View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window nextflow-gooalgene-18.11.0-edge.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
nextflow.cloud.aws
├─ nextflow.cloud.aws.AmazonCloudDriver.class - [JAR]
├─ nextflow.cloud.aws.AmazonPriceReader.class - [JAR]
├─ nextflow.cloud.aws.CloudBootTemplateBinding.class - [JAR]
nextflow.sort
├─ nextflow.sort.BigSort.class - [JAR]
├─ nextflow.sort.LevelDbSort.class - [JAR]
nextflow
├─ nextflow.CacheDB.class - [JAR]
├─ nextflow.Channel.class - [JAR]
├─ nextflow.Const.class - [JAR]
├─ nextflow.Nextflow.class - [JAR]
├─ nextflow.Session.class - [JAR]
nextflow.ast
├─ nextflow.ast.LangHelpers.class - [JAR]
├─ nextflow.ast.NextflowDSL.class - [JAR]
├─ nextflow.ast.NextflowDSLImpl.class - [JAR]
├─ nextflow.ast.NextflowXform.class - [JAR]
├─ nextflow.ast.NextflowXformImpl.class - [JAR]
nextflow.script
├─ nextflow.script.BaseInParam.class - [JAR]
├─ nextflow.script.BaseOutParam.class - [JAR]
├─ nextflow.script.BaseParam.class - [JAR]
├─ nextflow.script.BaseScript.class - [JAR]
├─ nextflow.script.BasicMode.class - [JAR]
├─ nextflow.script.DefaultInParam.class - [JAR]
├─ nextflow.script.DefaultOutParam.class - [JAR]
├─ nextflow.script.EachInParam.class - [JAR]
├─ nextflow.script.EnvInParam.class - [JAR]
├─ nextflow.script.FileInParam.class - [JAR]
├─ nextflow.script.FileOutParam.class - [JAR]
├─ nextflow.script.InParam.class - [JAR]
├─ nextflow.script.InputsList.class - [JAR]
├─ nextflow.script.MissingParam.class - [JAR]
├─ nextflow.script.OptionalParam.class - [JAR]
├─ nextflow.script.OutParam.class - [JAR]
├─ nextflow.script.OutputsList.class - [JAR]
├─ nextflow.script.ScriptBinding.class - [JAR]
├─ nextflow.script.ScriptFile.class - [JAR]
├─ nextflow.script.ScriptRunner.class - [JAR]
├─ nextflow.script.ScriptType.class - [JAR]
├─ nextflow.script.SetInParam.class - [JAR]
├─ nextflow.script.SetOutParam.class - [JAR]
├─ nextflow.script.StdInParam.class - [JAR]
├─ nextflow.script.StdOutParam.class - [JAR]
├─ nextflow.script.TaskBody.class - [JAR]
├─ nextflow.script.TaskClosure.class - [JAR]
├─ nextflow.script.TokenEnvCall.class - [JAR]
├─ nextflow.script.TokenFileCall.class - [JAR]
├─ nextflow.script.TokenStdinCall.class - [JAR]
├─ nextflow.script.TokenStdoutCall.class - [JAR]
├─ nextflow.script.TokenValCall.class - [JAR]
├─ nextflow.script.TokenValRef.class - [JAR]
├─ nextflow.script.TokenVar.class - [JAR]
├─ nextflow.script.ValueInParam.class - [JAR]
├─ nextflow.script.ValueOutParam.class - [JAR]
├─ nextflow.script.WorkflowMetadata.class - [JAR]
├─ nextflow.script.WorkflowNotifier.class - [JAR]
nextflow.cloud.aws.batch
├─ nextflow.cloud.aws.batch.AwsBatchExecutor.class - [JAR]
├─ nextflow.cloud.aws.batch.AwsBatchFileCopyStrategy.class - [JAR]
├─ nextflow.cloud.aws.batch.AwsBatchProxy.class - [JAR]
├─ nextflow.cloud.aws.batch.AwsBatchScriptLauncher.class - [JAR]
├─ nextflow.cloud.aws.batch.AwsBatchTaskHandler.class - [JAR]
├─ nextflow.cloud.aws.batch.AwsOptions.class - [JAR]
├─ nextflow.cloud.aws.batch.S3Helper.class - [JAR]
nextflow.file
├─ nextflow.file.DirWatcher.class - [JAR]
├─ nextflow.file.FileCollector.class - [JAR]
├─ nextflow.file.FilePorter.class - [JAR]
├─ nextflow.file.PathVisitor.class - [JAR]
├─ nextflow.file.SequentialFileStore.class - [JAR]
├─ nextflow.file.SimpleFileCollector.class - [JAR]
├─ nextflow.file.SortFileCollector.class - [JAR]
nextflow.extension
├─ nextflow.extension.BufferOp.class - [JAR]
├─ nextflow.extension.CaptureProperties.class - [JAR]
├─ nextflow.extension.ChoiceOp.class - [JAR]
├─ nextflow.extension.CollectFileOp.class - [JAR]
├─ nextflow.extension.CollectOp.class - [JAR]
├─ nextflow.extension.CombineOp.class - [JAR]
├─ nextflow.extension.ConcatOp.class - [JAR]
├─ nextflow.extension.CrossOp.class - [JAR]
├─ nextflow.extension.DataflowExtensions.class - [JAR]
├─ nextflow.extension.DataflowHelper.class - [JAR]
├─ nextflow.extension.DefaultMergeClosure.class - [JAR]
├─ nextflow.extension.DumpOp.class - [JAR]
├─ nextflow.extension.GroupKey.class - [JAR]
├─ nextflow.extension.GroupTupleOp.class - [JAR]
├─ nextflow.extension.IntoOp.class - [JAR]
├─ nextflow.extension.JoinOp.class - [JAR]
├─ nextflow.extension.KeyPair.class - [JAR]
├─ nextflow.extension.MapOp.class - [JAR]
├─ nextflow.extension.PhaseOp.class - [JAR]
├─ nextflow.extension.RandomSampleOp.class - [JAR]
├─ nextflow.extension.SeparateOp.class - [JAR]
├─ nextflow.extension.SplitOp.class - [JAR]
├─ nextflow.extension.SplitterMergeClosure.class - [JAR]
├─ nextflow.extension.TapOp.class - [JAR]
├─ nextflow.extension.ToListOp.class - [JAR]
├─ nextflow.extension.TransposeOp.class - [JAR]
nextflow.dag
├─ nextflow.dag.CytoscapeHtmlRenderer.class - [JAR]
├─ nextflow.dag.CytoscapeJsRenderer.class - [JAR]
├─ nextflow.dag.DAG.class - [JAR]
├─ nextflow.dag.DagRenderer.class - [JAR]
├─ nextflow.dag.DotRenderer.class - [JAR]
├─ nextflow.dag.GraphvizRenderer.class - [JAR]
├─ nextflow.dag.MultipleInputChannelException.class - [JAR]
├─ nextflow.dag.MultipleOutputChannelException.class - [JAR]
├─ nextflow.dag.NodeMarker.class - [JAR]
nextflow.container
├─ nextflow.container.ContainerBuilder.class - [JAR]
├─ nextflow.container.ContainerConfig.class - [JAR]
├─ nextflow.container.ContainerHandler.class - [JAR]
├─ nextflow.container.ContainerScriptTokens.class - [JAR]
├─ nextflow.container.DockerBuilder.class - [JAR]
├─ nextflow.container.ShifterBuilder.class - [JAR]
├─ nextflow.container.SingularityBuilder.class - [JAR]
├─ nextflow.container.SingularityCache.class - [JAR]
├─ nextflow.container.UdockerBuilder.class - [JAR]
nextflow.daemon
├─ nextflow.daemon.DaemonLauncher.class - [JAR]
groovy.runtime.metaclass
├─ groovy.runtime.metaclass.CustomMetaClassCreationHandle.class - [JAR]
├─ groovy.runtime.metaclass.NextflowDelegatingMetaClass.class - [JAR]
├─ groovy.runtime.metaclass.NumberDelegatingMetaClass.class - [JAR]
nextflow.mail
├─ nextflow.mail.Attachment.class - [JAR]
├─ nextflow.mail.Mail.class - [JAR]
├─ nextflow.mail.Mailer.class - [JAR]
nextflow.cloud.types
├─ nextflow.cloud.types.CloudInstance.class - [JAR]
├─ nextflow.cloud.types.CloudInstanceStatus.class - [JAR]
├─ nextflow.cloud.types.CloudInstanceType.class - [JAR]
├─ nextflow.cloud.types.CloudSpotPrice.class - [JAR]
nextflow.conda
├─ nextflow.conda.CondaCache.class - [JAR]
├─ nextflow.conda.CondaConfig.class - [JAR]
nextflow.executor
├─ nextflow.executor.AbstractGridExecutor.class - [JAR]
├─ nextflow.executor.BashWrapperBuilder.class - [JAR]
├─ nextflow.executor.BatchCleanup.class - [JAR]
├─ nextflow.executor.CachedTaskHandler.class - [JAR]
├─ nextflow.executor.CondorExecutor.class - [JAR]
├─ nextflow.executor.CrgExecutor.class - [JAR]
├─ nextflow.executor.Executor.class - [JAR]
├─ nextflow.executor.GridTaskHandler.class - [JAR]
├─ nextflow.executor.LocalExecutor.class - [JAR]
├─ nextflow.executor.LocalTaskHandler.class - [JAR]
├─ nextflow.executor.LsfExecutor.class - [JAR]
├─ nextflow.executor.NativeTaskHandler.class - [JAR]
├─ nextflow.executor.NopeExecutor.class - [JAR]
├─ nextflow.executor.NopeTaskHandler.class - [JAR]
├─ nextflow.executor.NqsiiExecutor.class - [JAR]
├─ nextflow.executor.PbsExecutor.class - [JAR]
├─ nextflow.executor.PbsProExecutor.class - [JAR]
├─ nextflow.executor.ScriptFileCopyStrategy.class - [JAR]
├─ nextflow.executor.SgeExecutor.class - [JAR]
├─ nextflow.executor.SimpleFileCopyStrategy.class - [JAR]
├─ nextflow.executor.SlurmExecutor.class - [JAR]
├─ nextflow.executor.SupportedScriptTypes.class - [JAR]
nextflow.processor
├─ nextflow.processor.BatchContext.class - [JAR]
├─ nextflow.processor.BatchHandler.class - [JAR]
├─ nextflow.processor.ConfigList.class - [JAR]
├─ nextflow.processor.ErrorStrategy.class - [JAR]
├─ nextflow.processor.ForwardClosure.class - [JAR]
├─ nextflow.processor.InvokeTaskAdapter.class - [JAR]
├─ nextflow.processor.LazyMap.class - [JAR]
├─ nextflow.processor.LocalPollingMonitor.class - [JAR]
├─ nextflow.processor.ParallelPollingMonitor.class - [JAR]
├─ nextflow.processor.ProcessConfig.class - [JAR]
├─ nextflow.processor.ProcessFactory.class - [JAR]
├─ nextflow.processor.PublishDir.class - [JAR]
├─ nextflow.processor.StateObj.class - [JAR]
├─ nextflow.processor.TaskBean.class - [JAR]
├─ nextflow.processor.TaskConfig.class - [JAR]
├─ nextflow.processor.TaskContext.class - [JAR]
├─ nextflow.processor.TaskDispatcher.class - [JAR]
├─ nextflow.processor.TaskEntry.class - [JAR]
├─ nextflow.processor.TaskFault.class - [JAR]
├─ nextflow.processor.TaskHandler.class - [JAR]
├─ nextflow.processor.TaskId.class - [JAR]
├─ nextflow.processor.TaskMonitor.class - [JAR]
├─ nextflow.processor.TaskPath.class - [JAR]
├─ nextflow.processor.TaskPollingMonitor.class - [JAR]
├─ nextflow.processor.TaskProcessor.class - [JAR]
├─ nextflow.processor.TaskRun.class - [JAR]
├─ nextflow.processor.TaskStatus.class - [JAR]
├─ nextflow.processor.TaskTemplateEngine.class - [JAR]
com.esotericsoftware.minlog
├─ com.esotericsoftware.minlog.Log.class - [JAR]
nextflow.util
├─ nextflow.util.ArrayBag.class - [JAR]
├─ nextflow.util.ArrayTupleSerializer.class - [JAR]
├─ nextflow.util.Barrier.class - [JAR]
├─ nextflow.util.BlankSeparatedList.class - [JAR]
├─ nextflow.util.ClientProxyThrottler.class - [JAR]
├─ nextflow.util.ClusterConfig.class - [JAR]
├─ nextflow.util.ConfigHelper.class - [JAR]
├─ nextflow.util.CustomPoolFactory.class - [JAR]
├─ nextflow.util.CustomThreadFactory.class - [JAR]
├─ nextflow.util.CustomThreadPool.class - [JAR]
├─ nextflow.util.FileSerializer.class - [JAR]
├─ nextflow.util.GStringSerializer.class - [JAR]
├─ nextflow.util.HexIdentity.class - [JAR]
├─ nextflow.util.HistoryFile.class - [JAR]
├─ nextflow.util.InstantiationStrategy.class - [JAR]
├─ nextflow.util.KryoHelper.class - [JAR]
├─ nextflow.util.LoggerHelper.class - [JAR]
├─ nextflow.util.MapEntrySerializer.class - [JAR]
├─ nextflow.util.MatcherInstantiator.class - [JAR]
├─ nextflow.util.NameGenerator.class - [JAR]
├─ nextflow.util.PathSerializer.class - [JAR]
├─ nextflow.util.PathTrie.class - [JAR]
├─ nextflow.util.PatternSerializer.class - [JAR]
├─ nextflow.util.ReadOnlyMap.class - [JAR]
├─ nextflow.util.RemoteSession.class - [JAR]
├─ nextflow.util.ServiceName.class - [JAR]
├─ nextflow.util.SimpleHttpClient.class - [JAR]
├─ nextflow.util.ThrottlingExecutor.class - [JAR]
├─ nextflow.util.Trie.class - [JAR]
├─ nextflow.util.URLSerializer.class - [JAR]
├─ nextflow.util.UUIDSerializer.class - [JAR]
├─ nextflow.util.XPathSerializer.class - [JAR]
nextflow.config
├─ nextflow.config.CascadingConfig.class - [JAR]
├─ nextflow.config.ConfigBase.class - [JAR]
├─ nextflow.config.ConfigBuilder.class - [JAR]
├─ nextflow.config.ConfigClosurePlaceholder.class - [JAR]
├─ nextflow.config.ConfigField.class - [JAR]
├─ nextflow.config.ConfigParser.class - [JAR]
├─ nextflow.config.ConfigTransform.class - [JAR]
├─ nextflow.config.ConfigTransformImpl.class - [JAR]
├─ nextflow.config.Manifest.class - [JAR]
nextflow.scm
├─ nextflow.scm.AssetManager.class - [JAR]
├─ nextflow.scm.BitbucketRepositoryProvider.class - [JAR]
├─ nextflow.scm.GitUrl.class - [JAR]
├─ nextflow.scm.GithubRepositoryProvider.class - [JAR]
├─ nextflow.scm.GitlabRepositoryProvider.class - [JAR]
├─ nextflow.scm.LocalRepositoryProvider.class - [JAR]
├─ nextflow.scm.ProviderConfig.class - [JAR]
├─ nextflow.scm.ProviderPath.class - [JAR]
├─ nextflow.scm.RepositoryProvider.class - [JAR]
nextflow.cli
├─ nextflow.cli.CacheBase.class - [JAR]
├─ nextflow.cli.CliOptions.class - [JAR]
├─ nextflow.cli.CmdBase.class - [JAR]
├─ nextflow.cli.CmdClean.class - [JAR]
├─ nextflow.cli.CmdClone.class - [JAR]
├─ nextflow.cli.CmdCloud.class - [JAR]
├─ nextflow.cli.CmdConfig.class - [JAR]
├─ nextflow.cli.CmdDrop.class - [JAR]
├─ nextflow.cli.CmdFs.class - [JAR]
├─ nextflow.cli.CmdHelp.class - [JAR]
├─ nextflow.cli.CmdHelper.class - [JAR]
├─ nextflow.cli.CmdHistory.class - [JAR]
├─ nextflow.cli.CmdInfo.class - [JAR]
├─ nextflow.cli.CmdKubeRun.class - [JAR]
├─ nextflow.cli.CmdList.class - [JAR]
├─ nextflow.cli.CmdLog.class - [JAR]
├─ nextflow.cli.CmdLs.class - [JAR]
├─ nextflow.cli.CmdNode.class - [JAR]
├─ nextflow.cli.CmdPull.class - [JAR]
├─ nextflow.cli.CmdRun.class - [JAR]
├─ nextflow.cli.CmdSelfUpdate.class - [JAR]
├─ nextflow.cli.CmdView.class - [JAR]
├─ nextflow.cli.DripMain.class - [JAR]
├─ nextflow.cli.HubOptions.class - [JAR]
├─ nextflow.cli.Launcher.class - [JAR]
├─ nextflow.cli.UsageAware.class - [JAR]
de.javakaffee.kryoserializers
├─ de.javakaffee.kryoserializers.UnmodifiableCollectionsSerializer.class - [JAR]
nextflow.k8s.client
├─ nextflow.k8s.client.ClientConfig.class - [JAR]
├─ nextflow.k8s.client.ConfigDiscovery.class - [JAR]
├─ nextflow.k8s.client.K8sClient.class - [JAR]
├─ nextflow.k8s.client.K8sResponseApi.class - [JAR]
├─ nextflow.k8s.client.K8sResponseException.class - [JAR]
├─ nextflow.k8s.client.K8sResponseJson.class - [JAR]
├─ nextflow.k8s.client.PodUnschedulableException.class - [JAR]
├─ nextflow.k8s.client.SSLUtils.class - [JAR]
nextflow.splitter
├─ nextflow.splitter.AbstractBinarySplitter.class - [JAR]
├─ nextflow.splitter.AbstractSplitter.class - [JAR]
├─ nextflow.splitter.AbstractTextSplitter.class - [JAR]
├─ nextflow.splitter.BytesSplitter.class - [JAR]
├─ nextflow.splitter.CacheableCollector.class - [JAR]
├─ nextflow.splitter.CharSequenceCollector.class - [JAR]
├─ nextflow.splitter.CollectorStrategy.class - [JAR]
├─ nextflow.splitter.CsvSplitter.class - [JAR]
├─ nextflow.splitter.EntryCounter.class - [JAR]
├─ nextflow.splitter.FastaSplitter.class - [JAR]
├─ nextflow.splitter.FastqSplitter.class - [JAR]
├─ nextflow.splitter.HeaderCollector.class - [JAR]
├─ nextflow.splitter.ObjectListCollector.class - [JAR]
├─ nextflow.splitter.SplitterFactory.class - [JAR]
├─ nextflow.splitter.SplitterStrategy.class - [JAR]
├─ nextflow.splitter.StringSplitter.class - [JAR]
├─ nextflow.splitter.TextFileCollector.class - [JAR]
├─ nextflow.splitter.TextSplitter.class - [JAR]
nextflow.cloud
├─ nextflow.cloud.CloudConfig.class - [JAR]
├─ nextflow.cloud.CloudConst.class - [JAR]
├─ nextflow.cloud.CloudDriver.class - [JAR]
├─ nextflow.cloud.CloudDriverFactory.class - [JAR]
├─ nextflow.cloud.CloudSpotTerminationException.class - [JAR]
├─ nextflow.cloud.LaunchConfig.class - [JAR]
nextflow.k8s
├─ nextflow.k8s.K8sConfig.class - [JAR]
├─ nextflow.k8s.K8sDriverLauncher.class - [JAR]
├─ nextflow.k8s.K8sExecutor.class - [JAR]
├─ nextflow.k8s.K8sTaskHandler.class - [JAR]
├─ nextflow.k8s.K8sWrapperBuilder.class - [JAR]
nextflow.k8s.model
├─ nextflow.k8s.model.PodEnv.class - [JAR]
├─ nextflow.k8s.model.PodHostMount.class - [JAR]
├─ nextflow.k8s.model.PodMountConfig.class - [JAR]
├─ nextflow.k8s.model.PodMountSecret.class - [JAR]
├─ nextflow.k8s.model.PodOptions.class - [JAR]
├─ nextflow.k8s.model.PodSecurityContext.class - [JAR]
├─ nextflow.k8s.model.PodSpecBuilder.class - [JAR]
├─ nextflow.k8s.model.PodVolumeClaim.class - [JAR]
nextflow.trace
├─ nextflow.trace.AnsiLogObserver.class - [JAR]
├─ nextflow.trace.GraphObserver.class - [JAR]
├─ nextflow.trace.ReportObserver.class - [JAR]
├─ nextflow.trace.ReportSummary.class - [JAR]
├─ nextflow.trace.StatsObserver.class - [JAR]
├─ nextflow.trace.TimelineObserver.class - [JAR]
├─ nextflow.trace.TraceFileObserver.class - [JAR]
├─ nextflow.trace.TraceObserver.class - [JAR]
├─ nextflow.trace.TraceRecord.class - [JAR]
├─ nextflow.trace.WebLogObserver.class - [JAR]
├─ nextflow.trace.WorkflowStats.class - [JAR]
nextflow.exception
├─ nextflow.exception.AbortOperationException.class - [JAR]
├─ nextflow.exception.AbortRunException.class - [JAR]
├─ nextflow.exception.AbortSignalException.class - [JAR]
├─ nextflow.exception.ConfigParseException.class - [JAR]
├─ nextflow.exception.FailedGuardException.class - [JAR]
├─ nextflow.exception.IllegalConfigException.class - [JAR]
├─ nextflow.exception.IllegalDirectiveException.class - [JAR]
├─ nextflow.exception.IllegalFileException.class - [JAR]
├─ nextflow.exception.MissingFileException.class - [JAR]
├─ nextflow.exception.MissingLibraryException.class - [JAR]
├─ nextflow.exception.MissingValueException.class - [JAR]
├─ nextflow.exception.ProcessException.class - [JAR]
├─ nextflow.exception.ProcessFailedException.class - [JAR]
├─ nextflow.exception.ProcessStageException.class - [JAR]
├─ nextflow.exception.ProcessSubmitException.class - [JAR]
├─ nextflow.exception.ProcessTemplateException.class - [JAR]
├─ nextflow.exception.ProcessUnrecoverableException.class - [JAR]
├─ nextflow.exception.ShowOnlyExceptionMessage.class - [JAR]
├─ nextflow.exception.StopSplitIterationException.class - [JAR]
