View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window micommons-1.0.3.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
com.milaboratory.core.sequencing
├─ com.milaboratory.core.sequencing.SequencingUtils.class - [JAR]
├─ com.milaboratory.core.sequencing.WrongStructureException.class - [JAR]
com.milaboratory.util
├─ com.milaboratory.util.Bit2Array.class - [JAR]
├─ com.milaboratory.util.BitArray.class - [JAR]
├─ com.milaboratory.util.ByteBufferHolder.class - [JAR]
├─ com.milaboratory.util.ByteBufferHolderCache.class - [JAR]
├─ com.milaboratory.util.CanReportProgress.class - [JAR]
├─ com.milaboratory.util.CanReportProgressAndStage.class - [JAR]
├─ com.milaboratory.util.CompressionType.class - [JAR]
├─ com.milaboratory.util.CoordProxy.class - [JAR]
├─ com.milaboratory.util.CountingInputStream.class - [JAR]
├─ com.milaboratory.util.Factory.class - [JAR]
├─ com.milaboratory.util.HashFunctions.class - [JAR]
├─ com.milaboratory.util.IndexRange.class - [JAR]
├─ com.milaboratory.util.InfiniteLongArray.class - [JAR]
├─ com.milaboratory.util.IntArrayList.class - [JAR]
├─ com.milaboratory.util.LongArrayList.class - [JAR]
├─ com.milaboratory.util.Math.class - [JAR]
├─ com.milaboratory.util.NullOutputStream.class - [JAR]
├─ com.milaboratory.util.ProgressReporter.class - [JAR]
├─ com.milaboratory.util.ProgressReporterFactory.class - [JAR]
├─ com.milaboratory.util.SmartProgressReporter.class - [JAR]
├─ com.milaboratory.util.TablePrintStreamAdapter.class - [JAR]
├─ com.milaboratory.util.XMLException.class - [JAR]
com.milaboratory.core.sequencing.io
├─ com.milaboratory.core.sequencing.io.PSequencingDataReader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.SSequencingDataReader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram.class - [JAR]
├─ com.milaboratory.core.sequencing.io.SequencingDataReader.class - [JAR]
com.milaboratory.core.sequence.tree
├─ com.milaboratory.core.sequence.tree.DifferencePenalty.class - [JAR]
├─ com.milaboratory.core.sequence.tree.LinearMinPenalty.class - [JAR]
├─ com.milaboratory.core.sequence.tree.MutationGuide.class - [JAR]
├─ com.milaboratory.core.sequence.tree.NucleotideSQPairSet.class - [JAR]
├─ com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent.class - [JAR]
├─ com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType.class - [JAR]
├─ com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener.class - [JAR]
├─ com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet.class - [JAR]
├─ com.milaboratory.core.sequence.tree.Penalty.class - [JAR]
├─ com.milaboratory.core.sequence.tree.PenaltyUtils.class - [JAR]
├─ com.milaboratory.core.sequence.tree.SequenceTreeMap.class - [JAR]
├─ com.milaboratory.core.sequence.tree.TSSequenceTreeMap.class - [JAR]
com.milaboratory.core.sequencing.io.fastq
├─ com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.PFastqReader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.PFastqWriter.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.PairedFiles.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.QualityFormatChecker.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.ReadInfo.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.ReadInfoImpl.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.ReadInfoProvider.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.SFastqReader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.SFastqWriter.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer.class - [JAR]
com.milaboratory.core.sequence.motif.search
├─ com.milaboratory.core.sequence.motif.search.NucleotideMotifSearch.class - [JAR]
├─ com.milaboratory.core.sequence.motif.search.NucleotideMotifSearchOptions.class - [JAR]
com.milaboratory.core.sequencing.io.sff
├─ com.milaboratory.core.sequencing.io.sff.SFFClipper.class - [JAR]
├─ com.milaboratory.core.sequencing.io.sff.SFFHeader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.sff.SFFRAWRead.class - [JAR]
├─ com.milaboratory.core.sequencing.io.sff.SFFReader.class - [JAR]
com.milaboratory.core.sequence
├─ com.milaboratory.core.sequence.AbstractSequenceBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.Alphabet.class - [JAR]
├─ com.milaboratory.core.sequence.NucleotideSQPair.class - [JAR]
├─ com.milaboratory.core.sequence.Sequence.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceBuilderFactory.class - [JAR]
├─ com.milaboratory.core.sequence.SequencingErrorType.class - [JAR]
com.milaboratory.core.sequence.aminoacid
├─ com.milaboratory.core.sequence.aminoacid.AbstractAASequenceBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.AminoAcidSequence.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.CDRTriplet.class - [JAR]
├─ com.milaboratory.core.sequence.aminoacid.Util.class - [JAR]
com.milaboratory.core.sequencing.read
├─ com.milaboratory.core.sequencing.read.PSequencingRead.class - [JAR]
├─ com.milaboratory.core.sequencing.read.PSequencingReadImpl.class - [JAR]
├─ com.milaboratory.core.sequencing.read.SSequencingRead.class - [JAR]
├─ com.milaboratory.core.sequencing.read.SSequencingReadImpl.class - [JAR]
├─ com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram.class - [JAR]
├─ com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl.class - [JAR]
├─ com.milaboratory.core.sequencing.read.SequencingRead.class - [JAR]
com.milaboratory.core.sequencing.io.fasta
├─ com.milaboratory.core.sequencing.io.fasta.FastaItem.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fasta.FastaItemsReader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fasta.FastaReader.class - [JAR]
├─ com.milaboratory.core.sequencing.io.fasta.FastaWriter.class - [JAR]
com.milaboratory.core.sequence.nucleotide
├─ com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet.class - [JAR]
├─ com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN.class - [JAR]
├─ com.milaboratory.core.sequence.nucleotide.NucleotideSequence.class - [JAR]
├─ com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder.class - [JAR]
com.milaboratory.core.sequence.quality
├─ com.milaboratory.core.sequence.quality.QualityFormat.class - [JAR]
├─ com.milaboratory.core.sequence.quality.SequenceQualityPhred.class - [JAR]
├─ com.milaboratory.core.sequence.quality.SequenceQualityUtils.class - [JAR]
├─ com.milaboratory.core.sequence.quality.WrongQualityStringException.class - [JAR]
com.milaboratory.core.sequence.motif
├─ com.milaboratory.core.sequence.motif.LowQualityIndicator.class - [JAR]
├─ com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideMotif.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideMotifBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideSQPairProvider.class - [JAR]
├─ com.milaboratory.core.sequence.motif.NucleotideWildcards.class - [JAR]
├─ com.milaboratory.core.sequence.motif.SSequencingReadBindings.class - [JAR]
com.milaboratory.core.sequence.util
├─ com.milaboratory.core.sequence.util.NucleotideSequenceAggregator.class - [JAR]
├─ com.milaboratory.core.sequence.util.NucleotideSequenceGenerator.class - [JAR]
├─ com.milaboratory.core.sequence.util.SequenceMismatch.class - [JAR]
├─ com.milaboratory.core.sequence.util.SequenceMismatchCollector.class - [JAR]
├─ com.milaboratory.core.sequence.util.SequencesUtils.class - [JAR]
├─ com.milaboratory.core.sequence.util.Translator.class - [JAR]
