View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window adam-core-spark3_2.12-1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.bdgenomics.adam.ds.read.recalibration
├─ org.bdgenomics.adam.ds.read.recalibration.Aggregate.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.BaseQualityRecalibration.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.Covariate.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.CovariateKey.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.CovariateSpace.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.CycleCovariate.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.DinucCovariate.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.ExtrasTable.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.Observation.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.ObservationTable.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.QualityTable.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.RecalibrationTable.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.Recalibrator.class - [JAR]
├─ org.bdgenomics.adam.ds.read.recalibration.TempRecalibrationTable.class - [JAR]
org.bdgenomics.adam.projections
├─ org.bdgenomics.adam.projections.AlignmentField.class - [JAR]
├─ org.bdgenomics.adam.projections.DbxrefField.class - [JAR]
├─ org.bdgenomics.adam.projections.FeatureField.class - [JAR]
├─ org.bdgenomics.adam.projections.FieldEnumeration.class - [JAR]
├─ org.bdgenomics.adam.projections.FieldValue.class - [JAR]
├─ org.bdgenomics.adam.projections.Filter.class - [JAR]
├─ org.bdgenomics.adam.projections.FragmentField.class - [JAR]
├─ org.bdgenomics.adam.projections.GenotypeField.class - [JAR]
├─ org.bdgenomics.adam.projections.OntologyTermField.class - [JAR]
├─ org.bdgenomics.adam.projections.Projection.class - [JAR]
├─ org.bdgenomics.adam.projections.ReadField.class - [JAR]
├─ org.bdgenomics.adam.projections.ReadGroupField.class - [JAR]
├─ org.bdgenomics.adam.projections.ReferenceField.class - [JAR]
├─ org.bdgenomics.adam.projections.SampleField.class - [JAR]
├─ org.bdgenomics.adam.projections.SequenceField.class - [JAR]
├─ org.bdgenomics.adam.projections.SliceField.class - [JAR]
├─ org.bdgenomics.adam.projections.TranscriptEffectField.class - [JAR]
├─ org.bdgenomics.adam.projections.VariantAnnotationField.class - [JAR]
├─ org.bdgenomics.adam.projections.VariantCallingAnnotationsField.class - [JAR]
├─ org.bdgenomics.adam.projections.VariantField.class - [JAR]
org.bdgenomics.adam.ds.read.realignment
├─ org.bdgenomics.adam.ds.read.realignment.IndelRealignmentTarget.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.IndelRealignmentTargetArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.IndelRealignmentTargetSerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.ModPartitioner.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.RealignIndels.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.RealignmentTargetFinder.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.TargetOrdering.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.TargetSet.class - [JAR]
├─ org.bdgenomics.adam.ds.read.realignment.TargetSetSerializer.class - [JAR]
org.bdgenomics.adam.rich
├─ org.bdgenomics.adam.rich.RichAlignment.class - [JAR]
├─ org.bdgenomics.adam.rich.RichCigar.class - [JAR]
├─ org.bdgenomics.adam.rich.RichVariant.class - [JAR]
org.bdgenomics.adam.ds.variant
├─ org.bdgenomics.adam.ds.variant.ADAMVCFOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.DatasetBoundGenotypeDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.DatasetBoundVariantContextDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.DatasetBoundVariantDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.GenotypeArray.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.GenotypeArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.GenotypeDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.ParquetUnboundGenotypeDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.ParquetUnboundVariantDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.RDDBoundGenotypeDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.RDDBoundVariantContextDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.RDDBoundVariantDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VCFInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VCFOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VariantArray.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VariantArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VariantContextArray.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VariantContextArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VariantContextDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.variant.VariantDataset.class - [JAR]
org.bdgenomics.adam.models
├─ org.bdgenomics.adam.models.Alphabet.class - [JAR]
├─ org.bdgenomics.adam.models.Attribute.class - [JAR]
├─ org.bdgenomics.adam.models.Coverage.class - [JAR]
├─ org.bdgenomics.adam.models.DNAAlphabet.class - [JAR]
├─ org.bdgenomics.adam.models.IUPACAlphabet.class - [JAR]
├─ org.bdgenomics.adam.models.IndelTable.class - [JAR]
├─ org.bdgenomics.adam.models.MdTag.class - [JAR]
├─ org.bdgenomics.adam.models.MdTagEvent.class - [JAR]
├─ org.bdgenomics.adam.models.MultiContigNonoverlappingRegions.class - [JAR]
├─ org.bdgenomics.adam.models.NonoverlappingRegions.class - [JAR]
├─ org.bdgenomics.adam.models.OptionalPositionOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.OptionalReferenceOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.OptionalRegionOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.PositionOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.ReadGroup.class - [JAR]
├─ org.bdgenomics.adam.models.ReadGroupDictionary.class - [JAR]
├─ org.bdgenomics.adam.models.ReferenceOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.ReferencePosition.class - [JAR]
├─ org.bdgenomics.adam.models.ReferencePositionSerializer.class - [JAR]
├─ org.bdgenomics.adam.models.ReferenceRegion.class - [JAR]
├─ org.bdgenomics.adam.models.ReferenceRegionSerializer.class - [JAR]
├─ org.bdgenomics.adam.models.RegionOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.SAMFileHeaderWritable.class - [JAR]
├─ org.bdgenomics.adam.models.SequenceDictionary.class - [JAR]
├─ org.bdgenomics.adam.models.SequenceOrderingByName.class - [JAR]
├─ org.bdgenomics.adam.models.SequenceOrderingByRefIdx.class - [JAR]
├─ org.bdgenomics.adam.models.SequenceRecord.class - [JAR]
├─ org.bdgenomics.adam.models.SnpTable.class - [JAR]
├─ org.bdgenomics.adam.models.SnpTableSerializer.class - [JAR]
├─ org.bdgenomics.adam.models.Symbol.class - [JAR]
├─ org.bdgenomics.adam.models.TagType.class - [JAR]
├─ org.bdgenomics.adam.models.VCFHeaderWritable.class - [JAR]
├─ org.bdgenomics.adam.models.VariantContext.class - [JAR]
├─ org.bdgenomics.adam.models.VariantContextSerializer.class - [JAR]
org.bdgenomics.adam.algorithms.smithwaterman
├─ org.bdgenomics.adam.algorithms.smithwaterman.SmithWaterman.class - [JAR]
├─ org.bdgenomics.adam.algorithms.smithwaterman.SmithWatermanConstantGapScoring.class - [JAR]
├─ org.bdgenomics.adam.algorithms.smithwaterman.SmithWatermanGapScoringFromFn.class - [JAR]
org.bdgenomics.adam.converters
├─ org.bdgenomics.adam.converters.AlignmentConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.DefaultHeaderLines.class - [JAR]
├─ org.bdgenomics.adam.converters.FastaConverters.class - [JAR]
├─ org.bdgenomics.adam.converters.FastaDescriptionLine.class - [JAR]
├─ org.bdgenomics.adam.converters.FastaSequenceConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.FastaSliceConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.FastqRecordConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.FragmentCollector.class - [JAR]
├─ org.bdgenomics.adam.converters.FragmentConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.TranscriptEffectConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.VariantContextConverter.class - [JAR]
org.bdgenomics.adam.ds
├─ org.bdgenomics.adam.ds.ADAMContext.class - [JAR]
├─ org.bdgenomics.adam.ds.ADAMParquetInputFormat.class - [JAR]
├─ org.bdgenomics.adam.ds.ADAMSaveAnyArgs.class - [JAR]
├─ org.bdgenomics.adam.ds.AvroGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.AvroReadGroupGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.DatasetBoundGenericGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.DatasetBoundGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.FileFilter.class - [JAR]
├─ org.bdgenomics.adam.ds.FullOuterShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.GenericConverter.class - [JAR]
├─ org.bdgenomics.adam.ds.GenericGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomeBins.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomicBroadcast.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomicDatasetConversion.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomicDatasetWithLineage.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomicPositionPartitioner.class - [JAR]
├─ org.bdgenomics.adam.ds.GenomicRegionPartitioner.class - [JAR]
├─ org.bdgenomics.adam.ds.InFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.InFormatterCompanion.class - [JAR]
├─ org.bdgenomics.adam.ds.InFormatterRunner.class - [JAR]
├─ org.bdgenomics.adam.ds.InnerShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.InnerShuffleRegionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.ds.InnerTreeRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.InnerTreeRegionJoinAndGroupByRight.class - [JAR]
├─ org.bdgenomics.adam.ds.JavaSaveArgs.class - [JAR]
├─ org.bdgenomics.adam.ds.LeftOuterShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.LeftOuterShuffleRegionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.ds.LocatableReferenceRegion.class - [JAR]
├─ org.bdgenomics.adam.ds.MultisampleAvroGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.MultisampleGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.NoPrefixFileFilter.class - [JAR]
├─ org.bdgenomics.adam.ds.OutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.OutFormatterRunner.class - [JAR]
├─ org.bdgenomics.adam.ds.RDDBoundGenericGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.ReferencePartitioner.class - [JAR]
├─ org.bdgenomics.adam.ds.RegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.RightOuterShuffleRegionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.ds.RightOuterTreeRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.RightOuterTreeRegionJoinAndGroupByRight.class - [JAR]
├─ org.bdgenomics.adam.ds.SAMHeaderWriter.class - [JAR]
├─ org.bdgenomics.adam.ds.SetTheoryCache.class - [JAR]
├─ org.bdgenomics.adam.ds.ShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.SortedIntervalPartitionJoinWithVictims.class - [JAR]
├─ org.bdgenomics.adam.ds.TagHolder.class - [JAR]
├─ org.bdgenomics.adam.ds.TreeRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.ds.VCFHeaderUtils.class - [JAR]
├─ org.bdgenomics.adam.ds.VCFSupportingGenomicDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.VictimlessSortedIntervalPartitionJoin.class - [JAR]
org.bdgenomics.adam.util
├─ org.bdgenomics.adam.util.ADAMShell.class - [JAR]
├─ org.bdgenomics.adam.util.ASCIITable.class - [JAR]
├─ org.bdgenomics.adam.util.ASCIITableHeader.class - [JAR]
├─ org.bdgenomics.adam.util.AttributeUtils.class - [JAR]
├─ org.bdgenomics.adam.util.FileExtensions.class - [JAR]
├─ org.bdgenomics.adam.util.FileMerger.class - [JAR]
├─ org.bdgenomics.adam.util.GenomeFileReader.class - [JAR]
├─ org.bdgenomics.adam.util.IndexedFastaFile.class - [JAR]
├─ org.bdgenomics.adam.util.ManualRegionPartitioner.class - [JAR]
├─ org.bdgenomics.adam.util.ParallelFileMerger.class - [JAR]
├─ org.bdgenomics.adam.util.ParquetFileTraversable.class - [JAR]
├─ org.bdgenomics.adam.util.ParquetLogger.class - [JAR]
├─ org.bdgenomics.adam.util.PhredUtils.class - [JAR]
├─ org.bdgenomics.adam.util.ReferenceFile.class - [JAR]
├─ org.bdgenomics.adam.util.ReferenceMap.class - [JAR]
├─ org.bdgenomics.adam.util.ReferenceMapSerializer.class - [JAR]
├─ org.bdgenomics.adam.util.SequenceDictionaryReader.class - [JAR]
├─ org.bdgenomics.adam.util.TextAlignment.class - [JAR]
├─ org.bdgenomics.adam.util.TextRddWriter.class - [JAR]
├─ org.bdgenomics.adam.util.TwoBitFile.class - [JAR]
├─ org.bdgenomics.adam.util.TwoBitFileSerializer.class - [JAR]
├─ org.bdgenomics.adam.util.TwoBitRecord.class - [JAR]
org.bdgenomics.adam.ds.read
├─ org.bdgenomics.adam.ds.read.ADAMBAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ADAMBAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ADAMCRAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ADAMCRAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ADAMSAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ADAMSAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AlignmentArray.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AlignmentArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AlignmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AlignmentWindow.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AnySAMInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AnySAMInFormatterCompanion.class - [JAR]
├─ org.bdgenomics.adam.ds.read.AnySAMOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.read.BAMInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.read.BinQualities.class - [JAR]
├─ org.bdgenomics.adam.ds.read.DatasetBoundAlignmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.DatasetBoundReadDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.DuplicateMetrics.class - [JAR]
├─ org.bdgenomics.adam.ds.read.FASTQInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.read.FlagStat.class - [JAR]
├─ org.bdgenomics.adam.ds.read.FlagStatMetrics.class - [JAR]
├─ org.bdgenomics.adam.ds.read.FragmentIterator.class - [JAR]
├─ org.bdgenomics.adam.ds.read.IncorrectMDTagException.class - [JAR]
├─ org.bdgenomics.adam.ds.read.MDTagging.class - [JAR]
├─ org.bdgenomics.adam.ds.read.MarkDuplicates.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ParquetUnboundAlignmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ParquetUnboundReadDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.QualityScoreBin.class - [JAR]
├─ org.bdgenomics.adam.ds.read.RDDBoundAlignmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.RDDBoundReadDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ReadArray.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ReadArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ReadDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ReferencePositionPair.class - [JAR]
├─ org.bdgenomics.adam.ds.read.ReferencePositionPairSerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.read.RepairPartitions.class - [JAR]
├─ org.bdgenomics.adam.ds.read.SAMInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.read.SAMIteratorConverter.class - [JAR]
├─ org.bdgenomics.adam.ds.read.SingleReadBucket.class - [JAR]
├─ org.bdgenomics.adam.ds.read.SingleReadBucketSerializer.class - [JAR]
org.bdgenomics.adam.ds.feature
├─ org.bdgenomics.adam.ds.feature.BEDInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.BEDOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.BEDParser.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.CoverageArray.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.CoverageArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.CoverageDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.DatasetBoundCoverageDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.DatasetBoundFeatureDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.FeatureArray.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.FeatureArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.FeatureDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.FeatureOrdering.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.FeatureParser.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.Features.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GFF3HeaderWriter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GFF3InFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GFF3OutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GFF3Parser.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GTFInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GTFOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.GTFParser.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.IntervalListParser.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.NarrowPeakInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.NarrowPeakOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.NarrowPeakParser.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.ParquetUnboundCoverageDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.ParquetUnboundFeatureDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.RDDBoundCoverageDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.feature.RDDBoundFeatureDataset.class - [JAR]
org.bdgenomics.adam.ds.sequence
├─ org.bdgenomics.adam.ds.sequence.DatasetBoundSequenceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.DatasetBoundSliceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.FASTAInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.FlankSlices.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.ParquetUnboundSequenceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.ParquetUnboundSliceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.RDDBoundSequenceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.RDDBoundSliceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.SequenceArray.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.SequenceArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.SequenceDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.SliceArray.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.SliceArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.sequence.SliceDataset.class - [JAR]
org.bdgenomics.adam.serialization
├─ org.bdgenomics.adam.serialization.ADAMKryoRegistrator.class - [JAR]
├─ org.bdgenomics.adam.serialization.AvroSerializer.class - [JAR]
├─ org.bdgenomics.adam.serialization.InputStreamWithDecoder.class - [JAR]
├─ org.bdgenomics.adam.serialization.WritableSerializer.class - [JAR]
org.bdgenomics.adam.algorithms.consensus
├─ org.bdgenomics.adam.algorithms.consensus.Consensus.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGenerator.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGeneratorFromKnowns.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGeneratorFromReads.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGeneratorFromSmithWaterman.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.NormalizationUtils.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.UnionConsensusGenerator.class - [JAR]
org.bdgenomics.adam.io
├─ org.bdgenomics.adam.io.FastqInputFormat.class - [JAR]
├─ org.bdgenomics.adam.io.FastqRecordReader.class - [JAR]
├─ org.bdgenomics.adam.io.InterleavedFastqInputFormat.class - [JAR]
├─ org.bdgenomics.adam.io.ResettableCompressedSplitLineReader.class - [JAR]
├─ org.bdgenomics.adam.io.SingleFastqInputFormat.class - [JAR]
org.bdgenomics.adam.ds.fragment
├─ org.bdgenomics.adam.ds.fragment.DatasetBoundFragmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.FragmentArray.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.FragmentArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.FragmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.InterleavedFASTQInFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.ParquetUnboundFragmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.RDDBoundFragmentDataset.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.Tab5InFormatter.class - [JAR]
├─ org.bdgenomics.adam.ds.fragment.Tab6InFormatter.class - [JAR]
org.bdgenomics.adam.sql
├─ org.bdgenomics.adam.sql.Alignment.class - [JAR]
├─ org.bdgenomics.adam.sql.Dbxref.class - [JAR]
├─ org.bdgenomics.adam.sql.Feature.class - [JAR]
├─ org.bdgenomics.adam.sql.Fragment.class - [JAR]
├─ org.bdgenomics.adam.sql.Genotype.class - [JAR]
├─ org.bdgenomics.adam.sql.OntologyTerm.class - [JAR]
├─ org.bdgenomics.adam.sql.ProcessingStep.class - [JAR]
├─ org.bdgenomics.adam.sql.Read.class - [JAR]
├─ org.bdgenomics.adam.sql.Reference.class - [JAR]
├─ org.bdgenomics.adam.sql.Sequence.class - [JAR]
├─ org.bdgenomics.adam.sql.Slice.class - [JAR]
├─ org.bdgenomics.adam.sql.TranscriptEffect.class - [JAR]
├─ org.bdgenomics.adam.sql.Variant.class - [JAR]
├─ org.bdgenomics.adam.sql.VariantAnnotation.class - [JAR]
├─ org.bdgenomics.adam.sql.VariantCallingAnnotations.class - [JAR]
├─ org.bdgenomics.adam.sql.VariantContext.class - [JAR]
