─ com.fulcrumgenomics.vcf.MakeTwoSampleMixtureVcf.class - [JAR]
├─ com.fulcrumgenomics.vcf.OverlapDetectionVariantContextIterator.class - [JAR]
├─ com.fulcrumgenomics.vcf.PhaseBlock.class - [JAR]
├─ com.fulcrumgenomics.vcf.PhaseBlockLengthMetric.class - [JAR]
├─ com.fulcrumgenomics.vcf.PhaseCigar.class - [JAR]
├─ com.fulcrumgenomics.vcf.PhaseCigarOp.class - [JAR]
├─ com.fulcrumgenomics.vcf.VariantMask.class - [JAR]
com.fulcrumgenomics.personal.tfenne
├─ com.fulcrumgenomics.personal.tfenne.StripFastqReadNumbers.class - [JAR]
com.fulcrumgenomics.internal
├─ com.fulcrumgenomics.internal.BuildToolDocs.class - [JAR]
├─ com.fulcrumgenomics.internal.ColumnDescription.class - [JAR]
├─ com.fulcrumgenomics.internal.FgMetricsDoclet.class - [JAR]
├─ com.fulcrumgenomics.internal.InternalTool.class - [JAR]
├─ com.fulcrumgenomics.internal.InternalTools.class - [JAR]
├─ com.fulcrumgenomics.internal.MetricDescription.class - [JAR]
com.fulcrumgenomics.vcf.filtration
├─ com.fulcrumgenomics.vcf.filtration.EndRepairArtifactLikelihoodFilter.class - [JAR]
├─ com.fulcrumgenomics.vcf.filtration.FilterSomaticVcf.class - [JAR]
├─ com.fulcrumgenomics.vcf.filtration.SomaticVariantFilter.class - [JAR]
com.fulcrumgenomics.rnaseq
├─ com.fulcrumgenomics.rnaseq.CollectErccMetrics.class - [JAR]
├─ com.fulcrumgenomics.rnaseq.ErccDetailedMetric.class - [JAR]
├─ com.fulcrumgenomics.rnaseq.ErccMixture.class - [JAR]
├─ com.fulcrumgenomics.rnaseq.ErccSummaryMetrics.class - [JAR]
├─ com.fulcrumgenomics.rnaseq.EstimateRnaSeqInsertSize.class - [JAR]
├─ com.fulcrumgenomics.rnaseq.InsertSizeMetric.class - [JAR]
com.fulcrumgenomics.bam.api
├─ com.fulcrumgenomics.bam.api.HeaderHelper.class - [JAR]
├─ com.fulcrumgenomics.bam.api.QueryType.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamIterator.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamOrder.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamRecord.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamRecordCodec.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamRecordIntermediate.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamSource.class - [JAR]
├─ com.fulcrumgenomics.bam.api.SamWriter.class - [JAR]
├─ com.fulcrumgenomics.bam.api.TransientAttrs.class - [JAR]
