jar

io.repseq : repseqio

Maven & Gradle

Jan 26, 2023
14 stars

RepseqIO · Command line helper to manipulate RepSeq.IO formatted V/D/J/C reference data.

Table Of Contents

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1.7.x
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1.5.x
1.4.x
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1.3
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View Java Class Source Code in JAR file

  1. Download JD-GUI to open JAR file and explore Java source code file (.class .java)
  2. Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window repseqio-1.7.0.jar file.
    Once you open a JAR file, all the java classes in the JAR file will be displayed.

io.repseq.util

├─ io.repseq.util.Doc.class - [JAR]

├─ io.repseq.util.IMGTPadding.class - [JAR]

├─ io.repseq.util.RepseqIOVersionInfo.class - [JAR]

├─ io.repseq.util.SequenceBase.class - [JAR]

├─ io.repseq.util.StringWithMapping.class - [JAR]

io.repseq.dto

├─ io.repseq.dto.GeneTag.class - [JAR]

├─ io.repseq.dto.IO.class - [JAR]

├─ io.repseq.dto.KnownSequenceFragmentData.class - [JAR]

├─ io.repseq.dto.KnownVDJCGeneMetaFields.class - [JAR]

├─ io.repseq.dto.KnownVDJCLibraryMetaFields.class - [JAR]

├─ io.repseq.dto.MetaUtils.class - [JAR]

├─ io.repseq.dto.VDJCDataUtils.class - [JAR]

├─ io.repseq.dto.VDJCGeneData.class - [JAR]

├─ io.repseq.dto.VDJCLibraryData.class - [JAR]

io.repseq.gen

├─ io.repseq.gen.ConcatenatedLazySequence.class - [JAR]

├─ io.repseq.gen.DTrimming.class - [JAR]

├─ io.repseq.gen.GClone.class - [JAR]

├─ io.repseq.gen.GGene.class - [JAR]

├─ io.repseq.gen.GRepertoire.class - [JAR]

├─ io.repseq.gen.GRepertoireReader.class - [JAR]

├─ io.repseq.gen.GRepertoireWriter.class - [JAR]

├─ io.repseq.gen.VDJCGenes.class - [JAR]

├─ io.repseq.gen.VDJCUsageDistribution.class - [JAR]

├─ io.repseq.gen.VDJCUsageDistributionInstance.class - [JAR]

├─ io.repseq.gen.VDJTrimming.class - [JAR]

io.repseq.cli

├─ io.repseq.cli.CLIUtils.class - [JAR]

├─ io.repseq.cli.CheckAction.class - [JAR]

├─ io.repseq.cli.CompileAction.class - [JAR]

├─ io.repseq.cli.DebugAction.class - [JAR]

├─ io.repseq.cli.ExportCloneSequencesAction.class - [JAR]

├─ io.repseq.cli.FastaAction.class - [JAR]

├─ io.repseq.cli.FilterAction.class - [JAR]

├─ io.repseq.cli.FormatAction.class - [JAR]

├─ io.repseq.cli.FromFastaAction.class - [JAR]

├─ io.repseq.cli.FromFastaActionAbstract.class - [JAR]

├─ io.repseq.cli.FromFastaParametersAbstract.class - [JAR]

├─ io.repseq.cli.FromPaddedFastaAction.class - [JAR]

├─ io.repseq.cli.GenerateClonesAction.class - [JAR]

├─ io.repseq.cli.InferAnchorPointsAction.class - [JAR]

├─ io.repseq.cli.ListAction.class - [JAR]

├─ io.repseq.cli.Main.class - [JAR]

├─ io.repseq.cli.MergeAction.class - [JAR]

├─ io.repseq.cli.ModifyLibraryAction.class - [JAR]

├─ io.repseq.cli.NormalizeCloneAbundancesAction.class - [JAR]

├─ io.repseq.cli.StatAction.class - [JAR]

├─ io.repseq.cli.TsvAction.class - [JAR]

io.repseq.maven

├─ io.repseq.maven.CompileLibraryGradleStage.class - [JAR]

io.repseq.gen.dist

├─ io.repseq.gen.dist.BasicGCloneModel.class - [JAR]

├─ io.repseq.gen.dist.BasicGGeneModel.class - [JAR]

├─ io.repseq.gen.dist.CategoricalIndependentIntModel.class - [JAR]

├─ io.repseq.gen.dist.CommonCategoricalDGeneTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.CommonCategoricalGeneTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.CommonNormalDTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.CommonNormalGeneTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.DJCDependentVDJCGenesModel.class - [JAR]

├─ io.repseq.gen.dist.DJDependentVDJCGenesModel.class - [JAR]

├─ io.repseq.gen.dist.DTrimmingGenerator.class - [JAR]

├─ io.repseq.gen.dist.DTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.DoubleTensor.class - [JAR]

├─ io.repseq.gen.dist.FixedInsertModel.class - [JAR]

├─ io.repseq.gen.dist.FixedRealModel.class - [JAR]

├─ io.repseq.gen.dist.GCloneGenerator.class - [JAR]

├─ io.repseq.gen.dist.GCloneModel.class - [JAR]

├─ io.repseq.gen.dist.GGeneGenerator.class - [JAR]

├─ io.repseq.gen.dist.GGeneModel.class - [JAR]

├─ io.repseq.gen.dist.GModels.class - [JAR]

├─ io.repseq.gen.dist.GeneTrimmingGenerator.class - [JAR]

├─ io.repseq.gen.dist.GeneTrimmingGeneratorEnumerated.class - [JAR]

├─ io.repseq.gen.dist.GeneTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.IndependentIntGenerator.class - [JAR]

├─ io.repseq.gen.dist.IndependentIntModel.class - [JAR]

├─ io.repseq.gen.dist.IndependentRealGenerator.class - [JAR]

├─ io.repseq.gen.dist.IndependentRealModel.class - [JAR]

├─ io.repseq.gen.dist.IndependentVDJCGenesModel.class - [JAR]

├─ io.repseq.gen.dist.IndependentVDJTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.InsertGenerator.class - [JAR]

├─ io.repseq.gen.dist.InsertModel.class - [JAR]

├─ io.repseq.gen.dist.MarkovInsertModel.class - [JAR]

├─ io.repseq.gen.dist.Model.class - [JAR]

├─ io.repseq.gen.dist.NormalDistributionParameters.class - [JAR]

├─ io.repseq.gen.dist.ParetoModel.class - [JAR]

├─ io.repseq.gen.dist.SeparateCategoricalDGeneTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.SeparateCategoricalGeneTrimmingModel.class - [JAR]

├─ io.repseq.gen.dist.VDJCGenesGenerator.class - [JAR]

├─ io.repseq.gen.dist.VDJCGenesModel.class - [JAR]

├─ io.repseq.gen.dist.VDJTrimmingGenerator.class - [JAR]

├─ io.repseq.gen.dist.VDJTrimmingModel.class - [JAR]

io.repseq.core

├─ io.repseq.core.AbstractReferencePoints.class - [JAR]

├─ io.repseq.core.AbstractReferencePointsBuilder.class - [JAR]

├─ io.repseq.core.BaseSequence.class - [JAR]

├─ io.repseq.core.BasicReferencePoint.class - [JAR]

├─ io.repseq.core.Chains.class - [JAR]

├─ io.repseq.core.ExtendedReferencePoints.class - [JAR]

├─ io.repseq.core.ExtendedReferencePointsBuilder.class - [JAR]

├─ io.repseq.core.GeneFeature.class - [JAR]

├─ io.repseq.core.GeneFeatureSerializer.class - [JAR]

├─ io.repseq.core.GeneFeatureSplitResult.class - [JAR]

├─ io.repseq.core.GeneLabels.class - [JAR]

├─ io.repseq.core.GeneNotFoundException.class - [JAR]

├─ io.repseq.core.GeneType.class - [JAR]

├─ io.repseq.core.IO.class - [JAR]

├─ io.repseq.core.PartitionedSequence.class - [JAR]

├─ io.repseq.core.PartitionedSequenceCached.class - [JAR]

├─ io.repseq.core.RangeTranslationParameters.class - [JAR]

├─ io.repseq.core.ReferencePoint.class - [JAR]

├─ io.repseq.core.ReferencePoints.class - [JAR]

├─ io.repseq.core.ReferencePointsBuilder.class - [JAR]

├─ io.repseq.core.ReferenceUtil.class - [JAR]

├─ io.repseq.core.RelativePointSide.class - [JAR]

├─ io.repseq.core.SequencePartitioning.class - [JAR]

├─ io.repseq.core.SequenceProviderAndReferencePoints.class - [JAR]

├─ io.repseq.core.VDJCGene.class - [JAR]

├─ io.repseq.core.VDJCGeneId.class - [JAR]

├─ io.repseq.core.VDJCLibrary.class - [JAR]

├─ io.repseq.core.VDJCLibraryId.class - [JAR]

├─ io.repseq.core.VDJCLibraryRegistry.class - [JAR]

io.repseq.seqbase

├─ io.repseq.seqbase.AbstractRAFastaResolver.class - [JAR]

├─ io.repseq.seqbase.AnySequenceResolver.class - [JAR]

├─ io.repseq.seqbase.HTTPFastaSequenceResolver.class - [JAR]

├─ io.repseq.seqbase.HTTPRedirectSequenceResolver.class - [JAR]

├─ io.repseq.seqbase.HTTPResolversContext.class - [JAR]

├─ io.repseq.seqbase.HTTPSequenceResolvers.class - [JAR]

├─ io.repseq.seqbase.LocalFileResolver.class - [JAR]

├─ io.repseq.seqbase.MultiSequenceResolver.class - [JAR]

├─ io.repseq.seqbase.OptionalSequenceResolver.class - [JAR]

├─ io.repseq.seqbase.ParentAwareResolver.class - [JAR]

├─ io.repseq.seqbase.SequenceAddress.class - [JAR]

├─ io.repseq.seqbase.SequenceResolver.class - [JAR]

├─ io.repseq.seqbase.SequenceResolvers.class - [JAR]

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