View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window sequila_2.12-1.1.1.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.biodatageeks.sequila.datasources.VCF
├─ org.biodatageeks.sequila.datasources.VCF.VCFDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.VCF.VCFRelation.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.genApp
├─ org.biodatageeks.sequila.rangejoins.methods.genApp.IntervalTreeChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.genApp.IntervalTreeJoinChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.genApp.IntervalTreeJoinChromosomeImpl.class - [JAR]
org.biodatageeks.sequila.inputformats
├─ org.biodatageeks.sequila.inputformats.BDGAlignInputFormat.class - [JAR]
com.intel.gkl
├─ com.intel.gkl.IntelGKLUtils.class - [JAR]
├─ com.intel.gkl.NativeLibraryLoader.class - [JAR]
org.seqdoop.hadoop_bam
├─ org.seqdoop.hadoop_bam.AnySAMInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.AnySAMOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMBDGInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMBDGRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMBDGSplitGuesser.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.BAMSplitGuesser.class - [JAR]
├─ org.seqdoop.hadoop_bam.BCFRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.BCFRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.BCFSplitGuesser.class - [JAR]
├─ org.seqdoop.hadoop_bam.BCFStoppableOutputStream.class - [JAR]
├─ org.seqdoop.hadoop_bam.BGZFLimitingStream.class - [JAR]
├─ org.seqdoop.hadoop_bam.BaseSplitGuesser.class - [JAR]
├─ org.seqdoop.hadoop_bam.CRAMBDGInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.CRAMInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.CRAMOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.CRAMRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.CRAMRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.FastaInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.FastqInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.FastqOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.FileVirtualSplit.class - [JAR]
├─ org.seqdoop.hadoop_bam.FormatConstants.class - [JAR]
├─ org.seqdoop.hadoop_bam.FormatException.class - [JAR]
├─ org.seqdoop.hadoop_bam.HeaderSettableVCFCodec.class - [JAR]
├─ org.seqdoop.hadoop_bam.IntelGKLAccessor.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringBAMOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringBAMRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringBCFRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringCRAMOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringCRAMRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringSAMRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringVCFOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.KeyIgnoringVCFRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.LazyBAMRecord.class - [JAR]
├─ org.seqdoop.hadoop_bam.LazyBAMRecordFactory.class - [JAR]
├─ org.seqdoop.hadoop_bam.LazyBCFGenotypesContext.class - [JAR]
├─ org.seqdoop.hadoop_bam.LazyParsingGenotypesContext.class - [JAR]
├─ org.seqdoop.hadoop_bam.LazyVCFGenotypesContext.class - [JAR]
├─ org.seqdoop.hadoop_bam.LineReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.QseqInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.QseqOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.ReferenceFragment.class - [JAR]
├─ org.seqdoop.hadoop_bam.SAMFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.SAMInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.SAMRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.SAMRecordWritable.class - [JAR]
├─ org.seqdoop.hadoop_bam.SAMRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.SequencedFragment.class - [JAR]
├─ org.seqdoop.hadoop_bam.SplittingBAMIndex.class - [JAR]
├─ org.seqdoop.hadoop_bam.SplittingBAMIndexer.class - [JAR]
├─ org.seqdoop.hadoop_bam.StoppableOutputStream.class - [JAR]
├─ org.seqdoop.hadoop_bam.VCFFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.VCFInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.VCFOutputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.VCFRecordReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.VCFRecordWriter.class - [JAR]
├─ org.seqdoop.hadoop_bam.VariantContextCodec.class - [JAR]
├─ org.seqdoop.hadoop_bam.VariantContextWithHeader.class - [JAR]
├─ org.seqdoop.hadoop_bam.VariantContextWritable.class - [JAR]
├─ org.seqdoop.hadoop_bam.WorkaroundingStream.class - [JAR]
com.intel.gkl.pairhmm
├─ com.intel.gkl.pairhmm.IntelPairHmm.class - [JAR]
├─ com.intel.gkl.pairhmm.IntelPairHmmFpga.class - [JAR]
├─ com.intel.gkl.pairhmm.IntelPairHmmOMP.class - [JAR]
org.biodatageeks.sequila.R
├─ org.biodatageeks.sequila.R.SequilaR.class - [JAR]
org.biodatageeks.sequila.pileup.converters.sequila
├─ org.biodatageeks.sequila.pileup.converters.sequila.SequilaConverter.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.sequila.SequilaSchema.class - [JAR]
org.seqdoop.hadoop_bam.util
├─ org.seqdoop.hadoop_bam.util.BGZFBlockIndex.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFBlockIndexer.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFCodec.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFCompressionOutputStream.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFEnhancedGzipCodec.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFSplitCompressionInputStream.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFSplitFileInputFormat.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.BGZFSplitGuesser.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.ConfHelper.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.DataInputWrapper.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.DataOutputWrapper.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.GetSortedBAMHeader.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.IntervalUtil.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.MurmurHash3.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.NIOFileUtil.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.SAMFileMerger.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.SAMHeaderReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.SAMOutputPreparer.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.VCFFileMerger.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.VCFHeaderReader.class - [JAR]
├─ org.seqdoop.hadoop_bam.util.WrapSeekable.class - [JAR]
org.biodatageeks.sequila.pileup.partitioning
├─ org.biodatageeks.sequila.pileup.partitioning.LowerPartitionBoundAlignmentRecord.class - [JAR]
├─ org.biodatageeks.sequila.pileup.partitioning.PartitionBounds.class - [JAR]
├─ org.biodatageeks.sequila.pileup.partitioning.PartitionUtils.class - [JAR]
├─ org.biodatageeks.sequila.pileup.partitioning.RangePartitionCoalescer.class - [JAR]
org.biodatageeks.sequila.pileup.conf
├─ org.biodatageeks.sequila.pileup.conf.Conf.class - [JAR]
├─ org.biodatageeks.sequila.pileup.conf.QualityConstants.class - [JAR]
org.biodatageeks.sequila.pileup.udfs
├─ org.biodatageeks.sequila.pileup.udfs.AltFunctions.class - [JAR]
├─ org.biodatageeks.sequila.pileup.udfs.CoverageFunctions.class - [JAR]
├─ org.biodatageeks.sequila.pileup.udfs.QualityFunctions.class - [JAR]
org.biodatageeks.sequila.utils
├─ org.biodatageeks.sequila.utils.AlignmentConstants.class - [JAR]
├─ org.biodatageeks.sequila.utils.Columns.class - [JAR]
├─ org.biodatageeks.sequila.utils.DataQualityFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.FastMath.class - [JAR]
├─ org.biodatageeks.sequila.utils.FastSerializer.class - [JAR]
├─ org.biodatageeks.sequila.utils.FileFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.InternalParams.class - [JAR]
├─ org.biodatageeks.sequila.utils.Interval.class - [JAR]
├─ org.biodatageeks.sequila.utils.ScalaFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.TableFuncs.class - [JAR]
├─ org.biodatageeks.sequila.utils.UDFRegister.class - [JAR]
org.apache.spark.sql.catalyst.analysis
├─ org.apache.spark.sql.catalyst.analysis.SeQuiLaAnalyzer.class - [JAR]
org.biodatageeks.sequila.utvf
├─ org.biodatageeks.sequila.utvf.GIntervalRow.class - [JAR]
├─ org.biodatageeks.sequila.utvf.GenomicIntervalPlan.class - [JAR]
├─ org.biodatageeks.sequila.utvf.GenomicIntervalStrategy.class - [JAR]
org.biodatageeks.sequila.pileup.model
├─ org.biodatageeks.sequila.pileup.model.AggregateRDD.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.AggregateRDDOperations.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.AlignmentsRDD.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.AlignmentsRDDOperations.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.Alts.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.BlockProperties.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.CigarDerivedConf.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ContigAggregate.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ExtendedReads.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.GenericPileupRecord.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.InDelPositions.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.PileupRecord.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ReadOperations.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.ReadSummary.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.Reference.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.TruncRead.class - [JAR]
├─ org.biodatageeks.sequila.pileup.model.VectorizedPileup.class - [JAR]
org.disq_bio.disq.impl.formats.bam
├─ org.disq_bio.disq.impl.formats.bam.BamRecordGuesser.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bam.BamRecordGuesserChecker.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bam.BamSink.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bam.BamSource.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bam.HeaderlessBamOutputFormat.class - [JAR]
org.biodatageeks.sequila.rangejoins.common
├─ org.biodatageeks.sequila.rangejoins.common.ExtractRangeJoinKeys.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.common.ExtractRangeJoinKeysWithEquality.class - [JAR]
org.apache.spark.sql
├─ org.apache.spark.sql.Coverage.class - [JAR]
├─ org.apache.spark.sql.GenomicInterval.class - [JAR]
├─ org.apache.spark.sql.Pileup.class - [JAR]
├─ org.apache.spark.sql.PileupTemplate.class - [JAR]
├─ org.apache.spark.sql.ResolveTableValuedFunctionsSeq.class - [JAR]
├─ org.apache.spark.sql.SequilaSession.class - [JAR]
├─ org.apache.spark.sql.SequilaSessionState.class - [JAR]
org.biodatageeks.sequila.rangejoins.genApp
├─ org.biodatageeks.sequila.rangejoins.genApp.Interval.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTree.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTreeJoin.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTreeJoinImpl.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.genApp.IntervalTreeJoinStrategy.class - [JAR]
org.disq_bio.disq.impl.formats.bgzf
├─ org.disq_bio.disq.impl.formats.bgzf.BGZFCodec.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bgzf.BGZFCompressionOutputStream.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bgzf.BGZFEnhancedGzipCodec.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bgzf.BGZFSplitCompressionInputStream.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bgzf.BgzfBlockGuesser.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bgzf.BgzfBlockSource.class - [JAR]
├─ org.disq_bio.disq.impl.formats.bgzf.TerminatorlessBlockCompressedOutputStream.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.base
├─ org.biodatageeks.sequila.rangejoins.methods.base.BaseIntervalHolder.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.base.BaseNode.class - [JAR]
org.biodatageeks.sequila.outputformats
├─ org.biodatageeks.sequila.outputformats.BAMOutputFormat.class - [JAR]
org.biodatageeks.sequila.rangejoins.optimizer
├─ org.biodatageeks.sequila.rangejoins.optimizer.JoinOptimizer.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.optimizer.JoinOptimizerChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.optimizer.RangeJoinMethod.class - [JAR]
org.disq_bio.disq
├─ org.disq_bio.disq.BaiWriteOption.class - [JAR]
├─ org.disq_bio.disq.CraiWriteOption.class - [JAR]
├─ org.disq_bio.disq.FileCardinalityWriteOption.class - [JAR]
├─ org.disq_bio.disq.HtsjdkReadsRdd.class - [JAR]
├─ org.disq_bio.disq.HtsjdkReadsRddStorage.class - [JAR]
├─ org.disq_bio.disq.HtsjdkReadsTraversalParameters.class - [JAR]
├─ org.disq_bio.disq.HtsjdkVariantsRdd.class - [JAR]
├─ org.disq_bio.disq.HtsjdkVariantsRddStorage.class - [JAR]
├─ org.disq_bio.disq.ReadsFormatWriteOption.class - [JAR]
├─ org.disq_bio.disq.SbiWriteOption.class - [JAR]
├─ org.disq_bio.disq.TabixIndexWriteOption.class - [JAR]
├─ org.disq_bio.disq.TempPartsDirectoryWriteOption.class - [JAR]
├─ org.disq_bio.disq.VariantsFormatWriteOption.class - [JAR]
├─ org.disq_bio.disq.WriteOption.class - [JAR]
org.disq_bio.disq.serializer
├─ org.disq_bio.disq.serializer.DisqKryoRegistrator.class - [JAR]
org.biodatageeks.sequila.datasources.FASTQ
├─ org.biodatageeks.sequila.datasources.FASTQ.FASTQDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.FASTQ.SequencedFragmentRelation.class - [JAR]
org.disq_bio.disq.impl.file
├─ org.disq_bio.disq.impl.file.BaiMerger.class - [JAR]
├─ org.disq_bio.disq.impl.file.CraiMerger.class - [JAR]
├─ org.disq_bio.disq.impl.file.FileSplitInputFormat.class - [JAR]
├─ org.disq_bio.disq.impl.file.FileSystemWrapper.class - [JAR]
├─ org.disq_bio.disq.impl.file.HadoopFileSystemWrapper.class - [JAR]
├─ org.disq_bio.disq.impl.file.HiddenFileFilter.class - [JAR]
├─ org.disq_bio.disq.impl.file.IndexFileMerger.class - [JAR]
├─ org.disq_bio.disq.impl.file.Merger.class - [JAR]
├─ org.disq_bio.disq.impl.file.NioFileSystemWrapper.class - [JAR]
├─ org.disq_bio.disq.impl.file.PathChunk.class - [JAR]
├─ org.disq_bio.disq.impl.file.PathSplit.class - [JAR]
├─ org.disq_bio.disq.impl.file.PathSplitSource.class - [JAR]
├─ org.disq_bio.disq.impl.file.SbiMerger.class - [JAR]
├─ org.disq_bio.disq.impl.file.SeekableByteChannelPrefetcher.class - [JAR]
├─ org.disq_bio.disq.impl.file.TbiMerger.class - [JAR]
org.biodatageeks.sequila.pileup.converters.gatk
├─ org.biodatageeks.sequila.pileup.converters.gatk.GatkConverter.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.gatk.GatkSchema.class - [JAR]
com.intel.gkl.compression
├─ com.intel.gkl.compression.IntelDeflater.class - [JAR]
├─ com.intel.gkl.compression.IntelDeflaterFactory.class - [JAR]
├─ com.intel.gkl.compression.IntelInflater.class - [JAR]
├─ com.intel.gkl.compression.IntelInflaterFactory.class - [JAR]
org.biodatageeks.sequila.apps
├─ org.biodatageeks.sequila.apps.Benchmark.class - [JAR]
├─ org.biodatageeks.sequila.apps.CovRun.class - [JAR]
├─ org.biodatageeks.sequila.apps.DepthOfCoverage.class - [JAR]
├─ org.biodatageeks.sequila.apps.FeatureCounts.class - [JAR]
├─ org.biodatageeks.sequila.apps.PileupApp.class - [JAR]
├─ org.biodatageeks.sequila.apps.PileupComparison.class - [JAR]
├─ org.biodatageeks.sequila.apps.SequilaApp.class - [JAR]
com.intel.gkl.smithwaterman
├─ com.intel.gkl.smithwaterman.IntelSmithWaterman.class - [JAR]
org.biodatageeks.sequila.datasources
├─ org.biodatageeks.sequila.datasources.InputDataType.class - [JAR]
org.biodatageeks.sequila.datasources.BAM
├─ org.biodatageeks.sequila.datasources.BAM.BAMDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.BAMFileReader.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.BAMTableReader.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.BDGAlignFileReaderWriter.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.BDGAlignmentRelation.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.CRAMDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BAM.Interval.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.transformations
├─ org.biodatageeks.sequila.rangejoins.methods.transformations.RangeMethods.class - [JAR]
org.biodatageeks.sequila.pileup.serializers
├─ org.biodatageeks.sequila.pileup.serializers.CustomKryoRegistrator.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.IntMapSerializer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.LinkedHashSetSerializer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.LongMapSerializer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.OrcProjection.class - [JAR]
├─ org.biodatageeks.sequila.pileup.serializers.PileupProjection.class - [JAR]
org.disq_bio.disq.impl.formats
├─ org.disq_bio.disq.impl.formats.AutocloseIteratorWrapper.class - [JAR]
├─ org.disq_bio.disq.impl.formats.BoundedTraversalUtil.class - [JAR]
├─ org.disq_bio.disq.impl.formats.SerializableHadoopConfiguration.class - [JAR]
org.biodatageeks.sequila.utils.schema
├─ org.biodatageeks.sequila.utils.schema.CSVToJsonTags.class - [JAR]
org.biodatageeks.sequila.rangejoins.methods.IntervalTree
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.InternalRowPacker.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalHolderChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeJoinOptimChromosome.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeJoinOptimChromosomeImpl.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.methods.IntervalTree.IntervalTreeRedBlack.class - [JAR]
org.biodatageeks.sequila.pileup
├─ org.biodatageeks.sequila.pileup.Contig.class - [JAR]
├─ org.biodatageeks.sequila.pileup.MDOperator.class - [JAR]
├─ org.biodatageeks.sequila.pileup.MDTagParser.class - [JAR]
├─ org.biodatageeks.sequila.pileup.Pileup.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupDebugger.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupMethods.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupPlan.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupReader.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupRunner.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupStrategy.class - [JAR]
├─ org.biodatageeks.sequila.pileup.PileupWriter.class - [JAR]
org.biodatageeks.sequila.datasources.ADAM
├─ org.biodatageeks.sequila.datasources.ADAM.ADAMDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.ADAM.ADAMRelation.class - [JAR]
org.disq_bio.disq.impl.formats.cram
├─ org.disq_bio.disq.impl.formats.cram.CramOutputFormat.class - [JAR]
├─ org.disq_bio.disq.impl.formats.cram.CramReferenceSourceBuilder.class - [JAR]
├─ org.disq_bio.disq.impl.formats.cram.CramSink.class - [JAR]
├─ org.disq_bio.disq.impl.formats.cram.CramSource.class - [JAR]
scala.collection.mutable
├─ scala.collection.mutable.IntMap.class - [JAR]
├─ scala.collection.mutable.ReusableBuilder.class - [JAR]
org.disq_bio.disq.impl.formats.vcf
├─ org.disq_bio.disq.impl.formats.vcf.AbstractVcfSink.class - [JAR]
├─ org.disq_bio.disq.impl.formats.vcf.HeaderlessVcfOutputFormat.class - [JAR]
├─ org.disq_bio.disq.impl.formats.vcf.VcfFormat.class - [JAR]
├─ org.disq_bio.disq.impl.formats.vcf.VcfOutputFormat.class - [JAR]
├─ org.disq_bio.disq.impl.formats.vcf.VcfSink.class - [JAR]
├─ org.disq_bio.disq.impl.formats.vcf.VcfSinkMultiple.class - [JAR]
├─ org.disq_bio.disq.impl.formats.vcf.VcfSource.class - [JAR]
org.biodatageeks.sequila.rangejoins.IntervalTree
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.Interval.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinOptim.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinOptimImpl.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinStrategyOptim.class - [JAR]
├─ org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalWithRow.class - [JAR]
org.biodatageeks.formats
├─ org.biodatageeks.formats.Alignment.class - [JAR]
├─ org.biodatageeks.formats.BrowserExtensibleData.class - [JAR]
├─ org.biodatageeks.formats.Interval.class - [JAR]
├─ org.biodatageeks.formats.SequencedFragment.class - [JAR]
org.disq_bio.disq.impl.formats.sam
├─ org.disq_bio.disq.impl.formats.sam.AbstractBinarySamSource.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.AbstractSamSink.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.AbstractSamSource.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.AnySamOutputFormat.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.AnySamSinkMultiple.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.SamFormat.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.SamSink.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.SamSource.class - [JAR]
├─ org.disq_bio.disq.impl.formats.sam.TraversalOverlapDetector.class - [JAR]
org.biodatageeks.sequila.pileup.converters.samtools
├─ org.biodatageeks.sequila.pileup.converters.samtools.DelContext.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.samtools.DelTransfer.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.samtools.PileupStringUtils.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.samtools.SamtoolsConverter.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.samtools.SamtoolsSchema.class - [JAR]
org.biodatageeks.sequila.pileup.converters.common
├─ org.biodatageeks.sequila.pileup.converters.common.CommonPileupFormat.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.common.PileupConverter.class - [JAR]
├─ org.biodatageeks.sequila.pileup.converters.common.PileupFormats.class - [JAR]
org.biodatageeks.sequila.datasources.BED
├─ org.biodatageeks.sequila.datasources.BED.BEDDataSource.class - [JAR]
├─ org.biodatageeks.sequila.datasources.BED.BEDRelation.class - [JAR]
org.disq_bio.disq.impl.formats.tribble
├─ org.disq_bio.disq.impl.formats.tribble.TribbleIndexIntervalFilteringTextInputFormat.class - [JAR]
org.apache.spark.sql.execution.datasources
├─ org.apache.spark.sql.execution.datasources.SequilaDataSourceStrategy.class - [JAR]
htsjdk.samtools
├─ htsjdk.samtools.BAMBDGRecord.class - [JAR]
├─ htsjdk.samtools.LinearBAMIndex.class - [JAR]
├─ htsjdk.samtools.SAMRecordHelper.class - [JAR]
