jar

io.github.bigbio : pepgenome

Maven & Gradle

Aug 18, 2021
3 stars

Pepgenome: Peptide to Genome Coordinates · PepGenome uses transcript translations and reference gene annotations to identify the genomic loci of peptides and post-translational modifications. Multiple occurrences of peptides in the input data resulting in the same genomic loci will be collapsed as a single occurrence in the output.

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Version Vulnerabilities Size Updated
1.1.x
1.1

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org.bigbio.pgatk.pepgenome.io.custom

├─ org.bigbio.pgatk.pepgenome.io.custom.PeptideAtlasPeptideParser.class - [JAR]

org.bigbio.pgatk.pepgenome.common.maps

├─ org.bigbio.pgatk.pepgenome.common.maps.MappedPeptides.class - [JAR]

org.bigbio.pgatk.pepgenome.common.comparators

├─ org.bigbio.pgatk.pepgenome.common.comparators.MapentryPCompare.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.comparators.PeptideentryPcompare.class - [JAR]

org.bigbio.pgatk.pepgenome.common.constants

├─ org.bigbio.pgatk.pepgenome.common.constants.GenomeMapper.class - [JAR]

org.bigbio.pgatk.pepgenome

├─ org.bigbio.pgatk.pepgenome.CoordinateWrapper.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.PepGenomeTool.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.PossibleKeyGenerator.class - [JAR]

org.bigbio.pgatk.pepgenome.kmer

├─ org.bigbio.pgatk.pepgenome.kmer.IKmerEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.kmer.IKmerMap.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.kmer.KmerEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.kmer.PossibleKeyGenerator.class - [JAR]

org.bigbio.pgatk.pepgenome.common

├─ org.bigbio.pgatk.pepgenome.common.Assembly.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.ByIntValue.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Chromosome.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Coordinates.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.CustomMultimap.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.EnumStringMapper.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.ExistingPeptides.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.FastaEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Frame.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.GeneEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.GenomeCoordinates.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.MapEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Offset.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.PTMEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.PeptideCoordinates.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.PeptideEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.PeptidecoordsPCompare.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.PeptidecoordsPairPcompare.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.PositionMismatchT.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.ProteinEntry.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Strand.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.TranscriptsT.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Tuple.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.common.Utils.class - [JAR]

org.bigbio.pgatk.pepgenome.io

├─ org.bigbio.pgatk.pepgenome.io.FastaParser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.GFF3Parser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.GTFParser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.GenomeAnnotationParser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.GenomeFastaParser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.MzTabInputPeptideFileParser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.PeptideAvroFileParser.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.PeptideInputReader.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.io.TabInputPeptideFileParser.class - [JAR]

org.bigbio.pgatk.pepgenome.kmer.inmemory

├─ org.bigbio.pgatk.pepgenome.kmer.inmemory.KmerSortedMap.class - [JAR]

├─ org.bigbio.pgatk.pepgenome.kmer.inmemory.KmerTreeMap.class - [JAR]

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