View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window genetica-libraries-1.0.7.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
umcg.genetica.io.trityper.bin
├─ umcg.genetica.io.trityper.bin.BinaryGZipFloatMatrix.class - [JAR]
├─ umcg.genetica.io.trityper.bin.BinaryResultDataset.class - [JAR]
├─ umcg.genetica.io.trityper.bin.BinaryResultProbe.class - [JAR]
├─ umcg.genetica.io.trityper.bin.BinaryResultProbeSummary.class - [JAR]
├─ umcg.genetica.io.trityper.bin.BinaryResultSNP.class - [JAR]
├─ umcg.genetica.io.trityper.bin.BinaryResultSNPSummary.class - [JAR]
umcg.genetica.text
├─ umcg.genetica.text.Strings.class - [JAR]
umcg.genetica.ncbi.dbsnp
├─ umcg.genetica.ncbi.dbsnp.SNPAnnotation.class - [JAR]
umcg.genetica.legacy
├─ umcg.genetica.legacy.ExpressionDataset.class - [JAR]
umcg.genetica.containers
├─ umcg.genetica.containers.Chromosome.class - [JAR]
├─ umcg.genetica.containers.Exon.class - [JAR]
├─ umcg.genetica.containers.Gene.class - [JAR]
├─ umcg.genetica.containers.Pair.class - [JAR]
├─ umcg.genetica.containers.SortableSNP.class - [JAR]
├─ umcg.genetica.containers.StringDoubleObject.class - [JAR]
├─ umcg.genetica.containers.StringIntegerObject.class - [JAR]
├─ umcg.genetica.containers.Transcript.class - [JAR]
├─ umcg.genetica.containers.Triple.class - [JAR]
umcg.genetica.io.bedgraph
├─ umcg.genetica.io.bedgraph.BedGraphEntry.class - [JAR]
├─ umcg.genetica.io.bedgraph.BedGraphFile.class - [JAR]
umcg.genetica.gwas
├─ umcg.genetica.gwas.Dependifier.class - [JAR]
├─ umcg.genetica.gwas.Independifier.class - [JAR]
umcg.genetica.io.ucsc
├─ umcg.genetica.io.ucsc.PeakFile.class - [JAR]
├─ umcg.genetica.io.ucsc.UCSCDataObject.class - [JAR]
├─ umcg.genetica.io.ucsc.UCSCTrack.class - [JAR]
├─ umcg.genetica.io.ucsc.WigFile.class - [JAR]
umcg.genetica.io.gtf
├─ umcg.genetica.io.gtf.GffAttributeFilter.class - [JAR]
├─ umcg.genetica.io.gtf.GffElement.class - [JAR]
├─ umcg.genetica.io.gtf.GffElementIterator.class - [JAR]
├─ umcg.genetica.io.gtf.GffReaderInterface.class - [JAR]
├─ umcg.genetica.io.gtf.GtfReader.class - [JAR]
├─ umcg.genetica.io.gtf.TestGffIntervalTree.class - [JAR]
umcg.genetica.math.stats.concurrent
├─ umcg.genetica.math.stats.concurrent.ConcurrentBrayCurtis.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentBrayCurtisTask.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentCityBlock.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentCityBlockTask.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentCorrelation.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentCorrelationTask.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentCovariation.class - [JAR]
├─ umcg.genetica.math.stats.concurrent.ConcurrentCovariationTask.class - [JAR]
umcg.genetica.graphics
├─ umcg.genetica.graphics.ForestPlot.class - [JAR]
├─ umcg.genetica.graphics.Heatmap.class - [JAR]
├─ umcg.genetica.graphics.ScatterPlot.class - [JAR]
├─ umcg.genetica.graphics.VennDiagram.class - [JAR]
├─ umcg.genetica.graphics.ViolinBoxPlot.class - [JAR]
umcg.genetica.io.regulomedb
├─ umcg.genetica.io.regulomedb.RegulomeDbEntry.class - [JAR]
├─ umcg.genetica.io.regulomedb.RegulomeDbFile.class - [JAR]
├─ umcg.genetica.io.regulomedb.RegulomeDbFiles.class - [JAR]
├─ umcg.genetica.io.regulomedb.RegulomeDbIterator.class - [JAR]
├─ umcg.genetica.io.regulomedb.RegulomeDbSupportingData.class - [JAR]
umcg.genetica.methylation
├─ umcg.genetica.methylation.AssociatingPcasWithAnnotation.class - [JAR]
├─ umcg.genetica.methylation.CheckMatrixForValidBetaValues.class - [JAR]
├─ umcg.genetica.methylation.ConvertBetaAndMvalues.class - [JAR]
├─ umcg.genetica.methylation.ConverteUandMTo.class - [JAR]
├─ umcg.genetica.methylation.DeepCopy.class - [JAR]
├─ umcg.genetica.methylation.MethylationAssociatoingAnnotationWithValues.class - [JAR]
├─ umcg.genetica.methylation.ParseTcgaMethylationFile.class - [JAR]
├─ umcg.genetica.methylation.SoftfileAnnotation.class - [JAR]
umcg.genetica.collections.intervaltree
├─ umcg.genetica.collections.intervaltree.IntervalTree.class - [JAR]
├─ umcg.genetica.collections.intervaltree.IntervalTreeNode.class - [JAR]
├─ umcg.genetica.collections.intervaltree.PerChrIntervalTree.class - [JAR]
├─ umcg.genetica.collections.intervaltree.Range.class - [JAR]
├─ umcg.genetica.collections.intervaltree.RangeEndReverseComparator.class - [JAR]
├─ umcg.genetica.collections.intervaltree.RangeStartComparator.class - [JAR]
├─ umcg.genetica.collections.intervaltree.StringRange.class - [JAR]
umcg.genetica.io.probemapping
├─ umcg.genetica.io.probemapping.reading.class - [JAR]
umcg.genetica.io.binInteraction.gene
├─ umcg.genetica.io.binInteraction.gene.BinaryInteractionGene.class - [JAR]
├─ umcg.genetica.io.binInteraction.gene.BinaryInteractionGeneAbstract.class - [JAR]
├─ umcg.genetica.io.binInteraction.gene.BinaryInteractionGeneCreator.class - [JAR]
├─ umcg.genetica.io.binInteraction.gene.BinaryInteractionGeneStatic.class - [JAR]
umcg.genetica.util
├─ umcg.genetica.util.CheckAssocationMultipleGeneProbes.class - [JAR]
├─ umcg.genetica.util.InplaceArrayQuickSort.class - [JAR]
├─ umcg.genetica.util.MultiThreadedInPlaceQuickSort.class - [JAR]
├─ umcg.genetica.util.Primitives.class - [JAR]
├─ umcg.genetica.util.RankArray.class - [JAR]
├─ umcg.genetica.util.RankDoubleArray.class - [JAR]
├─ umcg.genetica.util.RankIntArray.class - [JAR]
├─ umcg.genetica.util.RunTimer.class - [JAR]
├─ umcg.genetica.util.SmoothSort.class - [JAR]
├─ umcg.genetica.util.StringDoubleObjectSorterSortOnDouble.class - [JAR]
├─ umcg.genetica.util.StringIntegerObjectSorterSortOnInteger.class - [JAR]
├─ umcg.genetica.util.VectorSorter.class - [JAR]
├─ umcg.genetica.util.WriteFastaOfInterestRegion.class - [JAR]
umcg.genetica.io.concurrent
├─ umcg.genetica.io.concurrent.DoubleParseTask.class - [JAR]
umcg.genetica.io.trityper
├─ umcg.genetica.io.trityper.BufferedSNPLoader.class - [JAR]
├─ umcg.genetica.io.trityper.ConvertDoubleMatrixDataToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.ConvertHLAHaplotypesToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.EQTL.class - [JAR]
├─ umcg.genetica.io.trityper.MinimalEQTL.class - [JAR]
├─ umcg.genetica.io.trityper.ProbeAnnotation.class - [JAR]
├─ umcg.genetica.io.trityper.QTLTextFile.class - [JAR]
├─ umcg.genetica.io.trityper.SNP.class - [JAR]
├─ umcg.genetica.io.trityper.SNPLoader.class - [JAR]
├─ umcg.genetica.io.trityper.TriTyperExpressionData.class - [JAR]
├─ umcg.genetica.io.trityper.TriTyperGeneticalGenomicsDataset.class - [JAR]
├─ umcg.genetica.io.trityper.TriTyperGeneticalGenomicsDatasetSettings.class - [JAR]
├─ umcg.genetica.io.trityper.TriTyperGenotypeData.class - [JAR]
├─ umcg.genetica.io.trityper.TriTyperSNPMappings.class - [JAR]
├─ umcg.genetica.io.trityper.WGAFileMatrixGenotype.class - [JAR]
├─ umcg.genetica.io.trityper.WGAFileMatrixImputedDosage.class - [JAR]
├─ umcg.genetica.io.trityper.WGAFileMatrixRawData.class - [JAR]
umcg.genetica.io.gwascatalog
├─ umcg.genetica.io.gwascatalog.GWASCatalog.class - [JAR]
├─ umcg.genetica.io.gwascatalog.GWASLocus.class - [JAR]
├─ umcg.genetica.io.gwascatalog.GWASPublication.class - [JAR]
├─ umcg.genetica.io.gwascatalog.GWASSNP.class - [JAR]
├─ umcg.genetica.io.gwascatalog.GWASTrait.class - [JAR]
umcg.genetica.genomicboundaries
├─ umcg.genetica.genomicboundaries.GenomicBoundaries.class - [JAR]
├─ umcg.genetica.genomicboundaries.GenomicBoundariesIterator.class - [JAR]
├─ umcg.genetica.genomicboundaries.GenomicBoundariesSimple.class - [JAR]
├─ umcg.genetica.genomicboundaries.GenomicBoundary.class - [JAR]
umcg.genetica.math.stats
├─ umcg.genetica.math.stats.AUC.class - [JAR]
├─ umcg.genetica.math.stats.AndersonDarling.class - [JAR]
├─ umcg.genetica.math.stats.Binning.class - [JAR]
├─ umcg.genetica.math.stats.ChiSquare.class - [JAR]
├─ umcg.genetica.math.stats.Correlation.class - [JAR]
├─ umcg.genetica.math.stats.Descriptives.class - [JAR]
├─ umcg.genetica.math.stats.FDRUtils.class - [JAR]
├─ umcg.genetica.math.stats.FisherExactTest.class - [JAR]
├─ umcg.genetica.math.stats.HWE.class - [JAR]
├─ umcg.genetica.math.stats.Heterogeneity.class - [JAR]
├─ umcg.genetica.math.stats.KolmogorovSmirnov.class - [JAR]
├─ umcg.genetica.math.stats.Log2Transform.class - [JAR]
├─ umcg.genetica.math.stats.Normalization.class - [JAR]
├─ umcg.genetica.math.stats.QValues.class - [JAR]
├─ umcg.genetica.math.stats.QuantileNormalization.class - [JAR]
├─ umcg.genetica.math.stats.Regression.class - [JAR]
├─ umcg.genetica.math.stats.TTest.class - [JAR]
├─ umcg.genetica.math.stats.TheilSen.class - [JAR]
├─ umcg.genetica.math.stats.TwoStepLeastSquares.class - [JAR]
├─ umcg.genetica.math.stats.WilcoxonMannWhitney.class - [JAR]
├─ umcg.genetica.math.stats.ZScores.class - [JAR]
umcg.genetica.ensembl
├─ umcg.genetica.ensembl.Features.class - [JAR]
umcg.genetica.io.fasta
├─ umcg.genetica.io.fasta.LargeByteArray.class - [JAR]
├─ umcg.genetica.io.fasta.ReferenceGenomeFasta.class - [JAR]
umcg.genetica.math.matrix
├─ umcg.genetica.math.matrix.DoubleMatrixDataset.class - [JAR]
├─ umcg.genetica.math.matrix.DoubleMatrixDatasetAC.class - [JAR]
├─ umcg.genetica.math.matrix.DoubleMatrixDatasetRA.class - [JAR]
├─ umcg.genetica.math.matrix.MatrixHandling.class - [JAR]
├─ umcg.genetica.math.matrix.MatrixTools.class - [JAR]
├─ umcg.genetica.math.matrix.MergeDoubleMatrices.class - [JAR]
├─ umcg.genetica.math.matrix.SymmetricByteDistanceMatrix.class - [JAR]
├─ umcg.genetica.math.matrix.SymmetricShortDistanceMatrix.class - [JAR]
umcg.genetica.io.trityper.probeannotation
├─ umcg.genetica.io.trityper.probeannotation.ProbeAnnotation.class - [JAR]
├─ umcg.genetica.io.trityper.probeannotation.ProbeTranslation.class - [JAR]
umcg.genetica.variantAnnotator
├─ umcg.genetica.variantAnnotator.GenomicRange.class - [JAR]
├─ umcg.genetica.variantAnnotator.VariantAnnotator.class - [JAR]
umcg.genetica.io.bed
├─ umcg.genetica.io.bed.BedEntry.class - [JAR]
├─ umcg.genetica.io.bed.BedFile.class - [JAR]
umcg.genetica.io
├─ umcg.genetica.io.Gpio.class - [JAR]
umcg.genetica.math
├─ umcg.genetica.math.Fmath.class - [JAR]
├─ umcg.genetica.math.Goniometry.class - [JAR]
├─ umcg.genetica.math.PCA.class - [JAR]
umcg.genetica.io.pileup
├─ umcg.genetica.io.pileup.PileupEntry.class - [JAR]
├─ umcg.genetica.io.pileup.PileupFile.class - [JAR]
├─ umcg.genetica.io.pileup.PileupParseException.class - [JAR]
├─ umcg.genetica.io.pileup.PileupToVcf.class - [JAR]
umcg.genetica.io.trityper.util
├─ umcg.genetica.io.trityper.util.BaseAnnot.class - [JAR]
├─ umcg.genetica.io.trityper.util.ChrAnnotation.class - [JAR]
├─ umcg.genetica.io.trityper.util.CompareAllelicDirections.class - [JAR]
├─ umcg.genetica.io.trityper.util.DetermineLD.class - [JAR]
├─ umcg.genetica.io.trityper.util.TriTyperConcatDatasets.class - [JAR]
├─ umcg.genetica.io.trityper.util.TriTyperGenotypeDataMerger.class - [JAR]
umcg.genetica.math.matrix2
├─ umcg.genetica.math.matrix2.DoubleMatrixDataset.class - [JAR]
├─ umcg.genetica.math.matrix2.MatrixHandling.class - [JAR]
├─ umcg.genetica.math.matrix2.MatrixTools.class - [JAR]
├─ umcg.genetica.math.matrix2.MergeDoubleMatrices.class - [JAR]
umcg.genetica.collections
├─ umcg.genetica.collections.ChrPosMap.class - [JAR]
├─ umcg.genetica.collections.ChrPosTreeMap.class - [JAR]
umcg.genetica.io.chrContacts
├─ umcg.genetica.io.chrContacts.ChrContact.class - [JAR]
├─ umcg.genetica.io.chrContacts.DesiredChrContact.class - [JAR]
├─ umcg.genetica.io.chrContacts.SortInterChrContacts.class - [JAR]
├─ umcg.genetica.io.chrContacts.SortIntraChrContacts.class - [JAR]
umcg.genetica.io.trityper.converters
├─ umcg.genetica.io.trityper.converters.BeagleImputedToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.FinalReportToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.ImputeImputedToTriTyperV2.class - [JAR]
├─ umcg.genetica.io.trityper.converters.InversionCallsToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.MachImputedToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.MachImputedTransposedDosageToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.MinimacImputedToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.PedAndMapToTriTyper.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperReferenceConcordantPedAndMapExporter.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperToDosageConverter.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperToMachImputedTransposed.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperToPedAndMapConverter.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperToPlinkDosage.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperToTabSeparated.class - [JAR]
├─ umcg.genetica.io.trityper.converters.TriTyperToVCF.class - [JAR]
├─ umcg.genetica.io.trityper.converters.VCFToTriTyper.class - [JAR]
com.mastfrog.util.streams
├─ com.mastfrog.util.streams.HashingInputStream.class - [JAR]
├─ com.mastfrog.util.streams.HashingOutputStream.class - [JAR]
umcg.genetica.io.binInteraction
├─ umcg.genetica.io.binInteraction.BinaryInteractionCohort.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionCovariateIterator.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionFile.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionFileConstructorBuilder.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionFileCreator.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionFileException.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionQtlZscores.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionQueryResult.class - [JAR]
├─ umcg.genetica.io.binInteraction.BinaryInteractionZscores.class - [JAR]
umcg.genetica.io.gmt
├─ umcg.genetica.io.gmt.GMTFile.class - [JAR]
umcg.genetica.io.text.converters
├─ umcg.genetica.io.text.converters.NetworkConverter.class - [JAR]
umcg.genetica.io.text
├─ umcg.genetica.io.text.TextFile.class - [JAR]
umcg.genetica.text.parsing
├─ umcg.genetica.text.parsing.Demographics.class - [JAR]
umcg.genetica.console
├─ umcg.genetica.console.ConsoleGUIElems.class - [JAR]
├─ umcg.genetica.console.ProgressBar.class - [JAR]
umcg.genetica.io.binInteraction.variant
├─ umcg.genetica.io.binInteraction.variant.BinaryInteractionVariant.class - [JAR]
├─ umcg.genetica.io.binInteraction.variant.BinaryInteractionVariantAbstract.class - [JAR]
├─ umcg.genetica.io.binInteraction.variant.BinaryInteractionVariantCreator.class - [JAR]
├─ umcg.genetica.io.binInteraction.variant.BinaryInteractionVariantStatic.class - [JAR]
umcg.genetica.math.interpolation
├─ umcg.genetica.math.interpolation.CubicSpline.class - [JAR]
umcg.genetica.io.geofiles
├─ umcg.genetica.io.geofiles.ParseSoftFile.class - [JAR]
├─ umcg.genetica.io.geofiles.ParseTextTable.class - [JAR]
umcg.genetica.io.bin
├─ umcg.genetica.io.bin.BinaryFile.class - [JAR]
├─ umcg.genetica.io.bin.RandomAccessFile.class - [JAR]
