jar

io.projectglow : glow-spark2_2.12

Maven & Gradle

Dec 02, 2021
270 stars

glow-spark2 · An open-source toolkit for large-scale genomic analysis

Table Of Contents

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1.1.x
1.0.x
0.6.x

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io.projectglow.transformers.pipe

├─ io.projectglow.transformers.pipe.CSVInputFormatter.class - [JAR]

├─ io.projectglow.transformers.pipe.CSVInputFormatterFactory.class - [JAR]

├─ io.projectglow.transformers.pipe.CSVOutputFormatter.class - [JAR]

├─ io.projectglow.transformers.pipe.CSVOutputFormatterFactory.class - [JAR]

├─ io.projectglow.transformers.pipe.CleanupPipeTransformer.class - [JAR]

├─ io.projectglow.transformers.pipe.InputFormatter.class - [JAR]

├─ io.projectglow.transformers.pipe.InputFormatterFactory.class - [JAR]

├─ io.projectglow.transformers.pipe.OutputFormatter.class - [JAR]

├─ io.projectglow.transformers.pipe.OutputFormatterFactory.class - [JAR]

├─ io.projectglow.transformers.pipe.PipeIterator.class - [JAR]

├─ io.projectglow.transformers.pipe.PipeTransformer.class - [JAR]

├─ io.projectglow.transformers.pipe.Piper.class - [JAR]

├─ io.projectglow.transformers.pipe.ProcessHelper.class - [JAR]

├─ io.projectglow.transformers.pipe.UTF8TextInputFormatter.class - [JAR]

├─ io.projectglow.transformers.pipe.UTF8TextInputFormatterFactory.class - [JAR]

├─ io.projectglow.transformers.pipe.UTF8TextOutputFormatter.class - [JAR]

├─ io.projectglow.transformers.pipe.UTF8TextOutputFormatterFactory.class - [JAR]

io.projectglow.sql

├─ io.projectglow.sql.BigFileDatasource.class - [JAR]

├─ io.projectglow.sql.BigFileUploader.class - [JAR]

├─ io.projectglow.sql.Functions.class - [JAR]

├─ io.projectglow.sql.GlowConf.class - [JAR]

├─ io.projectglow.sql.GlowSQLExtensions.class - [JAR]

├─ io.projectglow.sql.SingleFileRelation.class - [JAR]

├─ io.projectglow.sql.SingleFileWriter.class - [JAR]

├─ io.projectglow.sql.SqlExtensionProvider.class - [JAR]

io.projectglow.transformers.blockvariantsandsamples

├─ io.projectglow.transformers.blockvariantsandsamples.BlockVariantsAndSamplesTransformer.class - [JAR]

├─ io.projectglow.transformers.blockvariantsandsamples.VariantSampleBlockMaker.class - [JAR]

htsjdk.variant.vcf

├─ htsjdk.variant.vcf.VCFEncoderUtils.class - [JAR]

io.projectglow.transformers.splitmultiallelics

├─ io.projectglow.transformers.splitmultiallelics.SplitMultiallelicsTransformer.class - [JAR]

├─ io.projectglow.transformers.splitmultiallelics.VariantSplitter.class - [JAR]

htsjdk.variant.variantcontext.writer

├─ htsjdk.variant.variantcontext.writer.VCFHeaderWriter.class - [JAR]

org.apache.spark.sql.execution.datasources.csv

├─ org.apache.spark.sql.execution.datasources.csv.CSVDataSourceUtils.class - [JAR]

├─ org.apache.spark.sql.execution.datasources.csv.MinimalFailureSafeParser.class - [JAR]

├─ org.apache.spark.sql.execution.datasources.csv.SGUnivocityGenerator.class - [JAR]

├─ org.apache.spark.sql.execution.datasources.csv.UnivocityParserUtils.class - [JAR]

io.projectglow

├─ io.projectglow.DataFrameTransformer.class - [JAR]

├─ io.projectglow.Glow.class - [JAR]

├─ io.projectglow.GlowBase.class - [JAR]

├─ io.projectglow.SparkShim.class - [JAR]

├─ io.projectglow.SparkShimBase.class - [JAR]

├─ io.projectglow.functions.class - [JAR]

io.projectglow.gff

├─ io.projectglow.gff.GffDataSource.class - [JAR]

├─ io.projectglow.gff.GffResourceRelation.class - [JAR]

io.projectglow.transformers.normalizevariants

├─ io.projectglow.transformers.normalizevariants.NormalizeVariantsTransformer.class - [JAR]

├─ io.projectglow.transformers.normalizevariants.VariantNormalizer.class - [JAR]

io.projectglow.sql.optimizer

├─ io.projectglow.sql.optimizer.ReplaceExpressionsRule.class - [JAR]

├─ io.projectglow.sql.optimizer.ResolveAggregateFunctionsRule.class - [JAR]

├─ io.projectglow.sql.optimizer.ResolveExpandStructRule.class - [JAR]

├─ io.projectglow.sql.optimizer.ResolveGenotypeFields.class - [JAR]

org.apache.spark.sql.catalyst.expressions

├─ org.apache.spark.sql.catalyst.expressions.QuinaryExpression.class - [JAR]

├─ org.apache.spark.sql.catalyst.expressions.SenaryExpression.class - [JAR]

io.projectglow.common

├─ io.projectglow.common.BgenGenotype.class - [JAR]

├─ io.projectglow.common.BgenOptions.class - [JAR]

├─ io.projectglow.common.BgenRow.class - [JAR]

├─ io.projectglow.common.CommonOptions.class - [JAR]

├─ io.projectglow.common.ConverterUtils.class - [JAR]

├─ io.projectglow.common.FeatureSchemas.class - [JAR]

├─ io.projectglow.common.GenotypeFields.class - [JAR]

├─ io.projectglow.common.GlowLogging.class - [JAR]

├─ io.projectglow.common.HailUtils.class - [JAR]

├─ io.projectglow.common.HasStringency.class - [JAR]

├─ io.projectglow.common.Named.class - [JAR]

├─ io.projectglow.common.PlinkGenotype.class - [JAR]

├─ io.projectglow.common.PlinkOptions.class - [JAR]

├─ io.projectglow.common.PlinkRow.class - [JAR]

├─ io.projectglow.common.PythonUtils.class - [JAR]

├─ io.projectglow.common.SimpleInterval.class - [JAR]

├─ io.projectglow.common.VCFOptions.class - [JAR]

├─ io.projectglow.common.VCFRow.class - [JAR]

├─ io.projectglow.common.VariantSchemas.class - [JAR]

├─ io.projectglow.common.WithUtils.class - [JAR]

io.projectglow.plink

├─ io.projectglow.plink.BedFileIterator.class - [JAR]

├─ io.projectglow.plink.PlinkFileFormat.class - [JAR]

├─ io.projectglow.plink.PlinkRowToInternalRowConverter.class - [JAR]

io.projectglow.transformers

├─ io.projectglow.transformers.LiftOverVariantsTransformer.class - [JAR]

io.projectglow.sql.dsl

├─ io.projectglow.sql.dsl.package.class - [JAR]

org.apache.spark.sql

├─ org.apache.spark.sql.SQLUtils.class - [JAR]

io.projectglow.transformers.util

├─ io.projectglow.transformers.util.SnakeCaseMap.class - [JAR]

├─ io.projectglow.transformers.util.StringUtils.class - [JAR]

io.projectglow.bgen

├─ io.projectglow.bgen.BgenConverterUtils.class - [JAR]

├─ io.projectglow.bgen.BgenFileFormat.class - [JAR]

├─ io.projectglow.bgen.BgenFileIterator.class - [JAR]

├─ io.projectglow.bgen.BgenGenotypeReader.class - [JAR]

├─ io.projectglow.bgen.BgenHeaderReader.class - [JAR]

├─ io.projectglow.bgen.BgenHeaderWriter.class - [JAR]

├─ io.projectglow.bgen.BgenMetadata.class - [JAR]

├─ io.projectglow.bgen.BgenRecordWriter.class - [JAR]

├─ io.projectglow.bgen.BgenRowToInternalRowConverter.class - [JAR]

├─ io.projectglow.bgen.BgenSchemaInferrer.class - [JAR]

├─ io.projectglow.bgen.BigBgenDatasource.class - [JAR]

├─ io.projectglow.bgen.BigBgenOptions.class - [JAR]

├─ io.projectglow.bgen.ComDatabricksBgenFileFormat.class - [JAR]

├─ io.projectglow.bgen.ComDatabricksBigBgenDatasource.class - [JAR]

├─ io.projectglow.bgen.FractionalPartIndex.class - [JAR]

├─ io.projectglow.bgen.GenotypeCharacteristics.class - [JAR]

├─ io.projectglow.bgen.InternalRowToBgenRowConverter.class - [JAR]

├─ io.projectglow.bgen.ProbabilityBlockSize.class - [JAR]

├─ io.projectglow.bgen.SnpBlockCompression.class - [JAR]

├─ io.projectglow.bgen.SortByDescendingFractionalPart.class - [JAR]

├─ io.projectglow.bgen.UncompressedBgenGenotypeReader.class - [JAR]

├─ io.projectglow.bgen.ZlibBgenGenotypeReader.class - [JAR]

├─ io.projectglow.bgen.ZstdBgenGenotypeReader.class - [JAR]

io.projectglow.sql.expressions

├─ io.projectglow.sql.expressions.AddStructFields.class - [JAR]

├─ io.projectglow.sql.expressions.AggregateByIndex.class - [JAR]

├─ io.projectglow.sql.expressions.ArrayStatsSummary.class - [JAR]

├─ io.projectglow.sql.expressions.ArrayToDenseVector.class - [JAR]

├─ io.projectglow.sql.expressions.ArrayToSparseVector.class - [JAR]

├─ io.projectglow.sql.expressions.AssertTrueOrError.class - [JAR]

├─ io.projectglow.sql.expressions.CallStats.class - [JAR]

├─ io.projectglow.sql.expressions.CallStatsStruct.class - [JAR]

├─ io.projectglow.sql.expressions.CallSummaryStats.class - [JAR]

├─ io.projectglow.sql.expressions.CovariateQRContext.class - [JAR]

├─ io.projectglow.sql.expressions.DpSummaryStats.class - [JAR]

├─ io.projectglow.sql.expressions.ExpandStruct.class - [JAR]

├─ io.projectglow.sql.expressions.ExplodeMatrix.class - [JAR]

├─ io.projectglow.sql.expressions.ExpressionHelper.class - [JAR]

├─ io.projectglow.sql.expressions.FirthFit.class - [JAR]

├─ io.projectglow.sql.expressions.FirthFitState.class - [JAR]

├─ io.projectglow.sql.expressions.FirthNewtonArgs.class - [JAR]

├─ io.projectglow.sql.expressions.FirthTest.class - [JAR]

├─ io.projectglow.sql.expressions.GenotypeStates.class - [JAR]

├─ io.projectglow.sql.expressions.GqSummaryStats.class - [JAR]

├─ io.projectglow.sql.expressions.HardCalls.class - [JAR]

├─ io.projectglow.sql.expressions.HardyWeinberg.class - [JAR]

├─ io.projectglow.sql.expressions.HardyWeinbergStruct.class - [JAR]

├─ io.projectglow.sql.expressions.LRTFitState.class - [JAR]

├─ io.projectglow.sql.expressions.LiftOverCoordinatesExpr.class - [JAR]

├─ io.projectglow.sql.expressions.LikelihoodRatioTest.class - [JAR]

├─ io.projectglow.sql.expressions.LinearRegressionExpr.class - [JAR]

├─ io.projectglow.sql.expressions.LinearRegressionGwas.class - [JAR]

├─ io.projectglow.sql.expressions.LogisticRegressionExpr.class - [JAR]

├─ io.projectglow.sql.expressions.LogisticRegressionGwas.class - [JAR]

├─ io.projectglow.sql.expressions.LogisticRegressionState.class - [JAR]

├─ io.projectglow.sql.expressions.LogitTest.class - [JAR]

├─ io.projectglow.sql.expressions.LogitTestResults.class - [JAR]

├─ io.projectglow.sql.expressions.MeanSubstitute.class - [JAR]

├─ io.projectglow.sql.expressions.MomentAggState.class - [JAR]

├─ io.projectglow.sql.expressions.NewtonIterationsState.class - [JAR]

├─ io.projectglow.sql.expressions.NewtonResult.class - [JAR]

├─ io.projectglow.sql.expressions.NormalizeVariantExpr.class - [JAR]

├─ io.projectglow.sql.expressions.PerSampleSummaryStatistics.class - [JAR]

├─ io.projectglow.sql.expressions.RegressionStats.class - [JAR]

├─ io.projectglow.sql.expressions.SampleCallStats.class - [JAR]

├─ io.projectglow.sql.expressions.SampleDpSummaryStatistics.class - [JAR]

├─ io.projectglow.sql.expressions.SampleGqSummaryStatistics.class - [JAR]

├─ io.projectglow.sql.expressions.SampleSummaryStatsState.class - [JAR]

├─ io.projectglow.sql.expressions.SubsetStruct.class - [JAR]

├─ io.projectglow.sql.expressions.UnwrappedAggregateByIndex.class - [JAR]

├─ io.projectglow.sql.expressions.UnwrappedAggregateFunction.class - [JAR]

├─ io.projectglow.sql.expressions.VariantQcExprs.class - [JAR]

├─ io.projectglow.sql.expressions.VariantType.class - [JAR]

├─ io.projectglow.sql.expressions.VariantUtilExprs.class - [JAR]

├─ io.projectglow.sql.expressions.VectorToArray.class - [JAR]

├─ io.projectglow.sql.expressions.WrappedAggregateByIndex.class - [JAR]

io.projectglow.vcf

├─ io.projectglow.vcf.AbstractVCFIterator.class - [JAR]

├─ io.projectglow.vcf.AnnotationUtils.class - [JAR]

├─ io.projectglow.vcf.BigVCFDatasource.class - [JAR]

├─ io.projectglow.vcf.ComDatabricksBigVCFDatasource.class - [JAR]

├─ io.projectglow.vcf.ComDatabricksVCFFileFormat.class - [JAR]

├─ io.projectglow.vcf.FieldTypes.class - [JAR]

├─ io.projectglow.vcf.FilterContig.class - [JAR]

├─ io.projectglow.vcf.FilterInterval.class - [JAR]

├─ io.projectglow.vcf.InferSampleIds.class - [JAR]

├─ io.projectglow.vcf.InternalRowToVariantContextConverter.class - [JAR]

├─ io.projectglow.vcf.LineCtx.class - [JAR]

├─ io.projectglow.vcf.LineIteratorImpl.class - [JAR]

├─ io.projectglow.vcf.ParsedFilterResult.class - [JAR]

├─ io.projectglow.vcf.SampleIdInfo.class - [JAR]

├─ io.projectglow.vcf.SampleIds.class - [JAR]

├─ io.projectglow.vcf.SchemaDelegate.class - [JAR]

├─ io.projectglow.vcf.TabixIndexHelper.class - [JAR]

├─ io.projectglow.vcf.VCFFileFormat.class - [JAR]

├─ io.projectglow.vcf.VCFFileWriter.class - [JAR]

├─ io.projectglow.vcf.VCFHeaderUtils.class - [JAR]

├─ io.projectglow.vcf.VCFInputFormatter.class - [JAR]

├─ io.projectglow.vcf.VCFInputFormatterFactory.class - [JAR]

├─ io.projectglow.vcf.VCFIterator.class - [JAR]

├─ io.projectglow.vcf.VCFLineToInternalRowConverter.class - [JAR]

├─ io.projectglow.vcf.VCFMetadataLoader.class - [JAR]

├─ io.projectglow.vcf.VCFOptionParser.class - [JAR]

├─ io.projectglow.vcf.VCFOutputFormatter.class - [JAR]

├─ io.projectglow.vcf.VCFOutputFormatterFactory.class - [JAR]

├─ io.projectglow.vcf.VCFOutputWriterFactory.class - [JAR]

├─ io.projectglow.vcf.VCFRowHeaderLines.class - [JAR]

├─ io.projectglow.vcf.VCFSchemaInferrer.class - [JAR]

├─ io.projectglow.vcf.VCFStreamWriter.class - [JAR]

├─ io.projectglow.vcf.VCFWriterUtils.class - [JAR]

├─ io.projectglow.vcf.VariantContextToInternalRowConverter.class - [JAR]

org.seqdoop.hadoop_bam.util

├─ org.seqdoop.hadoop_bam.util.GlowBGZFOutputStream.class - [JAR]

io.projectglow.sql.util

├─ io.projectglow.sql.util.BGZFCodec.class - [JAR]

├─ io.projectglow.sql.util.ComDatabricksDataSource.class - [JAR]

├─ io.projectglow.sql.util.ExpectsGenotypeFields.class - [JAR]

├─ io.projectglow.sql.util.GenotypeInfo.class - [JAR]

├─ io.projectglow.sql.util.HadoopLineIterator.class - [JAR]

├─ io.projectglow.sql.util.LeveneHaldane.class - [JAR]

├─ io.projectglow.sql.util.Rewrite.class - [JAR]

├─ io.projectglow.sql.util.RewriteAfterResolution.class - [JAR]

├─ io.projectglow.sql.util.RowConverter.class - [JAR]

├─ io.projectglow.sql.util.SerializableConfiguration.class - [JAR]

io.projectglow.common.logging

├─ io.projectglow.common.logging.HlsEventRecorder.class - [JAR]

├─ io.projectglow.common.logging.HlsMetricDefinitions.class - [JAR]

├─ io.projectglow.common.logging.HlsTagDefinitions.class - [JAR]

├─ io.projectglow.common.logging.HlsTagValues.class - [JAR]

├─ io.projectglow.common.logging.HlsUsageLogging.class - [JAR]

├─ io.projectglow.common.logging.MetricDefinition.class - [JAR]

├─ io.projectglow.common.logging.PythonHlsEventRecorder.class - [JAR]

├─ io.projectglow.common.logging.TagDefinition.class - [JAR]

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