View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window genomics-dataflow-core-0.1.4.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
com.google.allenday.genomics.core.gcp
├─ com.google.allenday.genomics.core.gcp.GcsService.class - [JAR]
├─ com.google.allenday.genomics.core.gcp.LifeSciencesService.class - [JAR]
├─ com.google.allenday.genomics.core.gcp.ResourceProvider.class - [JAR]
com.google.allenday.genomics.core.worker.cmd
├─ com.google.allenday.genomics.core.worker.cmd.CmdExecutor.class - [JAR]
├─ com.google.allenday.genomics.core.worker.cmd.Commands.class - [JAR]
com.google.allenday.genomics.core.model
├─ com.google.allenday.genomics.core.model.BamWithIndexUris.class - [JAR]
├─ com.google.allenday.genomics.core.model.FileWrapper.class - [JAR]
├─ com.google.allenday.genomics.core.model.SamRecordsChunkMetadataKey.class - [JAR]
├─ com.google.allenday.genomics.core.model.SampleRunMetaData.class - [JAR]
├─ com.google.allenday.genomics.core.model.SraSampleId.class - [JAR]
com.google.allenday.genomics.core.preparing.metadata
├─ com.google.allenday.genomics.core.preparing.metadata.EnrichWithFastqRunInputResourceFn.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.EnrichWithSraInputResourceFn.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.ParseCsvLineFn.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.ParseMetadataAndFilterTr.class - [JAR]
com.google.allenday.genomics.core.export.vcftobq
├─ com.google.allenday.genomics.core.export.vcftobq.PrepareAndExecuteVcfToBqTransform.class - [JAR]
├─ com.google.allenday.genomics.core.export.vcftobq.PrepareDataForExportToBq.class - [JAR]
├─ com.google.allenday.genomics.core.export.vcftobq.VcfToBqFn.class - [JAR]
├─ com.google.allenday.genomics.core.export.vcftobq.VcfToBqService.class - [JAR]
com.google.allenday.genomics.core.pipeline
├─ com.google.allenday.genomics.core.pipeline.DeepVariantOptions.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.GenomicsPipelineOptions.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.GenomicsProcessingParams.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.PipelineSetupUtils.class - [JAR]
com.google.allenday.genomics.core.preparing
├─ com.google.allenday.genomics.core.preparing.RetrieveFastqFromCsvTransform.class - [JAR]
com.google.allenday.genomics.core.preparing.runfile
├─ com.google.allenday.genomics.core.preparing.runfile.FastqInputResource.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.runfile.GcsFastqInputResource.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.runfile.SraInputResource.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.runfile.UrlFastqInputResource.class - [JAR]
com.google.allenday.genomics.core.processing.sam.index
├─ com.google.allenday.genomics.core.processing.sam.index.CreateBamIndexFn.class - [JAR]
com.google.allenday.genomics.core.processing.variantcall
├─ com.google.allenday.genomics.core.processing.variantcall.DeepVariantService.class - [JAR]
├─ com.google.allenday.genomics.core.processing.variantcall.GATKService.class - [JAR]
├─ com.google.allenday.genomics.core.processing.variantcall.VariantCaller.class - [JAR]
├─ com.google.allenday.genomics.core.processing.variantcall.VariantCallingFn.class - [JAR]
├─ com.google.allenday.genomics.core.processing.variantcall.VariantCallingService.class - [JAR]
├─ com.google.allenday.genomics.core.processing.variantcall.VariantCallingTransform.class - [JAR]
com.google.allenday.genomics.core.pipeline.batch
├─ com.google.allenday.genomics.core.pipeline.batch.BatchProcessingModule.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.BatchProcessingPipelineOptions.class - [JAR]
com.google.allenday.genomics.core.pipeline.transform
├─ com.google.allenday.genomics.core.pipeline.transform.BreakFusion.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.transform.ValueIterableToValueListTransform.class - [JAR]
com.google.allenday.genomics.core.processing.sam.merge
├─ com.google.allenday.genomics.core.processing.sam.merge.MergeFn.class - [JAR]
com.google.allenday.genomics.core.preparing.runfile.uriprovider
├─ com.google.allenday.genomics.core.preparing.runfile.uriprovider.BaseUriProvider.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.runfile.uriprovider.DefaultBaseUriProvider.class - [JAR]
com.google.allenday.genomics.core.preparing.sra
├─ com.google.allenday.genomics.core.preparing.sra.SraToolsService.class - [JAR]
com.google.allenday.genomics.core.preparing.custom
├─ com.google.allenday.genomics.core.preparing.custom.FastqInputResourcePreparingTransform.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.custom.PassPreparingTransform.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.custom.SraInputResourcePreparingTransform.class - [JAR]
com.google.allenday.genomics.core.worker
├─ com.google.allenday.genomics.core.worker.WorkerSetupService.class - [JAR]
com.google.allenday.genomics.core.pipeline.batch.partsprocessing
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.CheckExistenceFn.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.PrepareAlignNotProcessedFn.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.PrepareDvNotProcessedFn.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.PrepareIndexNotProcessedFn.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.PrepareMergeNotProcessedFn.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.PrepareSortNotProcessedFn.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.StagingPathsBulder.class - [JAR]
├─ com.google.allenday.genomics.core.pipeline.batch.partsprocessing.VcfToBqBatchTransform.class - [JAR]
com.google.allenday.genomics.core.processing.sam.sort
├─ com.google.allenday.genomics.core.processing.sam.sort.SortFn.class - [JAR]
com.google.allenday.genomics.core.processing.sam
├─ com.google.allenday.genomics.core.processing.sam.SamToolsService.class - [JAR]
com.google.allenday.genomics.core.utils
├─ com.google.allenday.genomics.core.utils.FileUtils.class - [JAR]
├─ com.google.allenday.genomics.core.utils.NameProvider.class - [JAR]
├─ com.google.allenday.genomics.core.utils.StringUtils.class - [JAR]
├─ com.google.allenday.genomics.core.utils.TimeUtils.class - [JAR]
com.google.allenday.genomics.core.preparing.metadata.shema
├─ com.google.allenday.genomics.core.preparing.metadata.shema.CsvSchema.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.shema.FullCsvSchemaImpl.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.shema.SimpleCsvSchema.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.shema.SimpleCsvSchemaImpl.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.metadata.shema.SraCsvSchema.class - [JAR]
com.google.allenday.genomics.core.preparing.fastq
├─ com.google.allenday.genomics.core.preparing.fastq.BuildFastqContentFn.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.fastq.FastqReader.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.fastq.ReadFastqAndSplitIntoChunksFn.class - [JAR]
com.google.allenday.genomics.core.processing.sam.split
├─ com.google.allenday.genomics.core.processing.sam.split.BatchSamParser.class - [JAR]
├─ com.google.allenday.genomics.core.processing.sam.split.SamIntoRegionBatchesFn.class - [JAR]
com.google.allenday.genomics.core.processing.align
├─ com.google.allenday.genomics.core.processing.align.AddReferenceDataSourceFn.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.AlignFn.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.AlignService.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.AlignTransform.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.Aligner.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.BwaAlignService.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.Instrument.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.KAlignService.class - [JAR]
├─ com.google.allenday.genomics.core.processing.align.Minimap2AlignService.class - [JAR]
com.google.allenday.genomics.core.preparing.anomaly
├─ com.google.allenday.genomics.core.preparing.anomaly.DetectMissedFilesAndUnsupportedInstrumentTransform.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.anomaly.RecognizeMissedRunFilesFn.class - [JAR]
├─ com.google.allenday.genomics.core.preparing.anomaly.RecognizeUnsupportedInstrumentFn.class - [JAR]
com.google.allenday.genomics.core.reference
├─ com.google.allenday.genomics.core.reference.ReferenceDatabase.class - [JAR]
├─ com.google.allenday.genomics.core.reference.ReferenceDatabaseSource.class - [JAR]
├─ com.google.allenday.genomics.core.reference.ReferenceProvider.class - [JAR]
com.google.allenday.genomics.core.processing
├─ com.google.allenday.genomics.core.processing.AlignAndSamProcessingTransform.class - [JAR]
com.google.allenday.genomics.core.pipeline.io
├─ com.google.allenday.genomics.core.pipeline.io.TransformIoHandler.class - [JAR]
