jar

net.fnothaft : hadoop-bam

Maven & Gradle

Sep 14, 2017
2 usages
0 stars

Hadoop-BAM · A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.

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Version Vulnerabilities Size Updated
7.9.x

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org.seqdoop.hadoop_bam

├─ org.seqdoop.hadoop_bam.AnySAMInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.AnySAMOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.BAMInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.BAMOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.BAMRecordReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.BAMRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.BAMSplitGuesser.class - [JAR]

├─ org.seqdoop.hadoop_bam.BCFRecordReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.BCFRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.BCFSplitGuesser.class - [JAR]

├─ org.seqdoop.hadoop_bam.BCFStoppableOutputStream.class - [JAR]

├─ org.seqdoop.hadoop_bam.BGZFLimitingStream.class - [JAR]

├─ org.seqdoop.hadoop_bam.BaseSplitGuesser.class - [JAR]

├─ org.seqdoop.hadoop_bam.CRAMInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.CRAMOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.CRAMRecordReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.CRAMRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.FastaInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.FastqInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.FastqOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.FileVirtualSplit.class - [JAR]

├─ org.seqdoop.hadoop_bam.FormatConstants.class - [JAR]

├─ org.seqdoop.hadoop_bam.FormatException.class - [JAR]

├─ org.seqdoop.hadoop_bam.HeaderSettableVCFCodec.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringBAMOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringBAMRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringBCFRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringCRAMOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringCRAMRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringSAMRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringVCFOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.KeyIgnoringVCFRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.LazyBAMRecord.class - [JAR]

├─ org.seqdoop.hadoop_bam.LazyBAMRecordFactory.class - [JAR]

├─ org.seqdoop.hadoop_bam.LazyBCFGenotypesContext.class - [JAR]

├─ org.seqdoop.hadoop_bam.LazyParsingGenotypesContext.class - [JAR]

├─ org.seqdoop.hadoop_bam.LazyVCFGenotypesContext.class - [JAR]

├─ org.seqdoop.hadoop_bam.LineReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.QseqInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.QseqOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.ReferenceFragment.class - [JAR]

├─ org.seqdoop.hadoop_bam.SAMFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.SAMInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.SAMRecordReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.SAMRecordWritable.class - [JAR]

├─ org.seqdoop.hadoop_bam.SAMRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.SequencedFragment.class - [JAR]

├─ org.seqdoop.hadoop_bam.SplittingBAMIndex.class - [JAR]

├─ org.seqdoop.hadoop_bam.SplittingBAMIndexer.class - [JAR]

├─ org.seqdoop.hadoop_bam.StoppableOutputStream.class - [JAR]

├─ org.seqdoop.hadoop_bam.VCFFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.VCFInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.VCFOutputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.VCFRecordReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.VCFRecordWriter.class - [JAR]

├─ org.seqdoop.hadoop_bam.VariantContextCodec.class - [JAR]

├─ org.seqdoop.hadoop_bam.VariantContextWithHeader.class - [JAR]

├─ org.seqdoop.hadoop_bam.VariantContextWritable.class - [JAR]

├─ org.seqdoop.hadoop_bam.WorkaroundingStream.class - [JAR]

htsjdk.samtools

├─ htsjdk.samtools.LinearBAMIndex.class - [JAR]

org.seqdoop.hadoop_bam.util

├─ org.seqdoop.hadoop_bam.util.BGZFBlockIndex.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFBlockIndexer.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFCodec.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFCompressionOutputStream.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFEnhancedGzipCodec.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFSplitCompressionInputStream.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFSplitFileInputFormat.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.BGZFSplitGuesser.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.ConfHelper.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.DataInputWrapper.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.DataOutputWrapper.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.GetSortedBAMHeader.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.MurmurHash3.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.NIOFileUtil.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.Pair.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.SAMFileMerger.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.SAMHeaderReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.SAMOutputPreparer.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.SeekableArrayStream.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.Timer.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.VCFFileMerger.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.VCFHeaderReader.class - [JAR]

├─ org.seqdoop.hadoop_bam.util.WrapSeekable.class - [JAR]

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