View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window sequila_2.11-0.5.20.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.biodatageeks.sequila.rangejoins.optimizer
├─ org.biodatageeks.sequila.rangejoins.optimizer.JoinOptimizer.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.optimizer.JoinOptimizerChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.optimizer.RangeJoinMethod.class - [JAR]
org.biodatageeks.sequila.datasources.VCF
├─ org.biodatageeks.sequila.datasources.VCF.VCFDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.VCF.VCFRelation.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.genApp
├─ org.biodatageeks.sequila.rangejoins.methods.genApp.IntervalTreeChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.genApp.IntervalTreeJoinChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.genApp.IntervalTreeJoinChromosomeImpl.class - [JAR]
org.biodatageeks.sequila.datasources.FASTQ
├─ org.biodatageeks.sequila.datasources.FASTQ.FASTQDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.FASTQ.SequencedFragmentRelation.class - [JAR]
org.biodatageeks.sequila.apps
├─ org.biodatageeks.sequila.apps.Benchmark.class - [JAR]
├─ org.biodatageeks.sequila.apps.CovRun.class - [JAR]
├─ org.biodatageeks.sequila.apps.DepthOfCoverage.class - [JAR]
├─ org.biodatageeks.sequila.apps.FeatureCounts.class - [JAR]
├─ org.biodatageeks.sequila.apps.PileupApp.class - [JAR]
org.biodatageeks.sequila.datasources
├─ org.biodatageeks.sequila.datasources.InputDataType.class - [JAR]
org.biodatageeks.sequila.datasources.BAM
├─ org.biodatageeks.sequila.datasources.BAM.BAMDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.BDGAlignFileReaderWriter.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.BDGAlignmentRelation.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.CRAMDataSource.class - [JAR]
org.biodatageeks.sequila.inputformats
├─ org.biodatageeks.sequila.inputformats.BDGAlignInputFormat.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.transformations
├─ org.biodatageeks.sequila.rangejoins.methods.transformations.RangeMethods.class - [JAR]
org.biodatageeks.sequila.pileup.serializers
├─ org.biodatageeks.sequila.pileup.serializers.CustomKryoRegistrator.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.IntMapSerializer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.LinkedHashSetSerializer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.LongMapSerializer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.PileupProjection.class - [JAR]
org.apache.spark.sql.hive.thriftserver
├─ org.apache.spark.sql.hive.thriftserver.HiveThriftServer2Seq.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.ReflectedCompositeService.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.SequilaThriftServer.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.SparkExecuteStatementOperation.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.SparkExecuteStatementOperationSeq.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.SparkSQLCLIServiceSeq.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.SparkSQLSessionManagerSeq.class - [JAR]
org.seqdoop.hadoop_bam
├─ org.seqdoop.hadoop_bam.BAMBDGInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMBDGRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMBDGSplitGuesser.class - [JAR]
├─ org.seqdoop.hadoop_bam.CRAMBDGInputFormat.class - [JAR]
org.apache.spark.sql.hive.thriftserver.ui
├─ org.apache.spark.sql.hive.thriftserver.ui.ThriftServerPageSeq.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.ui.ThriftServerSessionPageSeq.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.ui.ThriftServerTab.class - [JAR]
├─ org.apache.spark.sql.hive.thriftserver.ui.ThriftServerTabSeq.class - [JAR]
org.biodatageeks.sequila.R
├─ org.biodatageeks.sequila.R.SequilaR.class - [JAR]
org.apache.spark.sql.hive.thriftserver.server
├─ org.apache.spark.sql.hive.thriftserver.server.SparkSQLOperationManagerSeq.class - [JAR]
org.biodatageeks.sequila.pileup.converters
├─ org.biodatageeks.sequila.pileup.converters.DelContext.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.DelTransfer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.PileupConverter.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.PileupStringUtils.class - [JAR]
org.biodatageeks.sequila.utils.schema
├─ org.biodatageeks.sequila.utils.schema.CSVToJsonTags.class - [JAR]
org.biodatageeks.sequila.pileup.conf
├─ org.biodatageeks.sequila.pileup.conf.Conf.class - [JAR]
├─ org.biodatageeks.sequila.pileup.conf.QualityConstants.class - [JAR]
org.biodatageeks.sequila.pileup.udfs
├─ org.biodatageeks.sequila.pileup.udfs.AltFunctions.class - [JAR]
├─ org.biodatageeks.sequila.pileup.udfs.CoverageFunctions.class - [JAR]
├─ org.biodatageeks.sequila.pileup.udfs.QualityFunctions.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.IntervalTree
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.InternalRowPacker.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeHTS.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeHTSChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeJoinOptimChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeJoinOptimChromosomeImpl.class - [JAR]
org.biodatageeks.sequila.utils
├─ org.biodatageeks.sequila.utils.Columns.class - [JAR]
├─ org.biodatageeks.sequila.utils.DataQualityFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.FastMath.class - [JAR]
├─ org.biodatageeks.sequila.utils.FastSerializer.class - [JAR]
├─ org.biodatageeks.sequila.utils.InternalParams.class - [JAR]
├─ org.biodatageeks.sequila.utils.Interval.class - [JAR]
├─ org.biodatageeks.sequila.utils.ScalaFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.SequilaRegister.class - [JAR]
├─ org.biodatageeks.sequila.utils.TableFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.UDFRegister.class - [JAR]
org.biodatageeks.sequila.pileup.timers
├─ org.biodatageeks.sequila.pileup.timers.PileupTimers.class - [JAR]
org.apache.spark.sql.catalyst.analysis
├─ org.apache.spark.sql.catalyst.analysis.SeQuiLaAnalyzer.class - [JAR]
org.biodatageeks.sequila.pileup
├─ org.biodatageeks.sequila.pileup.MDOperator.class - [JAR]
├─ org.biodatageeks.sequila.pileup.MDTagParser.class - [JAR]
├─ org.biodatageeks.sequila.pileup.Pileup.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupMethods.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupPlan.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupRunner.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupStrategy.class - [JAR]
org.biodatageeks.sequila.utvf
├─ org.biodatageeks.sequila.utvf.GIntervalRow.class - [JAR]
├─ org.biodatageeks.sequila.utvf.GenomicIntervalPlan.class - [JAR]
├─ org.biodatageeks.sequila.utvf.GenomicIntervalStrategy.class - [JAR]
org.biodatageeks.sequila.datasources.ADAM
├─ org.biodatageeks.sequila.datasources.ADAM.ADAMDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.ADAM.ADAMRelation.class - [JAR]
org.biodatageeks.sequila.pileup.model
├─ org.biodatageeks.sequila.pileup.model.AggregateRDD.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.AggregateRDDOperations.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.AlignmentsRDD.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.AlignmentsRDDOperations.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.Alts.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.BlockProperties.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.CigarDerivedConf.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ContigAggregate.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ExtendedReads.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.GenericPileupRecord.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.InDelPositions.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.PileupRecord.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.QualityCache.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.Quals.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ReadOperations.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ReadQualSummary.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.Reference.class - [JAR]
scala.collection.mutable
├─ scala.collection.mutable.IntMap.class - [JAR]
├─ scala.collection.mutable.ReusableBuilder.class - [JAR]
org.biodatageeks.sequila.rangejoins.common.performance.timers
├─ org.biodatageeks.sequila.rangejoins.common.performance.timers.IntervalTreeTimer.class - [JAR]
org.biodatageeks.sequila.rangejoins.common
├─ org.biodatageeks.sequila.rangejoins.common.ExtractRangeJoinKeys.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.common.ExtractRangeJoinKeysWithEquality.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.common.Main.class - [JAR]
org.biodatageeks.sequila.rangejoins.IntervalTree
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.Interval.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinOptim.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinOptimImpl.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinStrategyOptim.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalWithRow.class - [JAR]
org.biodatageeks.sequila.coverage
├─ org.biodatageeks.sequila.coverage.AbstractCovRecord.class - [JAR]
├─ org.biodatageeks.sequila.coverage.BDGCoveragePlan.class - [JAR]
├─ org.biodatageeks.sequila.coverage.ContigRange.class - [JAR]
├─ org.biodatageeks.sequila.coverage.CovRecord.class - [JAR]
├─ org.biodatageeks.sequila.coverage.CovRecordWindow.class - [JAR]
├─ org.biodatageeks.sequila.coverage.CovUpdate.class - [JAR]
├─ org.biodatageeks.sequila.coverage.CoverageAccumulatorV2.class - [JAR]
├─ org.biodatageeks.sequila.coverage.CoverageMethodsMos.class - [JAR]
├─ org.biodatageeks.sequila.coverage.CoverageStrategy.class - [JAR]
├─ org.biodatageeks.sequila.coverage.RightCovEdge.class - [JAR]
├─ org.biodatageeks.sequila.coverage.UpdateStruct.class - [JAR]
org.biodatageeks.formats
├─ org.biodatageeks.formats.Alignment.class - [JAR]
├─ org.biodatageeks.formats.BrowserExtensibleData.class - [JAR]
├─ org.biodatageeks.formats.Interval.class - [JAR]
├─ org.biodatageeks.formats.SequencedFragment.class - [JAR]
org.apache.spark.sql
├─ org.apache.spark.sql.BDGCoverage.class - [JAR]
├─ org.apache.spark.sql.GenomicInterval.class - [JAR]
├─ org.apache.spark.sql.PileupTemplate.class - [JAR]
├─ org.apache.spark.sql.ResolveTableValuedFunctionsSeq.class - [JAR]
├─ org.apache.spark.sql.SequilaSession.class - [JAR]
├─ org.apache.spark.sql.SequilaSessionState.class - [JAR]
├─ org.apache.spark.sql.UTVFRegister.class - [JAR]
org.biodatageeks.sequila.rangejoins.common.metrics
├─ org.biodatageeks.sequila.rangejoins.common.metrics.MetricsCollector.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.common.metrics.TestMetaRecord.class - [JAR]
org.biodatageeks.sequila.rangejoins.genApp
├─ org.biodatageeks.sequila.rangejoins.genApp.Interval.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTree.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTreeJoin.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTreeJoinImpl.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTreeJoinStrategy.class - [JAR]
org.biodatageeks.sequila.outputformats
├─ org.biodatageeks.sequila.outputformats.BAMOutputFormat.class - [JAR]
org.biodatageeks.sequila.datasources.BED
├─ org.biodatageeks.sequila.datasources.BED.BEDDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BED.BEDRelation.class - [JAR]
org.apache.spark.sql.execution.datasources
├─ org.apache.spark.sql.execution.datasources.SequilaDataSourceStrategy.class - [JAR]
htsjdk.samtools
├─ htsjdk.samtools.BAMBDGRecord.class - [JAR]
├─ htsjdk.samtools.SAMRecordHelper.class - [JAR]
org.biodatageeks.sequila.pileup.broadcast
├─ org.biodatageeks.sequila.pileup.broadcast.Correction.class - [JAR]
├─ org.biodatageeks.sequila.pileup.broadcast.FullCorrections.class - [JAR]
├─ org.biodatageeks.sequila.pileup.broadcast.PileupAccumulator.class - [JAR]
├─ org.biodatageeks.sequila.pileup.broadcast.PileupUpdate.class - [JAR]
├─ org.biodatageeks.sequila.pileup.broadcast.Range.class - [JAR]
├─ org.biodatageeks.sequila.pileup.broadcast.Shrink.class - [JAR]
├─ org.biodatageeks.sequila.pileup.broadcast.Tail.class - [JAR]
