View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window eqtl-mapping-pipeline-1.3.5.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
eqtlmappingpipeline.binarymeta.meta
├─ eqtlmappingpipeline.binarymeta.meta.IndividualAnalysis.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaAnalysisCalculationThread.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaAnalysisLoaderThread.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaAnalysisPlotThread.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaAnalysisResultThread.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaAnalysisWorkPackage.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaAnalyze.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.MetaSettings.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.PValueThreshold.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.Reader.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.Result.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.ZScoreComparison.class - [JAR]
eqtlmappingpipeline.textmeta
├─ eqtlmappingpipeline.textmeta.FixedEffectMetaAnalysis.class - [JAR]
├─ eqtlmappingpipeline.textmeta.FixedEffectMetaAnalysisTask.class - [JAR]
eqtlmappingpipeline.binarymeta.util
├─ eqtlmappingpipeline.binarymeta.util.Filter.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.util.SNPAlleleCheck.class - [JAR]
eqtlmappingpipeline.ase
├─ eqtlmappingpipeline.ase.AnnotateAseWithSnpEffVcf.class - [JAR]
├─ eqtlmappingpipeline.ase.Ase.class - [JAR]
├─ eqtlmappingpipeline.ase.AseCalculator.class - [JAR]
├─ eqtlmappingpipeline.ase.AseConfiguration.class - [JAR]
├─ eqtlmappingpipeline.ase.AseException.class - [JAR]
├─ eqtlmappingpipeline.ase.AseMle.class - [JAR]
├─ eqtlmappingpipeline.ase.AseMleBeta.class - [JAR]
├─ eqtlmappingpipeline.ase.AseMleNegative.class - [JAR]
├─ eqtlmappingpipeline.ase.AseRecalculate.class - [JAR]
├─ eqtlmappingpipeline.ase.AseResults.class - [JAR]
├─ eqtlmappingpipeline.ase.AseVariant.class - [JAR]
├─ eqtlmappingpipeline.ase.AseVariantAppendable.class - [JAR]
├─ eqtlmappingpipeline.ase.AseVariantBean.class - [JAR]
├─ eqtlmappingpipeline.ase.AseVariantRecalculate.class - [JAR]
├─ eqtlmappingpipeline.ase.CompareAseFiles.class - [JAR]
├─ eqtlmappingpipeline.ase.CompareAseToEqtl.class - [JAR]
├─ eqtlmappingpipeline.ase.FindMatchingSnps.class - [JAR]
├─ eqtlmappingpipeline.ase.MultipleTestingCorrectionMethod.class - [JAR]
├─ eqtlmappingpipeline.ase.NewMain.class - [JAR]
├─ eqtlmappingpipeline.ase.ReadCountsLoader.class - [JAR]
├─ eqtlmappingpipeline.ase.SnpEffAnnotationMap.class - [JAR]
eqtlmappingpipeline.metaqtl3.graphics
├─ eqtlmappingpipeline.metaqtl3.graphics.EQTLDotPlot.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.graphics.EQTLPlotter.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.graphics.QQPlot.class - [JAR]
eqtlmappingpipeline.metaqtl3.containers
├─ eqtlmappingpipeline.metaqtl3.containers.QTL.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.containers.QTLResultContainer.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.containers.Result.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.containers.Settings.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.containers.TextResult.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.containers.WorkPackage.class - [JAR]
eqtlmappingpipeline.qcpca
├─ eqtlmappingpipeline.qcpca.QCPCA.class - [JAR]
├─ eqtlmappingpipeline.qcpca.QCPCAConsoleGui.class - [JAR]
eqtlmappingpipeline.gui
├─ eqtlmappingpipeline.gui.EQTLMappingPipelineConsole.class - [JAR]
eqtlmappingpipeline.binarymeta.meta.graphics
├─ eqtlmappingpipeline.binarymeta.meta.graphics.MultiVenn.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.graphics.PlotPackage.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.graphics.ZScorePlot.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.graphics.ZScorePlotThread.class - [JAR]
eqtlmappingpipeline.mixupmapper.stat
├─ eqtlmappingpipeline.mixupmapper.stat.PCA.class - [JAR]
eqtlmappingpipeline.chromosomeyexpressionplotter
├─ eqtlmappingpipeline.chromosomeyexpressionplotter.ChrYExpressionPlotConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.chromosomeyexpressionplotter.ChromosomeYExpressionPlot.class - [JAR]
├─ eqtlmappingpipeline.chromosomeyexpressionplotter.ChromosomeYExpressionPlotter.class - [JAR]
eqtlmappingpipeline.graphics.histogram
├─ eqtlmappingpipeline.graphics.histogram.FrequencyDistributionHistogram.class - [JAR]
├─ eqtlmappingpipeline.graphics.histogram.Histogram.class - [JAR]
├─ eqtlmappingpipeline.graphics.histogram.MultiDistrubutionHistogram.class - [JAR]
├─ eqtlmappingpipeline.graphics.histogram.MultiFrequencyDistributionHistogram.class - [JAR]
eqtlmappingpipeline.mixupmapper.stat.dist
├─ eqtlmappingpipeline.mixupmapper.stat.dist.Bin.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.stat.dist.DiscreteDist.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.stat.dist.Dist.class - [JAR]
eqtlmappingpipeline.binarymeta.meta.cis
├─ eqtlmappingpipeline.binarymeta.meta.cis.BinaryUnzipTask.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.cis.CalcThread.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.cis.CisAnalysis.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.cis.CisBinaryConverter.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.cis.ResultProcessor.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.cis.UnzipTask.class - [JAR]
├─ eqtlmappingpipeline.binarymeta.meta.cis.ZScoreLoaderTask.class - [JAR]
eqtlmappingpipeline.eQTLFoldChangeCalculator
├─ eqtlmappingpipeline.eQTLFoldChangeCalculator.QTLFoldChangeCalculator.class - [JAR]
├─ eqtlmappingpipeline.eQTLFoldChangeCalculator.QTLFoldChangeCalculatorGUI.class - [JAR]
eqtlmappingpipeline.metaqtl4
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4BinaryResultFile.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4ConsoleUI.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4CorrelationTask.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4CorrelationTask2.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4Dataset.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4DatasetSettings.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4ExecutionTask.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4MetaTrait.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4MetaTraitTreeSet.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4QTL.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4Settings.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.MetaQTL4TraitAnnotation.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.SingleDatasetAnalysis.class - [JAR]
├─ eqtlmappingpipeline.metaqtl4.SingleDatasetAnalysisTask.class - [JAR]
eqtlmappingpipeline.metaqtl3
├─ eqtlmappingpipeline.metaqtl3.CalculationThread.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.EQTLRegression.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.FDR.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.MetaQTL3.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.MetaQTL3ConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.ResultProcessorThread.class - [JAR]
├─ eqtlmappingpipeline.metaqtl3.WorkPackageProducer.class - [JAR]
eqtlmappingpipeline
├─ eqtlmappingpipeline.Main.class - [JAR]
eqtlmappingpipeline.causalinference
├─ eqtlmappingpipeline.causalinference.IVAnalysis.class - [JAR]
├─ eqtlmappingpipeline.causalinference.IVConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.causalinference.Mediation.class - [JAR]
eqtlmappingpipeline.binarymeta
├─ eqtlmappingpipeline.binarymeta.Main.class - [JAR]
eqtlmappingpipeline.graphics.map
├─ eqtlmappingpipeline.graphics.map.Heatmap.class - [JAR]
├─ eqtlmappingpipeline.graphics.map.MixupMapperHeatMap.class - [JAR]
eqtlmappingpipeline.interactionanalysis
├─ eqtlmappingpipeline.interactionanalysis.InteractionAnalysisConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.interactionanalysis.InteractionAnalysisDetermineDirection.class - [JAR]
├─ eqtlmappingpipeline.interactionanalysis.InteractionAnalysisMultiThreaded.class - [JAR]
├─ eqtlmappingpipeline.interactionanalysis.InteractionAnalysisResults.class - [JAR]
├─ eqtlmappingpipeline.interactionanalysis.InteractionAnalysisTask.class - [JAR]
├─ eqtlmappingpipeline.interactionanalysis.InteractionPlotter.class - [JAR]
eqtlmappingpipeline.binaryInteraction
├─ eqtlmappingpipeline.binaryInteraction.BinaryInteractionMetaAnalysis.class - [JAR]
├─ eqtlmappingpipeline.binaryInteraction.ConvertTextOutputToBinary.class - [JAR]
├─ eqtlmappingpipeline.binaryInteraction.CovariateImportance.class - [JAR]
├─ eqtlmappingpipeline.binaryInteraction.InvestigateCovariate.class - [JAR]
├─ eqtlmappingpipeline.binaryInteraction.QueryBinaryInteraction.class - [JAR]
├─ eqtlmappingpipeline.binaryInteraction.ReplicateInteractions.class - [JAR]
eqtlmappingpipeline.mixupmapper
├─ eqtlmappingpipeline.mixupmapper.MixupMapper.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.MixupMapperConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.MixupMapperVisualization.class - [JAR]
eqtlmappingpipeline.util
├─ eqtlmappingpipeline.util.BinaryResultFileConverter.class - [JAR]
├─ eqtlmappingpipeline.util.CisEQTLProbeSNPLDCheck.class - [JAR]
├─ eqtlmappingpipeline.util.ExpressionDataQuery.class - [JAR]
├─ eqtlmappingpipeline.util.ExpressionFileMerger.class - [JAR]
├─ eqtlmappingpipeline.util.GenotypeDataMerger.class - [JAR]
├─ eqtlmappingpipeline.util.GenotypeDataQuery.class - [JAR]
├─ eqtlmappingpipeline.util.LDCalculator.class - [JAR]
├─ eqtlmappingpipeline.util.NoLdSnpProbeListCreator.class - [JAR]
├─ eqtlmappingpipeline.util.ProbeSNPMapper.class - [JAR]
├─ eqtlmappingpipeline.util.ProbeSpecificFDR.class - [JAR]
├─ eqtlmappingpipeline.util.QTLAnnotator.class - [JAR]
├─ eqtlmappingpipeline.util.QTLDotPlotter.class - [JAR]
├─ eqtlmappingpipeline.util.QTLFileCompare.class - [JAR]
├─ eqtlmappingpipeline.util.QTLFileSorter.class - [JAR]
├─ eqtlmappingpipeline.util.QTLLookup.class - [JAR]
├─ eqtlmappingpipeline.util.QTLmeQTLCompare.class - [JAR]
├─ eqtlmappingpipeline.util.RegressCisEffectsFromGeneExpressionData.class - [JAR]
├─ eqtlmappingpipeline.util.UtilConsoleGUI.class - [JAR]
eqtlmappingpipeline.pcaoptimum
├─ eqtlmappingpipeline.pcaoptimum.PCAOptimum.class - [JAR]
├─ eqtlmappingpipeline.pcaoptimum.PCAOptimumConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.pcaoptimum.PCAOptimumInventorize.class - [JAR]
├─ eqtlmappingpipeline.pcaoptimum.PCAOptimumPlot.class - [JAR]
eqtlmappingpipeline.util.HiC
├─ eqtlmappingpipeline.util.HiC.GetStatistics.class - [JAR]
├─ eqtlmappingpipeline.util.HiC.HiCQTLAnnotatorBlockbased.class - [JAR]
├─ eqtlmappingpipeline.util.HiC.HiCQTLAnnotatorSnpBased.class - [JAR]
├─ eqtlmappingpipeline.util.HiC.HiCQTLProbeAnnotatorSnpBased.class - [JAR]
eqtlmappingpipeline.mixupmapper.containers
├─ eqtlmappingpipeline.mixupmapper.containers.Family.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.containers.Individual.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.containers.Matrix.class - [JAR]
├─ eqtlmappingpipeline.mixupmapper.containers.Trio.class - [JAR]
eqtlmappingpipeline.conditionalanalysis
├─ eqtlmappingpipeline.conditionalanalysis.ConditionalAnalysis.class - [JAR]
├─ eqtlmappingpipeline.conditionalanalysis.ConditionalAnalysisConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.conditionalanalysis.IterativeConditionalAnalysis.class - [JAR]
eqtlmappingpipeline.graphics
├─ eqtlmappingpipeline.graphics.Graphics.class - [JAR]
├─ eqtlmappingpipeline.graphics.ScatterPlot.class - [JAR]
eqtlmappingpipeline.normalization
├─ eqtlmappingpipeline.normalization.NormalizationConsoleGUI.class - [JAR]
├─ eqtlmappingpipeline.normalization.Normalizer.class - [JAR]
org.apache.commons.math3.stat.inference
├─ org.apache.commons.math3.stat.inference.AlternativeHypothesis.class - [JAR]
├─ org.apache.commons.math3.stat.inference.BinomialTest.class - [JAR]
eqtlmappingpipeline.graphics.curve
├─ eqtlmappingpipeline.graphics.curve.Curve.class - [JAR]
├─ eqtlmappingpipeline.graphics.curve.ROCCurve.class - [JAR]
