View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window milib-2.3.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
com.milaboratory.util.sorting
├─ com.milaboratory.util.sorting.AbstractHashSortingProperty.class - [JAR]
├─ com.milaboratory.util.sorting.AbstractSortingProperty.class - [JAR]
├─ com.milaboratory.util.sorting.GroupingOutputPort.class - [JAR]
├─ com.milaboratory.util.sorting.HashSorter.class - [JAR]
├─ com.milaboratory.util.sorting.HashUtils.class - [JAR]
├─ com.milaboratory.util.sorting.MappedSortingProperty.class - [JAR]
├─ com.milaboratory.util.sorting.MergeStrategy.class - [JAR]
├─ com.milaboratory.util.sorting.MergingOutputPort.class - [JAR]
├─ com.milaboratory.util.sorting.Property.class - [JAR]
├─ com.milaboratory.util.sorting.Sorter.class - [JAR]
├─ com.milaboratory.util.sorting.SortingProperty.class - [JAR]
├─ com.milaboratory.util.sorting.SortingPropertyRelation.class - [JAR]
├─ com.milaboratory.util.sorting.SortingUtil.class - [JAR]
├─ com.milaboratory.util.sorting.UnorderedMerger.class - [JAR]
├─ com.milaboratory.util.sorting.WithIndex.class - [JAR]
com.milaboratory.util
├─ com.milaboratory.util.AbstractLongProcessReporter.class - [JAR]
├─ com.milaboratory.util.ArrayIterator.class - [JAR]
├─ com.milaboratory.util.ArraysUtils.class - [JAR]
├─ com.milaboratory.util.AtomicEnumHistogram.class - [JAR]
├─ com.milaboratory.util.AtomicHistogram.class - [JAR]
├─ com.milaboratory.util.Bit2Array.class - [JAR]
├─ com.milaboratory.util.BitArray.class - [JAR]
├─ com.milaboratory.util.BottomN.class - [JAR]
├─ com.milaboratory.util.BottomNByte.class - [JAR]
├─ com.milaboratory.util.ByteString.class - [JAR]
├─ com.milaboratory.util.Cache.class - [JAR]
├─ com.milaboratory.util.CachedPipeKt.class - [JAR]
├─ com.milaboratory.util.CanReportProgress.class - [JAR]
├─ com.milaboratory.util.CanReportProgressAndStage.class - [JAR]
├─ com.milaboratory.util.CollectionUtils.class - [JAR]
├─ com.milaboratory.util.CompactIntArrayList.class - [JAR]
├─ com.milaboratory.util.ComparatorsUtilKt.class - [JAR]
├─ com.milaboratory.util.CountLimitingOutputPort.class - [JAR]
├─ com.milaboratory.util.CountLimitingOutputPortKt.class - [JAR]
├─ com.milaboratory.util.CountingInputStream.class - [JAR]
├─ com.milaboratory.util.Factory.class - [JAR]
├─ com.milaboratory.util.FormatUtils.class - [JAR]
├─ com.milaboratory.util.GlobalObjectMappers.class - [JAR]
├─ com.milaboratory.util.GroupByPipeKt.class - [JAR]
├─ com.milaboratory.util.GroupOP.class - [JAR]
├─ com.milaboratory.util.GroupOPF.class - [JAR]
├─ com.milaboratory.util.HashFunctions.class - [JAR]
├─ com.milaboratory.util.IntArrayList.class - [JAR]
├─ com.milaboratory.util.IntCombinations.class - [JAR]
├─ com.milaboratory.util.JsonOverrider.class - [JAR]
├─ com.milaboratory.util.LambdaExecutionException.class - [JAR]
├─ com.milaboratory.util.LambdaLatch.class - [JAR]
├─ com.milaboratory.util.LambdaSemaphore.class - [JAR]
├─ com.milaboratory.util.LightFileDescriptor.class - [JAR]
├─ com.milaboratory.util.LongProcess.class - [JAR]
├─ com.milaboratory.util.LongProcessReporter.class - [JAR]
├─ com.milaboratory.util.NSequenceWithQualityPrintHelper.class - [JAR]
├─ com.milaboratory.util.ObjectSerializer.class - [JAR]
├─ com.milaboratory.util.OutputPortWithExpectedSize.class - [JAR]
├─ com.milaboratory.util.OutputPortWithExpectedSizeKt.class - [JAR]
├─ com.milaboratory.util.OutputPortWithProgress.class - [JAR]
├─ com.milaboratory.util.OutputPortWithProgressKt.class - [JAR]
├─ com.milaboratory.util.ParseUtil.class - [JAR]
├─ com.milaboratory.util.ParserException.class - [JAR]
├─ com.milaboratory.util.ProgressAndStage.class - [JAR]
├─ com.milaboratory.util.ProgressProxy.class - [JAR]
├─ com.milaboratory.util.ProgressUtilKt.class - [JAR]
├─ com.milaboratory.util.RandomUtil.class - [JAR]
├─ com.milaboratory.util.Randomizer.class - [JAR]
├─ com.milaboratory.util.RangeMap.class - [JAR]
├─ com.milaboratory.util.Report.class - [JAR]
├─ com.milaboratory.util.ReportBuilder.class - [JAR]
├─ com.milaboratory.util.ReportHelper.class - [JAR]
├─ com.milaboratory.util.ReportUtil.class - [JAR]
├─ com.milaboratory.util.SingleIterator.class - [JAR]
├─ com.milaboratory.util.SmartProgressReporter.class - [JAR]
├─ com.milaboratory.util.SortedPipeKt.class - [JAR]
├─ com.milaboratory.util.StreamUtil.class - [JAR]
├─ com.milaboratory.util.StringUtil.class - [JAR]
├─ com.milaboratory.util.TempFileDest.class - [JAR]
├─ com.milaboratory.util.TempFileManager.class - [JAR]
├─ com.milaboratory.util.TopN.class - [JAR]
├─ com.milaboratory.util.UtilKt.class - [JAR]
├─ com.milaboratory.util.VersionInfo.class - [JAR]
com.milaboratory.core.merger
├─ com.milaboratory.core.merger.MergerParameters.class - [JAR]
├─ com.milaboratory.core.merger.MismatchOnlyPairedReadMerger.class - [JAR]
├─ com.milaboratory.core.merger.PairedReadMergingResult.class - [JAR]
├─ com.milaboratory.core.merger.QualityMergingAlgorithm.class - [JAR]
com.milaboratory.core.mutations.generator
├─ com.milaboratory.core.mutations.generator.GenericNucleotideMutationModel.class - [JAR]
├─ com.milaboratory.core.mutations.generator.MutationModels.class - [JAR]
├─ com.milaboratory.core.mutations.generator.MutationsGenerator.class - [JAR]
├─ com.milaboratory.core.mutations.generator.NucleotideMutationModel.class - [JAR]
├─ com.milaboratory.core.mutations.generator.SubstitutionModel.class - [JAR]
├─ com.milaboratory.core.mutations.generator.SubstitutionModelBuilder.class - [JAR]
├─ com.milaboratory.core.mutations.generator.SubstitutionModels.class - [JAR]
├─ com.milaboratory.core.mutations.generator.UniformMutationsGenerator.class - [JAR]
com.milaboratory.core.io.sequence.fastq
├─ com.milaboratory.core.io.sequence.fastq.AbstractMultiFastqWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.FastqRecordsReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.MultiFastqWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.PairedFastqReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.PairedFastqWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.QualityFormat.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.RandomAccessFastqReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.RandomAccessPairedFastqReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.SingleFastqIndexer.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.SingleFastqReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.SingleFastqWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.fastq.WrongQualityFormat.class - [JAR]
com.milaboratory.core.alignment.kaligner1
├─ com.milaboratory.core.alignment.kaligner1.AbstractKAlignerParameters.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KAligner.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KAlignerParameters.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KAlignmentHit.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KAlignmentResult.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KAlignmentResultP.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KMapper.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KMappingHit.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner1.KMappingResult.class - [JAR]
com.milaboratory.core.alignment.kaligner2
├─ com.milaboratory.core.alignment.kaligner2.KAligner2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KAligner2Statistics.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KAlignerParameters2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KAlignmentHit2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KAlignmentResult2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KMapper2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KMappingHit2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.KMappingResult2.class - [JAR]
├─ com.milaboratory.core.alignment.kaligner2.OffsetPacksAccumulator.class - [JAR]
com.milaboratory.core.io.binary
├─ com.milaboratory.core.io.binary.AlignmentSerializer.class - [JAR]
├─ com.milaboratory.core.io.binary.RangeSerializer.class - [JAR]
com.milaboratory.core.alignment
├─ com.milaboratory.core.alignment.AbstractAlignmentScoring.class - [JAR]
├─ com.milaboratory.core.alignment.AffineGapAlignmentScoring.class - [JAR]
├─ com.milaboratory.core.alignment.Aligner.class - [JAR]
├─ com.milaboratory.core.alignment.AlignerCustom.class - [JAR]
├─ com.milaboratory.core.alignment.Alignment.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentCache.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentElement.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentElementType.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentHelper.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentIterator.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentIteratorForward.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentIteratorReverse.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentScoring.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentTrimmer.class - [JAR]
├─ com.milaboratory.core.alignment.AlignmentUtils.class - [JAR]
├─ com.milaboratory.core.alignment.BLASTMatrix.class - [JAR]
├─ com.milaboratory.core.alignment.BandedAffineAligner.class - [JAR]
├─ com.milaboratory.core.alignment.BandedAligner.class - [JAR]
├─ com.milaboratory.core.alignment.BandedAlignerParameters.class - [JAR]
├─ com.milaboratory.core.alignment.BandedLinearAligner.class - [JAR]
├─ com.milaboratory.core.alignment.BandedMatrix.class - [JAR]
├─ com.milaboratory.core.alignment.BandedSemiLocalResult.class - [JAR]
├─ com.milaboratory.core.alignment.CachedIntArray.class - [JAR]
├─ com.milaboratory.core.alignment.IO.class - [JAR]
├─ com.milaboratory.core.alignment.LinearGapAlignmentScoring.class - [JAR]
├─ com.milaboratory.core.alignment.ScoringMatrixIO.class - [JAR]
├─ com.milaboratory.core.alignment.ScoringUtils.class - [JAR]
├─ com.milaboratory.core.alignment.SubstitutionMatrix.class - [JAR]
├─ com.milaboratory.core.alignment.UniversalSemiGlobalAlignmentResult.class - [JAR]
com.milaboratory.core.io.sequence
├─ com.milaboratory.core.io.sequence.AbstractMultiReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.AbstractSequenceReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.ConcatenatingSingleReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.IO.class - [JAR]
├─ com.milaboratory.core.io.sequence.IllegalFileFormatException.class - [JAR]
├─ com.milaboratory.core.io.sequence.MultiRead.class - [JAR]
├─ com.milaboratory.core.io.sequence.MultiReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.MultiSequenceWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.PairedRead.class - [JAR]
├─ com.milaboratory.core.io.sequence.PairedReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.PairedSequenceWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.SequenceRead.class - [JAR]
├─ com.milaboratory.core.io.sequence.SequenceReadUtil.class - [JAR]
├─ com.milaboratory.core.io.sequence.SequenceReadWrapper.class - [JAR]
├─ com.milaboratory.core.io.sequence.SequenceReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.SequenceWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.SingleRead.class - [JAR]
├─ com.milaboratory.core.io.sequence.SingleReadImpl.class - [JAR]
├─ com.milaboratory.core.io.sequence.SingleReadLazy.class - [JAR]
├─ com.milaboratory.core.io.sequence.SingleReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.SingleSequenceWriter.class - [JAR]
com.milaboratory.app
├─ com.milaboratory.app.ApplicationException.class - [JAR]
├─ com.milaboratory.app.InputFileType.class - [JAR]
├─ com.milaboratory.app.InputFileTypeKt.class - [JAR]
├─ com.milaboratory.app.ValidationException.class - [JAR]
├─ com.milaboratory.app.logger.class - [JAR]
com.milaboratory.cli
├─ com.milaboratory.cli.Action.class - [JAR]
├─ com.milaboratory.cli.ActionHelpProvider.class - [JAR]
├─ com.milaboratory.cli.ActionHelper.class - [JAR]
├─ com.milaboratory.cli.ActionParameters.class - [JAR]
├─ com.milaboratory.cli.ActionParametersParser.class - [JAR]
├─ com.milaboratory.cli.ActionParametersWithOutput.class - [JAR]
├─ com.milaboratory.cli.AllowNoArguments.class - [JAR]
├─ com.milaboratory.cli.AppVersionInfo.class - [JAR]
├─ com.milaboratory.cli.DeprecatedParameter.class - [JAR]
├─ com.milaboratory.cli.HiddenAction.class - [JAR]
├─ com.milaboratory.cli.JCommanderBasedMain.class - [JAR]
├─ com.milaboratory.cli.ProcessException.class - [JAR]
com.milaboratory.primitivio
├─ com.milaboratory.primitivio.CustomSerializerImpl.class - [JAR]
├─ com.milaboratory.primitivio.DefaultSerializersProvider.class - [JAR]
├─ com.milaboratory.primitivio.DefaultSerializersProviderImpl.class - [JAR]
├─ com.milaboratory.primitivio.HasPrimitivIOState.class - [JAR]
├─ com.milaboratory.primitivio.IOExtensionsKt.class - [JAR]
├─ com.milaboratory.primitivio.JSONSerializer.class - [JAR]
├─ com.milaboratory.primitivio.ObjectMapperProvider.class - [JAR]
├─ com.milaboratory.primitivio.PReader.class - [JAR]
├─ com.milaboratory.primitivio.PWriter.class - [JAR]
├─ com.milaboratory.primitivio.PipeDataInputReader.class - [JAR]
├─ com.milaboratory.primitivio.PipeReader.class - [JAR]
├─ com.milaboratory.primitivio.PipeWriter.class - [JAR]
├─ com.milaboratory.primitivio.PrimitivI.class - [JAR]
├─ com.milaboratory.primitivio.PrimitivIO.class - [JAR]
├─ com.milaboratory.primitivio.PrimitivIOStateBuilder.class - [JAR]
├─ com.milaboratory.primitivio.PrimitivIState.class - [JAR]
├─ com.milaboratory.primitivio.PrimitivO.class - [JAR]
├─ com.milaboratory.primitivio.PrimitivOState.class - [JAR]
├─ com.milaboratory.primitivio.Serializer.class - [JAR]
├─ com.milaboratory.primitivio.SerializersManager.class - [JAR]
├─ com.milaboratory.primitivio.TypeSerializationHelper.class - [JAR]
├─ com.milaboratory.primitivio.Util.class - [JAR]
com.milaboratory.core.io.sequence.fasta
├─ com.milaboratory.core.io.sequence.fasta.FastaReader.class - [JAR]
├─ com.milaboratory.core.io.sequence.fasta.FastaRecord.class - [JAR]
├─ com.milaboratory.core.io.sequence.fasta.FastaSequenceReaderWrapper.class - [JAR]
├─ com.milaboratory.core.io.sequence.fasta.FastaSequenceWriterWrapper.class - [JAR]
├─ com.milaboratory.core.io.sequence.fasta.FastaWriter.class - [JAR]
├─ com.milaboratory.core.io.sequence.fasta.RandomAccessFastaIndex.class - [JAR]
├─ com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReader.class - [JAR]
com.milaboratory.core.sequence.quality
├─ com.milaboratory.core.sequence.quality.AverageQualityAggregator.class - [JAR]
├─ com.milaboratory.core.sequence.quality.FunctionWithIndex.class - [JAR]
├─ com.milaboratory.core.sequence.quality.MaximalQualityAggregator.class - [JAR]
├─ com.milaboratory.core.sequence.quality.MiniMaxQualityAggregator.class - [JAR]
├─ com.milaboratory.core.sequence.quality.MinimalQualityAggregator.class - [JAR]
├─ com.milaboratory.core.sequence.quality.QualityAggregationType.class - [JAR]
├─ com.milaboratory.core.sequence.quality.QualityAggregator.class - [JAR]
├─ com.milaboratory.core.sequence.quality.QualityTrimmer.class - [JAR]
├─ com.milaboratory.core.sequence.quality.QualityTrimmerParameters.class - [JAR]
├─ com.milaboratory.core.sequence.quality.ReadTrimmerListener.class - [JAR]
├─ com.milaboratory.core.sequence.quality.ReadTrimmerProcessor.class - [JAR]
├─ com.milaboratory.core.sequence.quality.SumQualityAggregator.class - [JAR]
com.milaboratory.core.alignment.benchmark
├─ com.milaboratory.core.alignment.benchmark.Benchmark.class - [JAR]
├─ com.milaboratory.core.alignment.benchmark.BenchmarkInput.class - [JAR]
├─ com.milaboratory.core.alignment.benchmark.BenchmarkResults.class - [JAR]
├─ com.milaboratory.core.alignment.benchmark.Challenge.class - [JAR]
├─ com.milaboratory.core.alignment.benchmark.ChallengeParameters.class - [JAR]
├─ com.milaboratory.core.alignment.benchmark.ChallengeProvider.class - [JAR]
├─ com.milaboratory.core.alignment.benchmark.KAlignerQuery.class - [JAR]
com.milaboratory.primitivio.annotations
├─ com.milaboratory.primitivio.annotations.CustomSerializer.class - [JAR]
├─ com.milaboratory.primitivio.annotations.Serializable.class - [JAR]
com.milaboratory.core.clustering
├─ com.milaboratory.core.clustering.Cluster.class - [JAR]
├─ com.milaboratory.core.clustering.Clustering.class - [JAR]
├─ com.milaboratory.core.clustering.ClusteringStrategy.class - [JAR]
├─ com.milaboratory.core.clustering.SequenceExtractor.class - [JAR]
com.milaboratory.core.mutations
├─ com.milaboratory.core.mutations.CoverageCounter.class - [JAR]
├─ com.milaboratory.core.mutations.IO.class - [JAR]
├─ com.milaboratory.core.mutations.Mutation.class - [JAR]
├─ com.milaboratory.core.mutations.MutationConsensusBuilder.class - [JAR]
├─ com.milaboratory.core.mutations.MutationType.class - [JAR]
├─ com.milaboratory.core.mutations.Mutations.class - [JAR]
├─ com.milaboratory.core.mutations.MutationsBuilder.class - [JAR]
├─ com.milaboratory.core.mutations.MutationsCounter.class - [JAR]
├─ com.milaboratory.core.mutations.MutationsEnumerator.class - [JAR]
├─ com.milaboratory.core.mutations.MutationsUtil.class - [JAR]
├─ com.milaboratory.core.mutations.SequenceWeighter.class - [JAR]
com.milaboratory.core.alignment.batch
├─ com.milaboratory.core.alignment.batch.AbstractBatchAligner.class - [JAR]
├─ com.milaboratory.core.alignment.batch.AlignmentHit.class - [JAR]
├─ com.milaboratory.core.alignment.batch.AlignmentHitImpl.class - [JAR]
├─ com.milaboratory.core.alignment.batch.AlignmentResult.class - [JAR]
├─ com.milaboratory.core.alignment.batch.AlignmentResultImpl.class - [JAR]
├─ com.milaboratory.core.alignment.batch.BatchAligner.class - [JAR]
├─ com.milaboratory.core.alignment.batch.BatchAlignerWithBase.class - [JAR]
├─ com.milaboratory.core.alignment.batch.BatchAlignerWithBaseParameters.class - [JAR]
├─ com.milaboratory.core.alignment.batch.BatchAlignerWithBaseWithFilter.class - [JAR]
├─ com.milaboratory.core.alignment.batch.BatchAlignmentUtil.class - [JAR]
├─ com.milaboratory.core.alignment.batch.HasSequence.class - [JAR]
├─ com.milaboratory.core.alignment.batch.LeftmostBatchAlignerAdapter.class - [JAR]
├─ com.milaboratory.core.alignment.batch.PipedAlignmentResult.class - [JAR]
├─ com.milaboratory.core.alignment.batch.PipedAlignmentResultImpl.class - [JAR]
├─ com.milaboratory.core.alignment.batch.PipedBatchAligner.class - [JAR]
├─ com.milaboratory.core.alignment.batch.PipedBatchAlignerWithBase.class - [JAR]
├─ com.milaboratory.core.alignment.batch.SequenceExtractor.class - [JAR]
├─ com.milaboratory.core.alignment.batch.SimpleBatchAligner.class - [JAR]
├─ com.milaboratory.core.alignment.batch.SimpleBatchAlignerParameters.class - [JAR]
├─ com.milaboratory.core.alignment.batch.WithBase.class - [JAR]
com.milaboratory.core.tree
├─ com.milaboratory.core.tree.BranchingEnumerator.class - [JAR]
├─ com.milaboratory.core.tree.MutationGuide.class - [JAR]
├─ com.milaboratory.core.tree.NeighborhoodIterator.class - [JAR]
├─ com.milaboratory.core.tree.PenaltyUtils.class - [JAR]
├─ com.milaboratory.core.tree.SequenceTreeMap.class - [JAR]
├─ com.milaboratory.core.tree.TreeSearchParameters.class - [JAR]
com.milaboratory.core.alignment.blast
├─ com.milaboratory.core.alignment.blast.AABlastAligner.class - [JAR]
├─ com.milaboratory.core.alignment.blast.AABlastAlignerExt.class - [JAR]
├─ com.milaboratory.core.alignment.blast.AABlastHit.class - [JAR]
├─ com.milaboratory.core.alignment.blast.AABlastHitExt.class - [JAR]
├─ com.milaboratory.core.alignment.blast.Blast.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastAligner.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastAlignerAbstract.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastAlignerExt.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastAlignerExtAbstract.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastAlignerParameters.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastDB.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastDBBuilder.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastHit.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastHitExt.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastStrand.class - [JAR]
├─ com.milaboratory.core.alignment.blast.BlastTask.class - [JAR]
├─ com.milaboratory.core.alignment.blast.NBlastAligner.class - [JAR]
├─ com.milaboratory.core.alignment.blast.NBlastAlignerExt.class - [JAR]
├─ com.milaboratory.core.alignment.blast.NBlastHit.class - [JAR]
├─ com.milaboratory.core.alignment.blast.NBlastHitExt.class - [JAR]
com.milaboratory.util.io
├─ com.milaboratory.util.io.AsynchronousFileChannelAdapter.class - [JAR]
├─ com.milaboratory.util.io.ByteArrayDataOutput.class - [JAR]
├─ com.milaboratory.util.io.ByteBufferDataInputAdapter.class - [JAR]
├─ com.milaboratory.util.io.HasMutablePosition.class - [JAR]
├─ com.milaboratory.util.io.HasPosition.class - [JAR]
├─ com.milaboratory.util.io.IOUtil.class - [JAR]
com.milaboratory.core.sequence
├─ com.milaboratory.core.sequence.AbstractArrayAlphabet.class - [JAR]
├─ com.milaboratory.core.sequence.AbstractArraySequence.class - [JAR]
├─ com.milaboratory.core.sequence.AbstractSeq.class - [JAR]
├─ com.milaboratory.core.sequence.Alphabet.class - [JAR]
├─ com.milaboratory.core.sequence.Alphabets.class - [JAR]
├─ com.milaboratory.core.sequence.AminoAcidAlphabet.class - [JAR]
├─ com.milaboratory.core.sequence.AminoAcidSequence.class - [JAR]
├─ com.milaboratory.core.sequence.ArraySeqBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.ArraySequenceBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.GeneticCode.class - [JAR]
├─ com.milaboratory.core.sequence.IO.class - [JAR]
├─ com.milaboratory.core.sequence.MultiNSequenceWithQuality.class - [JAR]
├─ com.milaboratory.core.sequence.MultiNSequenceWithQualityImpl.class - [JAR]
├─ com.milaboratory.core.sequence.NSQTuple.class - [JAR]
├─ com.milaboratory.core.sequence.NSeq.class - [JAR]
├─ com.milaboratory.core.sequence.NSequenceWithQuality.class - [JAR]
├─ com.milaboratory.core.sequence.NSequenceWithQualityBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.NucleotideAlphabet.class - [JAR]
├─ com.milaboratory.core.sequence.NucleotideSequence.class - [JAR]
├─ com.milaboratory.core.sequence.Seq.class - [JAR]
├─ com.milaboratory.core.sequence.SeqBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.Sequence.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceProperties.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceQuality.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceQualityBuilder.class - [JAR]
├─ com.milaboratory.core.sequence.SequenceWithQuality.class - [JAR]
├─ com.milaboratory.core.sequence.SequencesUtils.class - [JAR]
├─ com.milaboratory.core.sequence.ShortSequenceSet.class - [JAR]
├─ com.milaboratory.core.sequence.TranslationParameters.class - [JAR]
├─ com.milaboratory.core.sequence.UnsafeFactory.class - [JAR]
├─ com.milaboratory.core.sequence.Wildcard.class - [JAR]
com.milaboratory.core.motif
├─ com.milaboratory.core.motif.BitScoreCalculator.class - [JAR]
├─ com.milaboratory.core.motif.BitapData.class - [JAR]
├─ com.milaboratory.core.motif.BitapMatcher.class - [JAR]
├─ com.milaboratory.core.motif.BitapMatcherFilter.class - [JAR]
├─ com.milaboratory.core.motif.BitapMatcherImpl.class - [JAR]
├─ com.milaboratory.core.motif.BitapMatcherWithScore.class - [JAR]
├─ com.milaboratory.core.motif.BitapPattern.class - [JAR]
├─ com.milaboratory.core.motif.BitapStateIterator.class - [JAR]
├─ com.milaboratory.core.motif.LongArrayBitHelper.class - [JAR]
├─ com.milaboratory.core.motif.Motif.class - [JAR]
├─ com.milaboratory.core.motif.MotifBuilder.class - [JAR]
├─ com.milaboratory.core.motif.MotifUtils.class - [JAR]
├─ com.milaboratory.core.motif.MotifWithExactMask.class - [JAR]
com.milaboratory.core.io
├─ com.milaboratory.core.io.CompressionType.class - [JAR]
com.milaboratory.primitivio.blocks
├─ com.milaboratory.primitivio.blocks.PrimitivIBlocks.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIBlocksStats.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIHeaderAction.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIHeaderActions.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIHybrid.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIOBlockHeader.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIOBlocksAbstract.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIOBlocksStatsAbstract.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivIOBlocksUtil.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivOBlocks.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivOBlocksStats.class - [JAR]
├─ com.milaboratory.primitivio.blocks.PrimitivOHybrid.class - [JAR]
com.milaboratory.core
├─ com.milaboratory.core.PairedEndReadsLayout.class - [JAR]
├─ com.milaboratory.core.Range.class - [JAR]
├─ com.milaboratory.core.Target.class - [JAR]
com.milaboratory.core.io.util
├─ com.milaboratory.core.io.util.AbstractRandomAccessReader.class - [JAR]
├─ com.milaboratory.core.io.util.FileIndex.class - [JAR]
├─ com.milaboratory.core.io.util.FileIndexBuilder.class - [JAR]
├─ com.milaboratory.core.io.util.IOUtil.class - [JAR]
com.milaboratory.core.sequence.provider
├─ com.milaboratory.core.sequence.provider.CachedSequenceProvider.class - [JAR]
├─ com.milaboratory.core.sequence.provider.SequenceProvider.class - [JAR]
├─ com.milaboratory.core.sequence.provider.SequenceProviderFactory.class - [JAR]
├─ com.milaboratory.core.sequence.provider.SequenceProviderIndexOutOfBoundsException.class - [JAR]
├─ com.milaboratory.core.sequence.provider.SequenceProviderUtils.class - [JAR]
