Download picard.jar - @com.github.broadinstitute

Table Of Contents

Latest Version
All Versions
View Java Class Source Code in JAR file

Latest Version

Download com.github.broadinstitute : picard JAR file - Latest Versions:

Latest Stable: 3.1.0.jar

All Versions

Download com.github.broadinstitute : picard JAR file - All Versions:

Version	Vulnerabilities	Size	Updated
3.1.x	picard-3.1.0.jar		1.77 MB	Jul 28, 2023
3.0.x	picard-3.0.0.jar		1.76 MB	Feb 21, 2023
2.27.x	picard-2.27.5.jar		1.74 MB	Oct 06, 2022
picard-2.27.4.jar		1.74 MB	Jun 29, 2022
picard-2.27.3.jar		1.73 MB	Jun 09, 2022
picard-2.27.2.jar		1.73 MB	May 25, 2022
picard-2.27.1.jar		1.73 MB	Apr 07, 2022
picard-2.27.0.jar		1.72 MB	Apr 06, 2022
2.26.x	picard-2.26.11.jar		1.71 MB	Feb 23, 2022
picard-2.26.10.jar		1.70 MB	Jan 03, 2022
picard-2.26.9.jar		1.70 MB	Dec 20, 2021
picard-2.26.8.jar		1.70 MB	Dec 15, 2021
picard-2.26.7.jar		1.70 MB	Dec 14, 2021
picard-2.26.6.jar		1.70 MB	Nov 24, 2021
picard-2.26.5.jar		1.70 MB	Nov 10, 2021
picard-2.26.4.jar		1.70 MB	Oct 26, 2021
picard-2.26.3.jar		1.70 MB	Oct 12, 2021
picard-2.26.2.jar		1.70 MB	Sep 09, 2021
picard-2.26.1.jar		1.70 MB	Sep 02, 2021
picard-2.26.0.jar		1.69 MB	Aug 18, 2021
2.25.x	picard-2.25.7.jar		1.68 MB	Jul 21, 2021
picard-2.25.6.jar		1.68 MB	Jun 14, 2021
picard-2.25.5.jar		1.68 MB	May 18, 2021
picard-2.25.4.jar		1.65 MB	May 03, 2021
picard-2.25.3.jar		1.65 MB	Apr 29, 2021
picard-2.25.2.jar		1.65 MB	Apr 09, 2021
picard-2.25.1.jar		1.64 MB	Mar 24, 2021
picard-2.25.0.jar		1.64 MB	Feb 10, 2021
2.24.x	picard-2.24.2.jar		1.65 MB	Feb 03, 2021
picard-2.24.1.jar		1.65 MB	Jan 21, 2021
picard-2.24.0.jar		1.65 MB	Jan 04, 2021
2.23.x	picard-2.23.9.jar		1.65 MB	Dec 08, 2020
picard-2.23.8.jar		1.65 MB	Oct 14, 2020
picard-2.23.7.jar		1.65 MB	Oct 13, 2020
picard-2.23.6.jar		1.65 MB	Sep 30, 2020
picard-2.23.5.jar		1.65 MB	Sep 29, 2020
picard-2.23.4.jar		1.65 MB	Sep 03, 2020
picard-2.23.3.jar		1.64 MB	Jul 20, 2020
picard-2.23.2.jar		1.63 MB	Jul 09, 2020
picard-2.23.1.jar		1.63 MB	Jun 23, 2020
picard-2.23.0.jar		1.63 MB	Jun 09, 2020
2.22.x	picard-2.22.9.jar		1.62 MB	Jun 02, 2020
picard-2.22.8.jar		1.62 MB	May 21, 2020
picard-2.22.7.jar		1.62 MB	May 18, 2020
picard-2.22.6.jar		1.62 MB	May 13, 2020
picard-2.22.5.jar		1.62 MB	May 11, 2020
picard-2.22.4.jar		1.62 MB	Apr 28, 2020
picard-2.22.3.jar		1.62 MB	Apr 08, 2020
picard-2.22.2.jar		1.61 MB	Mar 30, 2020
picard-2.22.1.jar		1.61 MB	Mar 16, 2020
picard-2.22.0.jar		1.60 MB	Feb 27, 2020
2.21.x	picard-2.21.9.jar		1.60 MB	Feb 18, 2020
picard-2.21.8.jar		1.60 MB	Feb 04, 2020
picard-2.21.7.jar		1.60 MB	Jan 21, 2020
picard-2.21.6.jar		1.60 MB	Dec 19, 2019
picard-2.21.5.jar		1.60 MB	Dec 18, 2019
picard-2.21.4.jar		1.60 MB	Nov 26, 2019
picard-2.21.3.jar		1.59 MB	Nov 12, 2019
picard-2.21.2.jar		1.59 MB	Oct 28, 2019
picard-2.21.1.jar		1.59 MB	Oct 01, 2019
2.20.x	picard-2.20.8.jar		1.58 MB	Sep 16, 2019
picard-2.20.7.jar		1.58 MB	Sep 03, 2019
picard-2.20.6.jar		1.56 MB	Aug 19, 2019
picard-2.20.5.jar		1.54 MB	Aug 05, 2019
picard-2.20.4.jar		1.54 MB	Jul 22, 2019
picard-2.20.3.jar		1.53 MB	Jul 01, 2019
picard-2.20.2.jar		1.48 MB	May 28, 2019
picard-2.20.1.jar		1.48 MB	May 13, 2019
picard-2.20.0.jar			Apr 29, 2019
2.19.x	picard-2.19.2.jar		1.47 MB	Apr 23, 2019
picard-2.19.1.jar		1.47 MB	Apr 18, 2019
picard-2.19.0.jar		1.46 MB	Mar 25, 2019
2.18.x	picard-2.18.29.jar		1.46 MB	Mar 19, 2019
picard-2.18.28.jar		1.46 MB	Mar 05, 2019
picard-2.18.27.jar		1.46 MB	Feb 22, 2019
picard-2.18.26.jar		1.46 MB	Feb 04, 2019
picard-2.18.25.jar		1.46 MB	Jan 23, 2019
picard-2.18.24.jar		1.46 MB	Jan 22, 2019
picard-2.18.23.jar		1.45 MB	Jan 07, 2019
picard-2.18.22.jar		1.45 MB	Jan 01, 2019
picard-2.18.21.jar		1.45 MB	Dec 17, 2018
picard-2.18.20.jar		1.45 MB	Dec 05, 2018
picard-2.18.19.jar		1.45 MB	Dec 03, 2018
picard-2.18.18.jar		1.45 MB	Dec 03, 2018
picard-2.18.17.jar		1.45 MB	Nov 20, 2018
picard-2.18.16.jar		1.45 MB	Nov 05, 2018
picard-2.18.15.jar		1.44 MB	Sep 25, 2018
picard-2.18.14.jar		1.44 MB	Sep 12, 2018
picard-2.18.13.jar		1.44 MB	Sep 10, 2018
picard-2.18.12.jar		1.44 MB	Aug 28, 2018
picard-2.18.11.jar		1.43 MB	Jul 23, 2018
picard-2.18.10.jar		1.43 MB	Jul 19, 2018
picard-2.18.9.jar		1.38 MB	Jul 02, 2018
picard-2.18.8.jar		1.38 MB	Jul 02, 2018
picard-2.18.7.jar		1.38 MB	Jun 07, 2018
picard-2.18.6.jar		1.38 MB	Jun 04, 2018
picard-2.18.5.jar		1.38 MB	May 24, 2018
picard-2.18.4.jar		1.37 MB	Apr 30, 2018
picard-2.18.3.jar		1.37 MB	Apr 24, 2018
picard-2.18.2.jar		1.37 MB	Apr 04, 2018
picard-2.18.1.jar		1.37 MB	Mar 26, 2018
picard-2.18.0.jar		1.37 MB	Mar 19, 2018
2.17.x	picard-2.17.11.jar		1.34 MB	Feb 27, 2018
picard-2.17.10.jar		1.34 MB	Feb 13, 2018
picard-2.17.9.jar		1.34 MB	Feb 12, 2018
picard-2.17.8.jar		1.34 MB	Feb 05, 2018
picard-2.17.7.jar		1.34 MB	Feb 05, 2018
picard-2.17.6.jar		1.34 MB	Jan 29, 2018
picard-2.17.5.jar		1.34 MB	Jan 26, 2018
picard-2.17.4.jar		1.34 MB	Jan 18, 2018
picard-2.17.3.jar		1.34 MB	Jan 09, 2018
picard-2.17.2.jar		1.34 MB	Jan 07, 2018
picard-2.17.1.jar		1.32 MB	Jan 02, 2018
picard-2.17.0.jar		1.32 MB	Dec 19, 2017
2.16.x	picard-2.16.0.jar		1.32 MB	Dec 05, 2017
2.15.x	picard-2.15.0.jar		1.31 MB	Nov 13, 2017
2.14.x	picard-2.14.1.jar		1.31 MB	Nov 06, 2017
picard-2.14.0.jar		1.31 MB	Oct 23, 2017
2.14	picard-2.14.jar		1.31 MB	Oct 23, 2017
2.13.x	picard-2.13.2.jar		1.30 MB	Oct 03, 2017
picard-2.13.1.jar		1.30 MB	Oct 02, 2017
2.13	picard-2.13.jar		1.30 MB	Oct 02, 2017
2.12.x	picard-2.12.2.jar		1.30 MB	Sep 27, 2017
picard-2.12.1.jar		1.30 MB	Sep 11, 2017
picard-2.12.0.jar		1.30 MB	Sep 07, 2017
2.11.x	picard-2.11.0.jar		1.30 MB	Aug 28, 2017
2.10.x	picard-2.10.10.jar		1.30 MB	Aug 16, 2017
picard-2.10.9.jar		1.30 MB	Aug 08, 2017
picard-2.10.8.jar		1.30 MB	Aug 08, 2017
picard-2.10.7.jar		1.30 MB	Aug 03, 2017
picard-2.10.6.jar		1.30 MB	Jul 31, 2017
picard-2.10.5.jar		1.30 MB	Jul 26, 2017
picard-2.10.4.jar		1.30 MB	Jul 25, 2017
picard-2.10.3.jar		1.30 MB	Jul 18, 2017
picard-2.10.2.jar		1.30 MB	Jul 13, 2017
picard-2.10.1.jar		1.30 MB	Jul 11, 2017
picard-2.10.0.jar		1.29 MB	Jul 05, 2017
2.9.x	picard-2.9.5.jar		1.29 MB	Jul 05, 2017
picard-2.9.4.jar		1.27 MB	Jun 15, 2017
picard-2.9.3.jar		1.27 MB	Jun 14, 2017
picard-2.9.2.jar		1.23 MB	May 08, 2017
picard-2.9.1.jar		1.24 MB	May 03, 2017
picard-2.9.0.jar		1.22 MB	Feb 21, 2017
2.8.x	picard-2.8.3.jar		1.22 MB	Feb 06, 2017
picard-2.8.2.jar		1.22 MB	Jan 23, 2017
picard-2.8.1.jar		1.22 MB	Dec 22, 2016
picard-2.8.0.jar		1.21 MB	Dec 08, 2016
2.7.x	picard-2.7.2.jar		1.21 MB	Dec 07, 2016
picard-2.7.1.jar		1.18 MB	Oct 25, 2016
picard-2.7.0.jar		1.17 MB	Oct 17, 2016
2.6.x	picard-2.6.0.jar		1.15 MB	Aug 08, 2016
2.5.x	picard-2.5.0.jar		1.02 MB	Jun 23, 2016
2.4.x	picard-2.4.1.jar		1.02 MB	May 28, 2016
2.3.x	picard-2.3.0.jar		1.02 MB	May 12, 2016
2.2.x	picard-2.2.4.jar		1.01 MB	Apr 27, 2016
picard-2.2.3.jar		1.01 MB	Apr 27, 2016
picard-2.2.2.jar		1016.21 KB	Apr 20, 2016
picard-2.2.1.jar		1010.40 KB	Apr 05, 2016
picard-2.2.0.jar		1009.21 KB	Apr 05, 2016
2.1.x	picard-2.1.1.jar		997.98 KB	Mar 04, 2016
picard-2.1.0.jar		993.39 KB	Feb 06, 2016
2.0.x	picard-2.0.1.jar		894.95 KB	Dec 04, 2015
picard-2.0.0.jar		894.95 KB	Dec 03, 2015
1.143	picard-1.143.jar		890.97 KB	Dec 03, 2015
1.142	picard-1.142.jar		894.95 KB	Dec 03, 2015
1.141	picard-1.141.jar		890.97 KB	Nov 16, 2015
1.140	picard-1.140.jar		885.71 KB	Oct 07, 2015
1.139	picard-1.139.jar		879.16 KB	Sep 14, 2015
1.138	picard-1.138.jar		869.19 KB	Aug 11, 2015
1.137	picard-1.137.jar		863.07 KB	Jul 27, 2015
1.136	picard-1.136.jar		860.24 KB	Jul 13, 2015
1.135	picard-1.135.jar		858.47 KB	Jun 29, 2015
1.134	picard-1.134.jar		856.66 KB	Jun 11, 2015
1.133	picard-1.133.jar		849.18 KB	Jun 01, 2015
1.131	picard-1.131.jar		848.59 KB	May 07, 2015
1.130	picard-1.130.jar		793.85 KB	Mar 24, 2015
1.129	picard-1.129.jar		772.05 KB	Mar 23, 2015

Version

Vulnerabilities

Size

Updated

3.1.x

picard-3.1.0.jar

1.77 MB

Jul 28, 2023

3.0.x

picard-3.0.0.jar

1.76 MB

Feb 21, 2023

2.27.x

picard-2.27.5.jar

1.74 MB

Oct 06, 2022

picard-2.27.4.jar

1.74 MB

Jun 29, 2022

picard-2.27.3.jar

1.73 MB

Jun 09, 2022

picard-2.27.2.jar

1.73 MB

May 25, 2022

picard-2.27.1.jar

1.73 MB

Apr 07, 2022

picard-2.27.0.jar

1.72 MB

Apr 06, 2022

2.26.x

picard-2.26.11.jar

1.71 MB

Feb 23, 2022

picard-2.26.10.jar

1.70 MB

Jan 03, 2022

picard-2.26.9.jar

1.70 MB

Dec 20, 2021

picard-2.26.8.jar

1.70 MB

Dec 15, 2021

picard-2.26.7.jar

1.70 MB

Dec 14, 2021

picard-2.26.6.jar

1.70 MB

Nov 24, 2021

picard-2.26.5.jar

1.70 MB

Nov 10, 2021

picard-2.26.4.jar

1.70 MB

Oct 26, 2021

picard-2.26.3.jar

1.70 MB

Oct 12, 2021

picard-2.26.2.jar

1.70 MB

Sep 09, 2021

picard-2.26.1.jar

1.70 MB

Sep 02, 2021

picard-2.26.0.jar

1.69 MB

Aug 18, 2021

2.25.x

picard-2.25.7.jar

1.68 MB

Jul 21, 2021

picard-2.25.6.jar

1.68 MB

Jun 14, 2021

picard-2.25.5.jar

1.68 MB

May 18, 2021

picard-2.25.4.jar

1.65 MB

May 03, 2021

picard-2.25.3.jar

1.65 MB

Apr 29, 2021

picard-2.25.2.jar

1.65 MB

Apr 09, 2021

picard-2.25.1.jar

1.64 MB

Mar 24, 2021

picard-2.25.0.jar

1.64 MB

Feb 10, 2021

2.24.x

picard-2.24.2.jar

1.65 MB

Feb 03, 2021

picard-2.24.1.jar

1.65 MB

Jan 21, 2021

picard-2.24.0.jar

1.65 MB

Jan 04, 2021

2.23.x

picard-2.23.9.jar

1.65 MB

Dec 08, 2020

picard-2.23.8.jar

1.65 MB

Oct 14, 2020

picard-2.23.7.jar

1.65 MB

Oct 13, 2020

picard-2.23.6.jar

1.65 MB

Sep 30, 2020

picard-2.23.5.jar

1.65 MB

Sep 29, 2020

picard-2.23.4.jar

1.65 MB

Sep 03, 2020

picard-2.23.3.jar

1.64 MB

Jul 20, 2020

picard-2.23.2.jar

1.63 MB

Jul 09, 2020

picard-2.23.1.jar

1.63 MB

Jun 23, 2020

picard-2.23.0.jar

1.63 MB

Jun 09, 2020

2.22.x

picard-2.22.9.jar

1.62 MB

Jun 02, 2020

picard-2.22.8.jar

1.62 MB

May 21, 2020

picard-2.22.7.jar

1.62 MB

May 18, 2020

picard-2.22.6.jar

1.62 MB

May 13, 2020

picard-2.22.5.jar

1.62 MB

May 11, 2020

picard-2.22.4.jar

1.62 MB

Apr 28, 2020

picard-2.22.3.jar

1.62 MB

Apr 08, 2020

picard-2.22.2.jar

1.61 MB

Mar 30, 2020

picard-2.22.1.jar

1.61 MB

Mar 16, 2020

picard-2.22.0.jar

1.60 MB

Feb 27, 2020

2.21.x

picard-2.21.9.jar

1.60 MB

Feb 18, 2020

picard-2.21.8.jar

1.60 MB

Feb 04, 2020

picard-2.21.7.jar

1.60 MB

Jan 21, 2020

picard-2.21.6.jar

1.60 MB

Dec 19, 2019

picard-2.21.5.jar

1.60 MB

Dec 18, 2019

picard-2.21.4.jar

1.60 MB

Nov 26, 2019

picard-2.21.3.jar

1.59 MB

Nov 12, 2019

picard-2.21.2.jar

1.59 MB

Oct 28, 2019

picard-2.21.1.jar

1.59 MB

Oct 01, 2019

2.20.x

picard-2.20.8.jar

1.58 MB

Sep 16, 2019

picard-2.20.7.jar

1.58 MB

Sep 03, 2019

picard-2.20.6.jar

1.56 MB

Aug 19, 2019

picard-2.20.5.jar

1.54 MB

Aug 05, 2019

picard-2.20.4.jar

1.54 MB

Jul 22, 2019

picard-2.20.3.jar

1.53 MB

Jul 01, 2019

picard-2.20.2.jar

1.48 MB

May 28, 2019

picard-2.20.1.jar

1.48 MB

May 13, 2019

picard-2.20.0.jar

Apr 29, 2019

2.19.x

picard-2.19.2.jar

1.47 MB

Apr 23, 2019

picard-2.19.1.jar

1.47 MB

Apr 18, 2019

picard-2.19.0.jar

1.46 MB

Mar 25, 2019

2.18.x

picard-2.18.29.jar

1.46 MB

Mar 19, 2019

picard-2.18.28.jar

1.46 MB

Mar 05, 2019

picard-2.18.27.jar

1.46 MB

Feb 22, 2019

picard-2.18.26.jar

1.46 MB

Feb 04, 2019

picard-2.18.25.jar

1.46 MB

Jan 23, 2019

picard-2.18.24.jar

1.46 MB

Jan 22, 2019

picard-2.18.23.jar

1.45 MB

Jan 07, 2019

picard-2.18.22.jar

1.45 MB

Jan 01, 2019

picard-2.18.21.jar

1.45 MB

Dec 17, 2018

picard-2.18.20.jar

1.45 MB

Dec 05, 2018

picard-2.18.19.jar

1.45 MB

Dec 03, 2018

picard-2.18.18.jar

1.45 MB

Dec 03, 2018

picard-2.18.17.jar

1.45 MB

Nov 20, 2018

picard-2.18.16.jar

1.45 MB

Nov 05, 2018

picard-2.18.15.jar

1.44 MB

Sep 25, 2018

picard-2.18.14.jar

1.44 MB

Sep 12, 2018

picard-2.18.13.jar

1.44 MB

Sep 10, 2018

picard-2.18.12.jar

1.44 MB

Aug 28, 2018

picard-2.18.11.jar

1.43 MB

Jul 23, 2018

picard-2.18.10.jar

1.43 MB

Jul 19, 2018

picard-2.18.9.jar

1.38 MB

Jul 02, 2018

picard-2.18.8.jar

1.38 MB

Jul 02, 2018

picard-2.18.7.jar

1.38 MB

Jun 07, 2018

picard-2.18.6.jar

1.38 MB

Jun 04, 2018

picard-2.18.5.jar

1.38 MB

May 24, 2018

picard-2.18.4.jar

1.37 MB

Apr 30, 2018

picard-2.18.3.jar

1.37 MB

Apr 24, 2018

picard-2.18.2.jar

1.37 MB

Apr 04, 2018

picard-2.18.1.jar

1.37 MB

Mar 26, 2018

picard-2.18.0.jar

1.37 MB

Mar 19, 2018

2.17.x

picard-2.17.11.jar

1.34 MB

Feb 27, 2018

picard-2.17.10.jar

1.34 MB

Feb 13, 2018

picard-2.17.9.jar

1.34 MB

Feb 12, 2018

picard-2.17.8.jar

1.34 MB

Feb 05, 2018

picard-2.17.7.jar

1.34 MB

Feb 05, 2018

picard-2.17.6.jar

1.34 MB

Jan 29, 2018

picard-2.17.5.jar

1.34 MB

Jan 26, 2018

picard-2.17.4.jar

1.34 MB

Jan 18, 2018

picard-2.17.3.jar

1.34 MB

Jan 09, 2018

picard-2.17.2.jar

1.34 MB

Jan 07, 2018

picard-2.17.1.jar

1.32 MB

Jan 02, 2018

picard-2.17.0.jar

1.32 MB

Dec 19, 2017

2.16.x

picard-2.16.0.jar

1.32 MB

Dec 05, 2017

2.15.x

picard-2.15.0.jar

1.31 MB

Nov 13, 2017

2.14.x

picard-2.14.1.jar

1.31 MB

Nov 06, 2017

picard-2.14.0.jar

1.31 MB

Oct 23, 2017

2.14

picard-2.14.jar

1.31 MB

Oct 23, 2017

2.13.x

picard-2.13.2.jar

1.30 MB

Oct 03, 2017

picard-2.13.1.jar

1.30 MB

Oct 02, 2017

2.13

picard-2.13.jar

1.30 MB

Oct 02, 2017

2.12.x

picard-2.12.2.jar

1.30 MB

Sep 27, 2017

picard-2.12.1.jar

1.30 MB

Sep 11, 2017

picard-2.12.0.jar

1.30 MB

Sep 07, 2017

2.11.x

picard-2.11.0.jar

1.30 MB

Aug 28, 2017

2.10.x

picard-2.10.10.jar

1.30 MB

Aug 16, 2017

picard-2.10.9.jar

1.30 MB

Aug 08, 2017

picard-2.10.8.jar

1.30 MB

Aug 08, 2017

picard-2.10.7.jar

1.30 MB

Aug 03, 2017

picard-2.10.6.jar

1.30 MB

Jul 31, 2017

picard-2.10.5.jar

1.30 MB

Jul 26, 2017

picard-2.10.4.jar

1.30 MB

Jul 25, 2017

picard-2.10.3.jar

1.30 MB

Jul 18, 2017

picard-2.10.2.jar

1.30 MB

Jul 13, 2017

picard-2.10.1.jar

1.30 MB

Jul 11, 2017

picard-2.10.0.jar

1.29 MB

Jul 05, 2017

2.9.x

picard-2.9.5.jar

1.29 MB

Jul 05, 2017

picard-2.9.4.jar

1.27 MB

Jun 15, 2017

picard-2.9.3.jar

1.27 MB

Jun 14, 2017

picard-2.9.2.jar

1.23 MB

May 08, 2017

picard-2.9.1.jar

1.24 MB

May 03, 2017

picard-2.9.0.jar

1.22 MB

Feb 21, 2017

2.8.x

picard-2.8.3.jar

1.22 MB

Feb 06, 2017

picard-2.8.2.jar

1.22 MB

Jan 23, 2017

picard-2.8.1.jar

1.22 MB

Dec 22, 2016

picard-2.8.0.jar

1.21 MB

Dec 08, 2016

2.7.x

picard-2.7.2.jar

1.21 MB

Dec 07, 2016

picard-2.7.1.jar

1.18 MB

Oct 25, 2016

picard-2.7.0.jar

1.17 MB

Oct 17, 2016

2.6.x

picard-2.6.0.jar

1.15 MB

Aug 08, 2016

2.5.x

picard-2.5.0.jar

1.02 MB

Jun 23, 2016

2.4.x

picard-2.4.1.jar

1.02 MB

May 28, 2016

2.3.x

picard-2.3.0.jar

1.02 MB

May 12, 2016

2.2.x

picard-2.2.4.jar

1.01 MB

Apr 27, 2016

picard-2.2.3.jar

1.01 MB

Apr 27, 2016

picard-2.2.2.jar

1016.21 KB

Apr 20, 2016

picard-2.2.1.jar

1010.40 KB

Apr 05, 2016

picard-2.2.0.jar

1009.21 KB

Apr 05, 2016

2.1.x

picard-2.1.1.jar

997.98 KB

Mar 04, 2016

picard-2.1.0.jar

993.39 KB

Feb 06, 2016

2.0.x

picard-2.0.1.jar

894.95 KB

Dec 04, 2015

picard-2.0.0.jar

894.95 KB

Dec 03, 2015

1.143

picard-1.143.jar

890.97 KB

Dec 03, 2015

1.142

picard-1.142.jar

894.95 KB

Dec 03, 2015

1.141

picard-1.141.jar

890.97 KB

Nov 16, 2015

1.140

picard-1.140.jar

885.71 KB

Oct 07, 2015

1.139

picard-1.139.jar

879.16 KB

Sep 14, 2015

1.138

picard-1.138.jar

869.19 KB

Aug 11, 2015

1.137

picard-1.137.jar

863.07 KB

Jul 27, 2015

1.136

picard-1.136.jar

860.24 KB

Jul 13, 2015

1.135

picard-1.135.jar

858.47 KB

Jun 29, 2015

1.134

picard-1.134.jar

856.66 KB

Jun 11, 2015

1.133

picard-1.133.jar

849.18 KB

Jun 01, 2015

1.131

picard-1.131.jar

848.59 KB

May 07, 2015

1.130

picard-1.130.jar

793.85 KB

Mar 24, 2015

1.129

picard-1.129.jar

772.05 KB

Mar 23, 2015

View Java Class Source Code in JAR file

Download JD-GUI to open JAR file and explore Java source code file (.class .java)
Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window picard-3.1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.

picard.illumina.parser.fakers

├─ picard.illumina.parser.fakers.BarcodeFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.BciFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.BclFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.BclIndexFaker.class - [JAR]

├─ picard.illumina.parser.fakers.ClocsFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.FileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.FilterFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.LocsFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.MultiTileBclFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.MultiTileLocsFileFaker.class - [JAR]

├─ picard.illumina.parser.fakers.PosFileFaker.class - [JAR]

picard.arrays.illumina

├─ picard.arrays.illumina.ArraysControlInfo.class - [JAR]

├─ picard.arrays.illumina.BpmToNormalizationManifestCsv.class - [JAR]

├─ picard.arrays.illumina.Build37ExtendedIlluminaManifest.class - [JAR]

├─ picard.arrays.illumina.Build37ExtendedIlluminaManifestRecord.class - [JAR]

├─ picard.arrays.illumina.Build37ExtendedIlluminaManifestRecordCreator.class - [JAR]

├─ picard.arrays.illumina.CompareGtcFiles.class - [JAR]

├─ picard.arrays.illumina.CreateExtendedIlluminaManifest.class - [JAR]

├─ picard.arrays.illumina.IlluminaAdpcFileWriter.class - [JAR]

├─ picard.arrays.illumina.IlluminaBPMFile.class - [JAR]

├─ picard.arrays.illumina.IlluminaBPMLocusEntry.class - [JAR]

├─ picard.arrays.illumina.IlluminaGenotype.class - [JAR]

├─ picard.arrays.illumina.IlluminaManifest.class - [JAR]

├─ picard.arrays.illumina.IlluminaManifestRecord.class - [JAR]

├─ picard.arrays.illumina.InfiniumDataFile.class - [JAR]

├─ picard.arrays.illumina.InfiniumEGTFile.class - [JAR]

├─ picard.arrays.illumina.InfiniumFileTOC.class - [JAR]

├─ picard.arrays.illumina.InfiniumGTCFile.class - [JAR]

├─ picard.arrays.illumina.InfiniumGTCRecord.class - [JAR]

├─ picard.arrays.illumina.InfiniumNormalizationManifest.class - [JAR]

├─ picard.arrays.illumina.InfiniumTransformation.class - [JAR]

├─ picard.arrays.illumina.InfiniumVcfFields.class - [JAR]

picard.vcf.processor.util

├─ picard.vcf.processor.util.PredicateFilterDecoratingClosableIterator.class - [JAR]

picard.cmdline

├─ picard.cmdline.CommandLineDefaults.class - [JAR]

├─ picard.cmdline.CommandLineProgram.class - [JAR]

├─ picard.cmdline.CommandLineSyntaxTranslater.class - [JAR]

├─ picard.cmdline.PicardCommandLine.class - [JAR]

├─ picard.cmdline.StandardOptionDefinitions.class - [JAR]

picard.nio

├─ picard.nio.DeleteRecursivelyOnExitPathHook.class - [JAR]

├─ picard.nio.GATKBucketUtils.class - [JAR]

├─ picard.nio.GATKIOUtils.class - [JAR]

├─ picard.nio.GATKUtils.class - [JAR]

├─ picard.nio.GoogleStorageUtils.class - [JAR]

├─ picard.nio.PathProvider.class - [JAR]

├─ picard.nio.PicardHtsPath.class - [JAR]

picard.vcf.MendelianViolations

├─ picard.vcf.MendelianViolations.FindMendelianViolations.class - [JAR]

├─ picard.vcf.MendelianViolations.MendelianViolationDetector.class - [JAR]

├─ picard.vcf.MendelianViolations.MendelianViolationMetrics.class - [JAR]

├─ picard.vcf.MendelianViolations.MendelianViolationsByFamily.class - [JAR]

picard.vcf

├─ picard.vcf.AccumulateVariantCallingMetrics.class - [JAR]

├─ picard.vcf.ByIntervalListVariantContextIterator.class - [JAR]

├─ picard.vcf.CallingMetricAccumulator.class - [JAR]

├─ picard.vcf.CollectVariantCallingMetrics.class - [JAR]

├─ picard.vcf.FixVcfHeader.class - [JAR]

├─ picard.vcf.GA4GHScheme.class - [JAR]

├─ picard.vcf.GA4GHSchemeWithMissingAsHomRef.class - [JAR]

├─ picard.vcf.GatherVcfs.class - [JAR]

├─ picard.vcf.GenotypeConcordance.class - [JAR]

├─ picard.vcf.GenotypeConcordanceContingencyMetrics.class - [JAR]

├─ picard.vcf.GenotypeConcordanceCounts.class - [JAR]

├─ picard.vcf.GenotypeConcordanceDetailMetrics.class - [JAR]

├─ picard.vcf.GenotypeConcordanceScheme.class - [JAR]

├─ picard.vcf.GenotypeConcordanceSchemeFactory.class - [JAR]

├─ picard.vcf.GenotypeConcordanceStateCodes.class - [JAR]

├─ picard.vcf.GenotypeConcordanceStates.class - [JAR]

├─ picard.vcf.GenotypeConcordanceSummaryMetrics.class - [JAR]

├─ picard.vcf.GvcfMetricAccumulator.class - [JAR]

├─ picard.vcf.LiftoverVcf.class - [JAR]

├─ picard.vcf.MakeSitesOnlyVcf.class - [JAR]

├─ picard.vcf.MakeVcfSampleNameMap.class - [JAR]

├─ picard.vcf.MergeVcfs.class - [JAR]

├─ picard.vcf.OrderedSet.class - [JAR]

├─ picard.vcf.PairedVariantSubContextIterator.class - [JAR]

├─ picard.vcf.RenameSampleInVcf.class - [JAR]

├─ picard.vcf.SortVcf.class - [JAR]

├─ picard.vcf.SplitVcfs.class - [JAR]

├─ picard.vcf.UpdateVcfSequenceDictionary.class - [JAR]

├─ picard.vcf.VcfFormatConverter.class - [JAR]

├─ picard.vcf.VcfToIntervalList.class - [JAR]

├─ picard.vcf.VcfUtils.class - [JAR]

picard.analysis

├─ picard.analysis.AbstractWgsMetricsCollector.class - [JAR]

├─ picard.analysis.AdapterUtility.class - [JAR]

├─ picard.analysis.AlignmentSummaryMetrics.class - [JAR]

├─ picard.analysis.AlignmentSummaryMetricsCollector.class - [JAR]

├─ picard.analysis.BaseDistributionByCycleMetrics.class - [JAR]

├─ picard.analysis.ChimeraUtil.class - [JAR]

├─ picard.analysis.CollectAlignmentSummaryMetrics.class - [JAR]

├─ picard.analysis.CollectBaseDistributionByCycle.class - [JAR]

├─ picard.analysis.CollectGcBiasMetrics.class - [JAR]

├─ picard.analysis.CollectInsertSizeMetrics.class - [JAR]

├─ picard.analysis.CollectJumpingLibraryMetrics.class - [JAR]

├─ picard.analysis.CollectMultipleMetrics.class - [JAR]

├─ picard.analysis.CollectOxoGMetrics.class - [JAR]

├─ picard.analysis.CollectQualityYieldMetrics.class - [JAR]

├─ picard.analysis.CollectRawWgsMetrics.class - [JAR]

├─ picard.analysis.CollectRnaSeqMetrics.class - [JAR]

├─ picard.analysis.CollectRrbsMetrics.class - [JAR]

├─ picard.analysis.CollectWgsMetrics.class - [JAR]

├─ picard.analysis.CollectWgsMetricsWithNonZeroCoverage.class - [JAR]

├─ picard.analysis.CompareMetrics.class - [JAR]

├─ picard.analysis.CounterManager.class - [JAR]

├─ picard.analysis.CpgLocation.class - [JAR]

├─ picard.analysis.FastWgsMetricsCollector.class - [JAR]

├─ picard.analysis.FingerprintingDetailMetrics.class - [JAR]

├─ picard.analysis.FingerprintingSummaryMetrics.class - [JAR]

├─ picard.analysis.GcBiasCollectorArgs.class - [JAR]

├─ picard.analysis.GcBiasDetailMetrics.class - [JAR]

├─ picard.analysis.GcBiasMetricsCollector.class - [JAR]

├─ picard.analysis.GcBiasSummaryMetrics.class - [JAR]

├─ picard.analysis.GcBiasUtils.class - [JAR]

├─ picard.analysis.HistogramGenerator.class - [JAR]

├─ picard.analysis.InsertSizeMetrics.class - [JAR]

├─ picard.analysis.JumpingLibraryMetrics.class - [JAR]

├─ picard.analysis.MeanQualityByCycle.class - [JAR]

├─ picard.analysis.MergeableMetricBase.class - [JAR]

├─ picard.analysis.MetricAccumulationLevel.class - [JAR]

├─ picard.analysis.QualityScoreDistribution.class - [JAR]

├─ picard.analysis.RnaSeqMetrics.class - [JAR]

├─ picard.analysis.RrbsCpgDetailMetrics.class - [JAR]

├─ picard.analysis.RrbsMetrics.class - [JAR]

├─ picard.analysis.RrbsMetricsCollector.class - [JAR]

├─ picard.analysis.RrbsSummaryMetrics.class - [JAR]

├─ picard.analysis.SinglePassSamProgram.class - [JAR]

├─ picard.analysis.TheoreticalSensitivity.class - [JAR]

├─ picard.analysis.TheoreticalSensitivityMetrics.class - [JAR]

├─ picard.analysis.WgsMetrics.class - [JAR]

├─ picard.analysis.WgsMetricsProcessor.class - [JAR]

├─ picard.analysis.WgsMetricsProcessorImpl.class - [JAR]

picard.util.help

├─ picard.util.help.HelpConstants.class - [JAR]

├─ picard.util.help.PicardHelpDocWorkUnitHandler.class - [JAR]

├─ picard.util.help.PicardHelpDoclet.class - [JAR]

picard.fingerprint

├─ picard.fingerprint.CalculateFingerprintMetrics.class - [JAR]

├─ picard.fingerprint.CappedHaplotypeProbabilities.class - [JAR]

├─ picard.fingerprint.CheckFingerprint.class - [JAR]

├─ picard.fingerprint.ClusterCrosscheckMetrics.class - [JAR]

├─ picard.fingerprint.ClusteredCrosscheckMetric.class - [JAR]

├─ picard.fingerprint.ConvertHaplotypeDatabaseToVcf.class - [JAR]

├─ picard.fingerprint.CrosscheckFingerprints.class - [JAR]

├─ picard.fingerprint.CrosscheckMetric.class - [JAR]

├─ picard.fingerprint.CrosscheckReadGroupFingerprints.class - [JAR]

├─ picard.fingerprint.DiploidGenotype.class - [JAR]

├─ picard.fingerprint.DiploidHaplotype.class - [JAR]

├─ picard.fingerprint.ExtractFingerprint.class - [JAR]

├─ picard.fingerprint.Fingerprint.class - [JAR]

├─ picard.fingerprint.FingerprintChecker.class - [JAR]

├─ picard.fingerprint.FingerprintIdDetails.class - [JAR]

├─ picard.fingerprint.FingerprintMetrics.class - [JAR]

├─ picard.fingerprint.FingerprintResults.class - [JAR]

├─ picard.fingerprint.FingerprintUtils.class - [JAR]

├─ picard.fingerprint.HaplotypeBlock.class - [JAR]

├─ picard.fingerprint.HaplotypeMap.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilities.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilitiesFromContaminatorSequence.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilitiesFromGenotype.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilitiesFromGenotypeLikelihoods.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilitiesFromSequence.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilitiesUsingLogLikelihoods.class - [JAR]

├─ picard.fingerprint.HaplotypeProbabilityOfNormalGivenTumor.class - [JAR]

├─ picard.fingerprint.IdentifyContaminant.class - [JAR]

├─ picard.fingerprint.LiftOverHaplotypeMap.class - [JAR]

├─ picard.fingerprint.LocusResult.class - [JAR]

├─ picard.fingerprint.MatchResults.class - [JAR]

├─ picard.fingerprint.Snp.class - [JAR]

picard.sam.SamErrorMetric

├─ picard.sam.SamErrorMetric.BaseCalculator.class - [JAR]

├─ picard.sam.SamErrorMetric.BaseErrorAggregation.class - [JAR]

├─ picard.sam.SamErrorMetric.BaseErrorCalculator.class - [JAR]

├─ picard.sam.SamErrorMetric.BaseErrorMetric.class - [JAR]

├─ picard.sam.SamErrorMetric.CollectSamErrorMetrics.class - [JAR]

├─ picard.sam.SamErrorMetric.ErrorMetric.class - [JAR]

├─ picard.sam.SamErrorMetric.ErrorType.class - [JAR]

├─ picard.sam.SamErrorMetric.IndelErrorCalculator.class - [JAR]

├─ picard.sam.SamErrorMetric.IndelErrorMetric.class - [JAR]

├─ picard.sam.SamErrorMetric.OverlappingErrorMetric.class - [JAR]

├─ picard.sam.SamErrorMetric.OverlappingReadsErrorCalculator.class - [JAR]

├─ picard.sam.SamErrorMetric.ReadBaseStratification.class - [JAR]

├─ picard.sam.SamErrorMetric.SimpleErrorCalculator.class - [JAR]

picard.annotation

├─ picard.annotation.AnnotationException.class - [JAR]

├─ picard.annotation.Gene.class - [JAR]

├─ picard.annotation.GeneAnnotationReader.class - [JAR]

├─ picard.annotation.LocusFunction.class - [JAR]

├─ picard.annotation.RefFlatReader.class - [JAR]

├─ picard.annotation.SortGff.class - [JAR]

picard

├─ picard.PicardException.class - [JAR]

├─ picard.Test.class - [JAR]

picard.sam

├─ picard.sam.AbstractAlignmentMerger.class - [JAR]

├─ picard.sam.AddCommentsToBam.class - [JAR]

├─ picard.sam.AddOATag.class - [JAR]

├─ picard.sam.AddOrReplaceReadGroups.class - [JAR]

├─ picard.sam.BamIndexStats.class - [JAR]

├─ picard.sam.BestEndMapqPrimaryAlignmentStrategy.class - [JAR]

├─ picard.sam.BestMapqPrimaryAlignmentSelectionStrategy.class - [JAR]

├─ picard.sam.BuildBamIndex.class - [JAR]

├─ picard.sam.CalculateReadGroupChecksum.class - [JAR]

├─ picard.sam.CheckTerminatorBlock.class - [JAR]

├─ picard.sam.CleanSam.class - [JAR]

├─ picard.sam.CompareSAMs.class - [JAR]

├─ picard.sam.CreateSequenceDictionary.class - [JAR]

├─ picard.sam.DownsampleSam.class - [JAR]

├─ picard.sam.DuplicationMetrics.class - [JAR]

├─ picard.sam.DuplicationMetricsFactory.class - [JAR]

├─ picard.sam.EarliestFragmentPrimaryAlignmentSelectionStrategy.class - [JAR]

├─ picard.sam.FastqToSam.class - [JAR]

├─ picard.sam.FilterSamReads.class - [JAR]

├─ picard.sam.FixMateInformation.class - [JAR]

├─ picard.sam.FlowBasedDuplicationMetrics.class - [JAR]

├─ picard.sam.GatherBamFiles.class - [JAR]

├─ picard.sam.HitsForInsert.class - [JAR]

├─ picard.sam.MergeBamAlignment.class - [JAR]

├─ picard.sam.MergeSamFiles.class - [JAR]

├─ picard.sam.MostDistantPrimaryAlignmentSelectionStrategy.class - [JAR]

├─ picard.sam.MultiHitAlignedReadIterator.class - [JAR]

├─ picard.sam.PositionBasedDownsampleSam.class - [JAR]

├─ picard.sam.PrimaryAlignmentSelectionStrategy.class - [JAR]

├─ picard.sam.ReorderSam.class - [JAR]

├─ picard.sam.ReplaceSamHeader.class - [JAR]

├─ picard.sam.RevertOriginalBaseQualitiesAndAddMateCigar.class - [JAR]

├─ picard.sam.RevertSam.class - [JAR]

├─ picard.sam.SamAlignmentMerger.class - [JAR]

├─ picard.sam.SamComparisonMetric.class - [JAR]

├─ picard.sam.SamFormatConverter.class - [JAR]

├─ picard.sam.SamToFastq.class - [JAR]

├─ picard.sam.SamToFastqWithTags.class - [JAR]

├─ picard.sam.SetNmAndUqTags.class - [JAR]

├─ picard.sam.SetNmMdAndUqTags.class - [JAR]

├─ picard.sam.SortSam.class - [JAR]

├─ picard.sam.SplitSamByLibrary.class - [JAR]

├─ picard.sam.SplitSamByNumberOfReads.class - [JAR]

├─ picard.sam.ValidateSamFile.class - [JAR]

├─ picard.sam.ViewSam.class - [JAR]

picard.sam.util

├─ picard.sam.util.PGTagArgumentCollection.class - [JAR]

├─ picard.sam.util.Pair.class - [JAR]

├─ picard.sam.util.PhysicalLocation.class - [JAR]

├─ picard.sam.util.PhysicalLocationInt.class - [JAR]

├─ picard.sam.util.PhysicalLocationShort.class - [JAR]

├─ picard.sam.util.PrimaryAlignmentKey.class - [JAR]

├─ picard.sam.util.ReadNameParser.class - [JAR]

├─ picard.sam.util.RepresentativeReadIndexer.class - [JAR]

├─ picard.sam.util.SAMComparisonArgumentCollection.class - [JAR]

├─ picard.sam.util.SamComparison.class - [JAR]

picard.cmdline.argumentcollections

├─ picard.cmdline.argumentcollections.EmptyOutputArgumentCollection.class - [JAR]

├─ picard.cmdline.argumentcollections.IntervalArgumentCollection.class - [JAR]

├─ picard.cmdline.argumentcollections.OptionalReferenceArgumentCollection.class - [JAR]

├─ picard.cmdline.argumentcollections.OutputArgumentCollection.class - [JAR]

├─ picard.cmdline.argumentcollections.ReferenceArgumentCollection.class - [JAR]

├─ picard.cmdline.argumentcollections.RequiredOutputArgumentCollection.class - [JAR]

├─ picard.cmdline.argumentcollections.RequiredReferenceArgumentCollection.class - [JAR]

picard.illumina.parser.readers

├─ picard.illumina.parser.readers.AbstractIlluminaPositionFileReader.class - [JAR]

├─ picard.illumina.parser.readers.BarcodeFileReader.class - [JAR]

├─ picard.illumina.parser.readers.BaseBclReader.class - [JAR]

├─ picard.illumina.parser.readers.BclIndexReader.class - [JAR]

├─ picard.illumina.parser.readers.BclQualityEvaluationStrategy.class - [JAR]

├─ picard.illumina.parser.readers.BclReader.class - [JAR]

├─ picard.illumina.parser.readers.BinaryFileIterator.class - [JAR]

├─ picard.illumina.parser.readers.CbclReader.class - [JAR]

├─ picard.illumina.parser.readers.ClocsFileReader.class - [JAR]

├─ picard.illumina.parser.readers.EmpiricalPhasingMetricsOutReader.class - [JAR]

├─ picard.illumina.parser.readers.FilterFileReader.class - [JAR]

├─ picard.illumina.parser.readers.LocsFileReader.class - [JAR]

├─ picard.illumina.parser.readers.MMapBackedIteratorFactory.class - [JAR]

├─ picard.illumina.parser.readers.PosFileReader.class - [JAR]

├─ picard.illumina.parser.readers.TileMetricsOutReader.class - [JAR]

picard.reference

├─ picard.reference.ExtractSequences.class - [JAR]

├─ picard.reference.NonNFastaSize.class - [JAR]

├─ picard.reference.NormalizeFasta.class - [JAR]

picard.metrics

├─ picard.metrics.GcBiasMetrics.class - [JAR]

├─ picard.metrics.MultiLevelCollector.class - [JAR]

├─ picard.metrics.MultilevelMetrics.class - [JAR]

├─ picard.metrics.PerUnitMetricCollector.class - [JAR]

├─ picard.metrics.SAMRecordAndReference.class - [JAR]

├─ picard.metrics.SAMRecordAndReferenceMultiLevelCollector.class - [JAR]

├─ picard.metrics.SAMRecordMultiLevelCollector.class - [JAR]

picard.illumina.quality

├─ picard.illumina.quality.CollectHiSeqXPfFailMetrics.class - [JAR]

picard.analysis.replicates

├─ picard.analysis.replicates.CollectIndependentReplicateMetrics.class - [JAR]

├─ picard.analysis.replicates.IndependentReplicateMetric.class - [JAR]

picard.util

├─ picard.util.AbstractInputParser.class - [JAR]

├─ picard.util.AccumulateQualityYieldMetrics.class - [JAR]

├─ picard.util.AdapterMarker.class - [JAR]

├─ picard.util.AdapterPair.class - [JAR]

├─ picard.util.AlleleSubsettingUtils.class - [JAR]

├─ picard.util.AsyncIterator.class - [JAR]

├─ picard.util.AtomicIterator.class - [JAR]

├─ picard.util.BaitDesigner.class - [JAR]

├─ picard.util.BarcodeEditDistanceQuery.class - [JAR]

├─ picard.util.BasicInputParser.class - [JAR]

├─ picard.util.BedToIntervalList.class - [JAR]

├─ picard.util.CircularByteBuffer.class - [JAR]

├─ picard.util.ClippingUtility.class - [JAR]

├─ picard.util.CsvInputParser.class - [JAR]

├─ picard.util.DbSnpBitSetUtil.class - [JAR]

├─ picard.util.DelimitedTextFileWithHeaderIterator.class - [JAR]

├─ picard.util.FifoBuffer.class - [JAR]

├─ picard.util.GraphUtils.class - [JAR]

├─ picard.util.IlluminaUtil.class - [JAR]

├─ picard.util.IntervalListToBed.class - [JAR]

├─ picard.util.IntervalListTools.class - [JAR]

├─ picard.util.Iterators.class - [JAR]

├─ picard.util.LiftOverIntervalList.class - [JAR]

├─ picard.util.LiftoverUtils.class - [JAR]

├─ picard.util.MathUtil.class - [JAR]

├─ picard.util.PropertyUtils.class - [JAR]

├─ picard.util.QuerySortedReadPairIteratorUtil.class - [JAR]

├─ picard.util.RExecutor.class - [JAR]

├─ picard.util.ReflectionUtil.class - [JAR]

├─ picard.util.ScatterIntervalsByNs.class - [JAR]

├─ picard.util.SequenceDictionaryUtils.class - [JAR]

├─ picard.util.SingleBarcodeDistanceMetric.class - [JAR]

├─ picard.util.TabbedInputParser.class - [JAR]

├─ picard.util.TabbedTextFileWithHeaderParser.class - [JAR]

├─ picard.util.ThreadPoolExecutorUtil.class - [JAR]

├─ picard.util.ThreadPoolExecutorWithExceptions.class - [JAR]

├─ picard.util.UnsignedTypeUtil.class - [JAR]

├─ picard.util.VariantType.class - [JAR]

picard.fastq

├─ picard.fastq.BamToBfq.class - [JAR]

├─ picard.fastq.BamToBfqWriter.class - [JAR]

├─ picard.fastq.Casava18ReadNameEncoder.class - [JAR]

├─ picard.fastq.IlluminaReadNameEncoder.class - [JAR]

├─ picard.fastq.ReadNameEncoder.class - [JAR]

├─ picard.fastq.SamToBfqWriter.class - [JAR]

picard.illumina

├─ picard.illumina.BarcodeExtractor.class - [JAR]

├─ picard.illumina.BarcodeMetric.class - [JAR]

├─ picard.illumina.BasecallsConverter.class - [JAR]

├─ picard.illumina.BasecallsConverterBuilder.class - [JAR]

├─ picard.illumina.CheckIlluminaDirectory.class - [JAR]

├─ picard.illumina.ClusterDataToSamConverter.class - [JAR]

├─ picard.illumina.CollectIlluminaBasecallingMetrics.class - [JAR]

├─ picard.illumina.CollectIlluminaLaneMetrics.class - [JAR]

├─ picard.illumina.CustomAdapterPair.class - [JAR]

├─ picard.illumina.DistanceMetric.class - [JAR]

├─ picard.illumina.ExtractBarcodesProgram.class - [JAR]

├─ picard.illumina.ExtractIlluminaBarcodes.class - [JAR]

├─ picard.illumina.IlluminaBasecallingMetrics.class - [JAR]

├─ picard.illumina.IlluminaBasecallsToFastq.class - [JAR]

├─ picard.illumina.IlluminaBasecallsToSam.class - [JAR]

├─ picard.illumina.IlluminaLaneMetrics.class - [JAR]

├─ picard.illumina.IlluminaPhasingMetrics.class - [JAR]

├─ picard.illumina.LanePhasingMetricsCollector.class - [JAR]

├─ picard.illumina.MarkIlluminaAdapters.class - [JAR]

├─ picard.illumina.SortedBasecallsConverter.class - [JAR]

├─ picard.illumina.UnsortedBasecallsConverter.class - [JAR]

picard.pedigree

├─ picard.pedigree.PedFile.class - [JAR]

├─ picard.pedigree.Sex.class - [JAR]

picard.analysis.directed

├─ picard.analysis.directed.CollectHsMetrics.class - [JAR]

├─ picard.analysis.directed.CollectTargetedMetrics.class - [JAR]

├─ picard.analysis.directed.CollectTargetedPcrMetrics.class - [JAR]

├─ picard.analysis.directed.HsMetricCollector.class - [JAR]

├─ picard.analysis.directed.HsMetrics.class - [JAR]

├─ picard.analysis.directed.InsertSizeCollectorArgs.class - [JAR]

├─ picard.analysis.directed.InsertSizeMetricsCollector.class - [JAR]

├─ picard.analysis.directed.PanelMetricsBase.class - [JAR]

├─ picard.analysis.directed.RnaSeqMetricsCollector.class - [JAR]

├─ picard.analysis.directed.TargetMetrics.class - [JAR]

├─ picard.analysis.directed.TargetMetricsBase.class - [JAR]

├─ picard.analysis.directed.TargetMetricsCollector.class - [JAR]

├─ picard.analysis.directed.TargetedPcrMetrics.class - [JAR]

├─ picard.analysis.directed.TargetedPcrMetricsCollector.class - [JAR]

picard.analysis.artifacts

├─ picard.analysis.artifacts.ArtifactCounter.class - [JAR]

├─ picard.analysis.artifacts.CollectSequencingArtifactMetrics.class - [JAR]

├─ picard.analysis.artifacts.ContextAccumulator.class - [JAR]

├─ picard.analysis.artifacts.ConvertSequencingArtifactToOxoG.class - [JAR]

├─ picard.analysis.artifacts.ErrorSummaryMetrics.class - [JAR]

├─ picard.analysis.artifacts.SequencingArtifactMetrics.class - [JAR]

├─ picard.analysis.artifacts.Transition.class - [JAR]

picard.sam.markduplicates.util

├─ picard.sam.markduplicates.util.AbstractMarkDuplicatesCommandLineProgram.class - [JAR]

├─ picard.sam.markduplicates.util.AbstractOpticalDuplicateFinderCommandLineProgram.class - [JAR]

├─ picard.sam.markduplicates.util.DiskBasedReadEndsForMarkDuplicatesMap.class - [JAR]

├─ picard.sam.markduplicates.util.LibraryIdGenerator.class - [JAR]

├─ picard.sam.markduplicates.util.MarkQueue.class - [JAR]

├─ picard.sam.markduplicates.util.MemoryBasedReadEndsForMarkDuplicatesMap.class - [JAR]

├─ picard.sam.markduplicates.util.OpticalDuplicateFinder.class - [JAR]

├─ picard.sam.markduplicates.util.PhysicalLocationForMateCigar.class - [JAR]

├─ picard.sam.markduplicates.util.PhysicalLocationForMateCigarSet.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEnds.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEndsForMarkDuplicates.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesCodec.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesMap.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesWithBarcodes.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesWithBarcodesCodec.class - [JAR]

├─ picard.sam.markduplicates.util.ReadEndsForMateCigar.class - [JAR]

├─ picard.sam.markduplicates.util.RepresentativeReadIndexerCodec.class - [JAR]

├─ picard.sam.markduplicates.util.SamRecordWithOrdinalAndSetDuplicateReadFlag.class - [JAR]

picard.cmdline.programgroups

├─ picard.cmdline.programgroups.BaseCallingProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.DiagnosticsAndQCProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.GenotypingArraysProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.IntervalsManipulationProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.OtherProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.ReadDataManipulationProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.ReferenceProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.Testing.class - [JAR]

├─ picard.cmdline.programgroups.VariantEvaluationProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.VariantFilteringProgramGroup.class - [JAR]

├─ picard.cmdline.programgroups.VariantManipulationProgramGroup.class - [JAR]

picard.filter

├─ picard.filter.CountingAdapterFilter.class - [JAR]

├─ picard.filter.CountingDuplicateFilter.class - [JAR]

├─ picard.filter.CountingFilter.class - [JAR]

├─ picard.filter.CountingMapQFilter.class - [JAR]

├─ picard.filter.CountingPairedFilter.class - [JAR]

picard.sam.markduplicates

├─ picard.sam.markduplicates.CheckDuplicateMarking.class - [JAR]

├─ picard.sam.markduplicates.CollectDuplicateMetrics.class - [JAR]

├─ picard.sam.markduplicates.ElcDuplicatesFinder.class - [JAR]

├─ picard.sam.markduplicates.ElcDuplicatesFinderResolver.class - [JAR]

├─ picard.sam.markduplicates.ElcHashBasedDuplicatesFinder.class - [JAR]

├─ picard.sam.markduplicates.ElcIdenticalBasesDuplicatesFinder.class - [JAR]

├─ picard.sam.markduplicates.EstimateLibraryComplexity.class - [JAR]

├─ picard.sam.markduplicates.MarkDuplicates.class - [JAR]

├─ picard.sam.markduplicates.MarkDuplicatesForFlowArgumentCollection.class - [JAR]

├─ picard.sam.markduplicates.MarkDuplicatesForFlowHelper.class - [JAR]

├─ picard.sam.markduplicates.MarkDuplicatesHelper.class - [JAR]

├─ picard.sam.markduplicates.MarkDuplicatesWithMateCigar.class - [JAR]

├─ picard.sam.markduplicates.MarkDuplicatesWithMateCigarIterator.class - [JAR]

├─ picard.sam.markduplicates.SimpleMarkDuplicatesWithMateCigar.class - [JAR]

├─ picard.sam.markduplicates.UmiAwareDuplicateSetIterator.class - [JAR]

├─ picard.sam.markduplicates.UmiAwareMarkDuplicatesWithMateCigar.class - [JAR]

├─ picard.sam.markduplicates.UmiGraph.class - [JAR]

├─ picard.sam.markduplicates.UmiMetrics.class - [JAR]

├─ picard.sam.markduplicates.UmiUtil.class - [JAR]

picard.illumina.parser

├─ picard.illumina.parser.BarcodeData.class - [JAR]

├─ picard.illumina.parser.BarcodeParser.class - [JAR]

├─ picard.illumina.parser.BaseData.class - [JAR]

├─ picard.illumina.parser.BaseIlluminaDataProvider.class - [JAR]

├─ picard.illumina.parser.BclData.class - [JAR]

├─ picard.illumina.parser.BclParser.class - [JAR]

├─ picard.illumina.parser.CbclData.class - [JAR]

├─ picard.illumina.parser.ClusterData.class - [JAR]

├─ picard.illumina.parser.CycleIlluminaFileMap.class - [JAR]

├─ picard.illumina.parser.FilterParser.class - [JAR]

├─ picard.illumina.parser.IlluminaData.class - [JAR]

├─ picard.illumina.parser.IlluminaDataProvider.class - [JAR]

├─ picard.illumina.parser.IlluminaDataProviderFactory.class - [JAR]

├─ picard.illumina.parser.IlluminaDataType.class - [JAR]

├─ picard.illumina.parser.IlluminaFileMap.class - [JAR]

├─ picard.illumina.parser.IlluminaFileNotFoundException.class - [JAR]

├─ picard.illumina.parser.IlluminaFileUtil.class - [JAR]

├─ picard.illumina.parser.IlluminaMetricsCode.class - [JAR]

├─ picard.illumina.parser.IlluminaParser.class - [JAR]

├─ picard.illumina.parser.IlluminaTextIterator.class - [JAR]

├─ picard.illumina.parser.IntensityChannel.class - [JAR]

├─ picard.illumina.parser.MultiTileBclFileUtil.class - [JAR]

├─ picard.illumina.parser.MultiTileBclParser.class - [JAR]

├─ picard.illumina.parser.MultiTileFileUtil.class - [JAR]

├─ picard.illumina.parser.MultiTileFilterFileUtil.class - [JAR]

├─ picard.illumina.parser.MultiTileFilterParser.class - [JAR]

├─ picard.illumina.parser.MultiTileLocsFileUtil.class - [JAR]

├─ picard.illumina.parser.MultiTileLocsParser.class - [JAR]

├─ picard.illumina.parser.MultiTileParser.class - [JAR]

├─ picard.illumina.parser.NewIlluminaDataProvider.class - [JAR]

├─ picard.illumina.parser.OutputMapping.class - [JAR]

├─ picard.illumina.parser.ParameterizedFileUtil.class - [JAR]

├─ picard.illumina.parser.PerTileCycleParser.class - [JAR]

├─ picard.illumina.parser.PerTileFileUtil.class - [JAR]

├─ picard.illumina.parser.PerTileOrPerRunFileUtil.class - [JAR]

├─ picard.illumina.parser.PerTileParser.class - [JAR]

├─ picard.illumina.parser.PerTilePerCycleFileUtil.class - [JAR]

├─ picard.illumina.parser.PfData.class - [JAR]

├─ picard.illumina.parser.PosParser.class - [JAR]

├─ picard.illumina.parser.PositionalData.class - [JAR]

├─ picard.illumina.parser.QualityData.class - [JAR]

├─ picard.illumina.parser.Range.class - [JAR]

├─ picard.illumina.parser.ReadData.class - [JAR]

├─ picard.illumina.parser.ReadDescriptor.class - [JAR]

├─ picard.illumina.parser.ReadStructure.class - [JAR]

├─ picard.illumina.parser.ReadType.class - [JAR]

├─ picard.illumina.parser.Tile.class - [JAR]

├─ picard.illumina.parser.TileIndex.class - [JAR]

├─ picard.illumina.parser.TileMetricsUtil.class - [JAR]

├─ picard.illumina.parser.TilePhasingValue.class - [JAR]

├─ picard.illumina.parser.TileTemplateRead.class - [JAR]

picard.arrays

├─ picard.arrays.ArraysCallingMetricAccumulator.class - [JAR]

├─ picard.arrays.BafRegressMetrics.class - [JAR]

├─ picard.arrays.CollectArraysVariantCallingMetrics.class - [JAR]

├─ picard.arrays.CombineGenotypingArrayVcfs.class - [JAR]

├─ picard.arrays.CreateBafRegressMetricsFile.class - [JAR]

├─ picard.arrays.CreateVerifyIDIntensityContaminationMetricsFile.class - [JAR]

├─ picard.arrays.GtcToVcf.class - [JAR]

├─ picard.arrays.MergePedIntoVcf.class - [JAR]

├─ picard.arrays.VcfToAdpc.class - [JAR]

├─ picard.arrays.VerifyIDIntensityContaminationMetrics.class - [JAR]

├─ picard.arrays.ZCallPedFile.class - [JAR]

picard.vcf.processor

├─ picard.vcf.processor.VariantAccumulatorExecutor.class - [JAR]

├─ picard.vcf.processor.VariantIteratorProducer.class - [JAR]

├─ picard.vcf.processor.VariantProcessor.class - [JAR]

├─ picard.vcf.processor.VcfFileSegment.class - [JAR]

├─ picard.vcf.processor.VcfFileSegmentGenerator.class - [JAR]

├─ picard.vcf.processor.VcfPathSegment.class - [JAR]

├─ picard.vcf.processor.VcfPathSegmentGenerator.class - [JAR]

picard.vcf.filter

├─ picard.vcf.filter.AlleleBalanceFilter.class - [JAR]

├─ picard.vcf.filter.DepthFilter.class - [JAR]

├─ picard.vcf.filter.FilterApplyingVariantIterator.class - [JAR]

├─ picard.vcf.filter.FilterVcf.class - [JAR]

├─ picard.vcf.filter.FisherStrandFilter.class - [JAR]

├─ picard.vcf.filter.GenotypeFilter.class - [JAR]

├─ picard.vcf.filter.GenotypeQualityFilter.class - [JAR]

├─ picard.vcf.filter.QdFilter.class - [JAR]

├─ picard.vcf.filter.VariantFilter.class - [JAR]

picard.util.IntervalList

├─ picard.util.IntervalList.IntervalListScatter.class - [JAR]

├─ picard.util.IntervalList.IntervalListScatterMode.class - [JAR]

├─ picard.util.IntervalList.IntervalListScatterer.class - [JAR]

├─ picard.util.IntervalList.IntervalListScattererByBaseCount.class - [JAR]

├─ picard.util.IntervalList.IntervalListScattererByIntervalCount.class - [JAR]

├─ picard.util.IntervalList.IntervalListScattererByIntervalCountWithDistributedRemainder.class - [JAR]

├─ picard.util.IntervalList.IntervalListScattererWithSubdivision.class - [JAR]

├─ picard.util.IntervalList.IntervalListScattererWithoutSubdivision.class - [JAR]

├─ picard.util.IntervalList.IntervalListScattererWithoutSubdivisionWithOverflow.class - [JAR]

com.github.broadinstitute : picard

Maven & Gradle

Picard · A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Latest Version

All Versions

Download com.github.broadinstitute : picard JAR file - All Versions:

View Java Class Source Code in JAR file