View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window jebl-3.1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
jebl.evolution.alignments
├─ jebl.evolution.alignments.Alignment.class - [JAR]
├─ jebl.evolution.alignments.BasicAlignment.class - [JAR]
├─ jebl.evolution.alignments.BootstrappedAlignment.class - [JAR]
├─ jebl.evolution.alignments.ConsensusSequence.class - [JAR]
├─ jebl.evolution.alignments.JackknifedAlignment.class - [JAR]
├─ jebl.evolution.alignments.Pattern.class - [JAR]
├─ jebl.evolution.alignments.Patterns.class - [JAR]
├─ jebl.evolution.alignments.ResampledAlignment.class - [JAR]
jebl.math
├─ jebl.math.Binomial.class - [JAR]
├─ jebl.math.GammaFunction.class - [JAR]
├─ jebl.math.MachineAccuracy.class - [JAR]
├─ jebl.math.MatrixCalc.class - [JAR]
├─ jebl.math.MatrixCalcException.class - [JAR]
├─ jebl.math.MersenneTwisterFast.class - [JAR]
├─ jebl.math.MinimiserMonitor.class - [JAR]
├─ jebl.math.MultivariateFunction.class - [JAR]
├─ jebl.math.MultivariateMinimum.class - [JAR]
├─ jebl.math.NumericalDerivative.class - [JAR]
├─ jebl.math.OrderEnumerator.class - [JAR]
├─ jebl.math.OrthogonalHints.class - [JAR]
├─ jebl.math.OrthogonalLineFunction.class - [JAR]
├─ jebl.math.OrthogonalSearch.class - [JAR]
├─ jebl.math.Random.class - [JAR]
├─ jebl.math.UnivariateFunction.class - [JAR]
├─ jebl.math.UnivariateMinimum.class - [JAR]
jebl.evolution.substmodel
├─ jebl.evolution.substmodel.AbstractRateMatrix.class - [JAR]
├─ jebl.evolution.substmodel.AminoAcidModel.class - [JAR]
├─ jebl.evolution.substmodel.MatrixExponential.class - [JAR]
├─ jebl.evolution.substmodel.RateMatrix.class - [JAR]
├─ jebl.evolution.substmodel.WAG.class - [JAR]
jebl.evolution.parsimony
├─ jebl.evolution.parsimony.FitchParsimony.class - [JAR]
├─ jebl.evolution.parsimony.ParsimonyCriterion.class - [JAR]
jebl.evolution.taxa
├─ jebl.evolution.taxa.MissingTaxonException.class - [JAR]
├─ jebl.evolution.taxa.Taxon.class - [JAR]
├─ jebl.evolution.taxa.TaxonomicLevel.class - [JAR]
jebl.evolution.distances
├─ jebl.evolution.distances.BasicDistanceMatrix.class - [JAR]
├─ jebl.evolution.distances.CannotBuildDistanceMatrixException.class - [JAR]
├─ jebl.evolution.distances.DistanceMatrix.class - [JAR]
├─ jebl.evolution.distances.F84DistanceMatrix.class - [JAR]
├─ jebl.evolution.distances.HKYDistanceMatrix.class - [JAR]
├─ jebl.evolution.distances.JukesCantorDistanceMatrix.class - [JAR]
├─ jebl.evolution.distances.ModelBasedDistanceMatrix.class - [JAR]
├─ jebl.evolution.distances.TamuraNeiDistanceMatrix.class - [JAR]
jebl.evolution.graphs
├─ jebl.evolution.graphs.Edge.class - [JAR]
├─ jebl.evolution.graphs.Graph.class - [JAR]
├─ jebl.evolution.graphs.Node.class - [JAR]
├─ jebl.evolution.graphs.Utils.class - [JAR]
jebl.evolution.io
├─ jebl.evolution.io.AlignmentExporter.class - [JAR]
├─ jebl.evolution.io.AlignmentImporter.class - [JAR]
├─ jebl.evolution.io.ByteBuilder.class - [JAR]
├─ jebl.evolution.io.DistanceMatrixImporter.class - [JAR]
├─ jebl.evolution.io.FastaExporter.class - [JAR]
├─ jebl.evolution.io.FastaImporter.class - [JAR]
├─ jebl.evolution.io.IllegalCharacterPolicy.class - [JAR]
├─ jebl.evolution.io.ImmediateSequenceImporter.class - [JAR]
├─ jebl.evolution.io.ImportException.class - [JAR]
├─ jebl.evolution.io.ImportHelper.class - [JAR]
├─ jebl.evolution.io.MEGAExporter.class - [JAR]
├─ jebl.evolution.io.NewickExporter.class - [JAR]
├─ jebl.evolution.io.NewickImporter.class - [JAR]
├─ jebl.evolution.io.NexusExporter.class - [JAR]
├─ jebl.evolution.io.NexusImporter.class - [JAR]
├─ jebl.evolution.io.PHYLIPExporter.class - [JAR]
├─ jebl.evolution.io.PhylipSequentialImporter.class - [JAR]
├─ jebl.evolution.io.SequenceExporter.class - [JAR]
├─ jebl.evolution.io.SequenceImporter.class - [JAR]
├─ jebl.evolution.io.TabDelimitedImporter.class - [JAR]
├─ jebl.evolution.io.TreeExporter.class - [JAR]
├─ jebl.evolution.io.TreeImporter.class - [JAR]
jebl.util
├─ jebl.util.Attributable.class - [JAR]
├─ jebl.util.AttributableHelper.class - [JAR]
├─ jebl.util.BasicProgressListener.class - [JAR]
├─ jebl.util.Cancelable.class - [JAR]
├─ jebl.util.CompositeProgressListener.class - [JAR]
├─ jebl.util.FixedBitSet.class - [JAR]
├─ jebl.util.HashPair.class - [JAR]
├─ jebl.util.MaybeBoolean.class - [JAR]
├─ jebl.util.NumberFormatter.class - [JAR]
├─ jebl.util.ProgressListener.class - [JAR]
├─ jebl.util.SimpleListener.class - [JAR]
├─ jebl.util.Utils.class - [JAR]
jebl.evolution.coalescent
├─ jebl.evolution.coalescent.CataclysmicDemographic.class - [JAR]
├─ jebl.evolution.coalescent.Coalescent.class - [JAR]
├─ jebl.evolution.coalescent.ConstExponential.class - [JAR]
├─ jebl.evolution.coalescent.ConstLogistic.class - [JAR]
├─ jebl.evolution.coalescent.ConstantPopulation.class - [JAR]
├─ jebl.evolution.coalescent.DemographicFunction.class - [JAR]
├─ jebl.evolution.coalescent.EmpiricalDemographicFunction.class - [JAR]
├─ jebl.evolution.coalescent.Expansion.class - [JAR]
├─ jebl.evolution.coalescent.ExponentialGrowth.class - [JAR]
├─ jebl.evolution.coalescent.ExponentialLogistic.class - [JAR]
├─ jebl.evolution.coalescent.IntervalList.class - [JAR]
├─ jebl.evolution.coalescent.Intervals.class - [JAR]
├─ jebl.evolution.coalescent.LogisticGrowth.class - [JAR]
jebl.evolution.characters
├─ jebl.evolution.characters.Character.class - [JAR]
├─ jebl.evolution.characters.CharacterType.class - [JAR]
├─ jebl.evolution.characters.ContinuousCharacter.class - [JAR]
├─ jebl.evolution.characters.DiscreteCharacter.class - [JAR]
jebl.evolution.aligners
├─ jebl.evolution.aligners.Aligner.class - [JAR]
jebl.evolution.sequences
├─ jebl.evolution.sequences.AminoAcidState.class - [JAR]
├─ jebl.evolution.sequences.AminoAcids.class - [JAR]
├─ jebl.evolution.sequences.BasicSequence.class - [JAR]
├─ jebl.evolution.sequences.CanonicalSequence.class - [JAR]
├─ jebl.evolution.sequences.CodonSequence.class - [JAR]
├─ jebl.evolution.sequences.CodonState.class - [JAR]
├─ jebl.evolution.sequences.Codons.class - [JAR]
├─ jebl.evolution.sequences.FilteredSequence.class - [JAR]
├─ jebl.evolution.sequences.GaplessSequence.class - [JAR]
├─ jebl.evolution.sequences.GeneticCode.class - [JAR]
├─ jebl.evolution.sequences.NucleotideState.class - [JAR]
├─ jebl.evolution.sequences.Nucleotides.class - [JAR]
├─ jebl.evolution.sequences.Sequence.class - [JAR]
├─ jebl.evolution.sequences.SequenceStateException.class - [JAR]
├─ jebl.evolution.sequences.SequenceTester.class - [JAR]
├─ jebl.evolution.sequences.SequenceType.class - [JAR]
├─ jebl.evolution.sequences.Sequences.class - [JAR]
├─ jebl.evolution.sequences.State.class - [JAR]
├─ jebl.evolution.sequences.StateClassification.class - [JAR]
├─ jebl.evolution.sequences.TranslatedSequence.class - [JAR]
├─ jebl.evolution.sequences.Utils.class - [JAR]
jebl.evolution.align.scores
├─ jebl.evolution.align.scores.AminoAcidScores.class - [JAR]
├─ jebl.evolution.align.scores.Blosum45.class - [JAR]
├─ jebl.evolution.align.scores.Blosum50.class - [JAR]
├─ jebl.evolution.align.scores.Blosum55.class - [JAR]
├─ jebl.evolution.align.scores.Blosum60.class - [JAR]
├─ jebl.evolution.align.scores.Blosum62.class - [JAR]
├─ jebl.evolution.align.scores.Blosum65.class - [JAR]
├─ jebl.evolution.align.scores.Blosum70.class - [JAR]
├─ jebl.evolution.align.scores.Blosum75.class - [JAR]
├─ jebl.evolution.align.scores.Blosum80.class - [JAR]
├─ jebl.evolution.align.scores.Blosum85.class - [JAR]
├─ jebl.evolution.align.scores.Blosum90.class - [JAR]
├─ jebl.evolution.align.scores.Hamming.class - [JAR]
├─ jebl.evolution.align.scores.JukesCantor.class - [JAR]
├─ jebl.evolution.align.scores.NucleotideScores.class - [JAR]
├─ jebl.evolution.align.scores.Pam100.class - [JAR]
├─ jebl.evolution.align.scores.Pam110.class - [JAR]
├─ jebl.evolution.align.scores.Pam120.class - [JAR]
├─ jebl.evolution.align.scores.Pam130.class - [JAR]
├─ jebl.evolution.align.scores.Pam140.class - [JAR]
├─ jebl.evolution.align.scores.Pam150.class - [JAR]
├─ jebl.evolution.align.scores.Pam160.class - [JAR]
├─ jebl.evolution.align.scores.Pam170.class - [JAR]
├─ jebl.evolution.align.scores.Pam180.class - [JAR]
├─ jebl.evolution.align.scores.Pam190.class - [JAR]
├─ jebl.evolution.align.scores.Pam200.class - [JAR]
├─ jebl.evolution.align.scores.Pam210.class - [JAR]
├─ jebl.evolution.align.scores.Pam220.class - [JAR]
├─ jebl.evolution.align.scores.Pam230.class - [JAR]
├─ jebl.evolution.align.scores.Pam240.class - [JAR]
├─ jebl.evolution.align.scores.Pam250.class - [JAR]
├─ jebl.evolution.align.scores.ScoreMatrix.class - [JAR]
├─ jebl.evolution.align.scores.Scores.class - [JAR]
├─ jebl.evolution.align.scores.ScoresFactory.class - [JAR]
├─ jebl.evolution.align.scores.SubstScoreMatrix.class - [JAR]
jebl.evolution.treesimulation
├─ jebl.evolution.treesimulation.CoalescentIntervalGenerator.class - [JAR]
├─ jebl.evolution.treesimulation.IntervalGenerator.class - [JAR]
├─ jebl.evolution.treesimulation.TreeSimulator.class - [JAR]
jebl.evolution.align
├─ jebl.evolution.align.Align.class - [JAR]
├─ jebl.evolution.align.AlignAffine.class - [JAR]
├─ jebl.evolution.align.AlignCommand.class - [JAR]
├─ jebl.evolution.align.AlignLinearSpace.class - [JAR]
├─ jebl.evolution.align.AlignLinearSpaceAffine.class - [JAR]
├─ jebl.evolution.align.AlignRepeat.class - [JAR]
├─ jebl.evolution.align.AlignRepeatAffine.class - [JAR]
├─ jebl.evolution.align.AlignSimple.class - [JAR]
├─ jebl.evolution.align.AlignmentResult.class - [JAR]
├─ jebl.evolution.align.AlignmentTreeBuilderFactory.class - [JAR]
├─ jebl.evolution.align.BartonSternberg.class - [JAR]
├─ jebl.evolution.align.CompoundAlignmentProgressListener.class - [JAR]
├─ jebl.evolution.align.LocalAlignment.class - [JAR]
├─ jebl.evolution.align.MaximalSegmentPair.class - [JAR]
├─ jebl.evolution.align.MultipleAligner.class - [JAR]
├─ jebl.evolution.align.NeedlemanWunsch.class - [JAR]
├─ jebl.evolution.align.NeedlemanWunschAffine.class - [JAR]
├─ jebl.evolution.align.NeedlemanWunschLinearSpace.class - [JAR]
├─ jebl.evolution.align.NeedlemanWunschLinearSpaceAffine.class - [JAR]
├─ jebl.evolution.align.NonOverlapMultipleLocalAffine.class - [JAR]
├─ jebl.evolution.align.OldNeedlemanWunschAffine.class - [JAR]
├─ jebl.evolution.align.Output.class - [JAR]
├─ jebl.evolution.align.OverlapAlign.class - [JAR]
├─ jebl.evolution.align.PairwiseAligner.class - [JAR]
├─ jebl.evolution.align.Profile.class - [JAR]
├─ jebl.evolution.align.ProfileCharacter.class - [JAR]
├─ jebl.evolution.align.SequenceAlignmentsDistanceMatrix.class - [JAR]
├─ jebl.evolution.align.SequenceShuffler.class - [JAR]
├─ jebl.evolution.align.SmithWaterman.class - [JAR]
├─ jebl.evolution.align.SmithWatermanLinearSpace.class - [JAR]
├─ jebl.evolution.align.SmithWatermanLinearSpaceAffine.class - [JAR]
├─ jebl.evolution.align.SystemOut.class - [JAR]
├─ jebl.evolution.align.Traceback.class - [JAR]
├─ jebl.evolution.align.TracebackAffine.class - [JAR]
├─ jebl.evolution.align.TracebackPlotter.class - [JAR]
├─ jebl.evolution.align.TracebackSimple.class - [JAR]
jebl.evolution.trees
├─ jebl.evolution.trees.AbstractRootedTree.class - [JAR]
├─ jebl.evolution.trees.AttributableImp.class - [JAR]
├─ jebl.evolution.trees.AttributedCladeSystem.class - [JAR]
├─ jebl.evolution.trees.BaseEdge.class - [JAR]
├─ jebl.evolution.trees.BaseNode.class - [JAR]
├─ jebl.evolution.trees.CalculateSplitRates.class - [JAR]
├─ jebl.evolution.trees.CladeSystem.class - [JAR]
├─ jebl.evolution.trees.ClusteringTreeBuilder.class - [JAR]
├─ jebl.evolution.trees.CompactRootedTree.class - [JAR]
├─ jebl.evolution.trees.ConsensusTreeBuilder.class - [JAR]
├─ jebl.evolution.trees.FilteredRootedTree.class - [JAR]
├─ jebl.evolution.trees.GreedyRootedConsensusTreeBuilder.class - [JAR]
├─ jebl.evolution.trees.GreedyUnrootedConsensusTreeBuilder.class - [JAR]
├─ jebl.evolution.trees.MRCACConsensusTreeBuilder.class - [JAR]
├─ jebl.evolution.trees.MostProbableTopology.class - [JAR]
├─ jebl.evolution.trees.MutableRootedTree.class - [JAR]
├─ jebl.evolution.trees.NeighborJoiningTreeBuilder.class - [JAR]
├─ jebl.evolution.trees.ReRootedTree.class - [JAR]
├─ jebl.evolution.trees.RootedFromUnrooted.class - [JAR]
├─ jebl.evolution.trees.RootedSubtree.class - [JAR]
├─ jebl.evolution.trees.RootedTree.class - [JAR]
├─ jebl.evolution.trees.RootedTreeUtils.class - [JAR]
├─ jebl.evolution.trees.SimpleRootedTree.class - [JAR]
├─ jebl.evolution.trees.SimpleTree.class - [JAR]
├─ jebl.evolution.trees.SortedRootedTree.class - [JAR]
├─ jebl.evolution.trees.SplitSystem.class - [JAR]
├─ jebl.evolution.trees.SplitUtils.class - [JAR]
├─ jebl.evolution.trees.TransformedRootedTree.class - [JAR]
├─ jebl.evolution.trees.Tree.class - [JAR]
├─ jebl.evolution.trees.TreeBiPartitionInfo.class - [JAR]
├─ jebl.evolution.trees.TreeBuilder.class - [JAR]
├─ jebl.evolution.trees.TreeBuilderFactory.class - [JAR]
├─ jebl.evolution.trees.TreeChangeEvent.class - [JAR]
├─ jebl.evolution.trees.TreeChangeListener.class - [JAR]
├─ jebl.evolution.trees.TreeSelectionChangeEvent.class - [JAR]
├─ jebl.evolution.trees.UPGMATreeBuilder.class - [JAR]
├─ jebl.evolution.trees.Utils.class - [JAR]
jebl.evolution.treemetrics
├─ jebl.evolution.treemetrics.BilleraMetric.class - [JAR]
├─ jebl.evolution.treemetrics.CladeHeightMetric.class - [JAR]
├─ jebl.evolution.treemetrics.RobinsonsFouldMetric.class - [JAR]
├─ jebl.evolution.treemetrics.RootedTreeMetric.class - [JAR]
