View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window forester-1.039.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.forester.test.examples
├─ org.forester.test.examples.Example1.class - [JAR]
├─ org.forester.test.examples.Example2.class - [JAR]
├─ org.forester.test.examples.Example3.class - [JAR]
├─ org.forester.test.examples.Example4.class - [JAR]
├─ org.forester.test.examples.Example5.class - [JAR]
org.forester.test
├─ org.forester.test.Test.class - [JAR]
org.forester.phylogeny
├─ org.forester.phylogeny.Phylogeny.class - [JAR]
├─ org.forester.phylogeny.PhylogenyBranch.class - [JAR]
├─ org.forester.phylogeny.PhylogenyMethods.class - [JAR]
├─ org.forester.phylogeny.PhylogenyNode.class - [JAR]
org.forester.phylogeny.factories
├─ org.forester.phylogeny.factories.ParserBasedPhylogenyFactory.class - [JAR]
├─ org.forester.phylogeny.factories.PhylogenyFactory.class - [JAR]
org.forester.io.parsers.tol
├─ org.forester.io.parsers.tol.TolParser.class - [JAR]
├─ org.forester.io.parsers.tol.TolXmlHandler.class - [JAR]
├─ org.forester.io.parsers.tol.TolXmlMapping.class - [JAR]
org.forester.archaeopteryx.phylogeny.data
├─ org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture.class - [JAR]
├─ org.forester.archaeopteryx.phylogeny.data.RenderableMsaSequence.class - [JAR]
├─ org.forester.archaeopteryx.phylogeny.data.RenderablePhylogenyData.class - [JAR]
├─ org.forester.archaeopteryx.phylogeny.data.RenderableVector.class - [JAR]
org.forester.sequence
├─ org.forester.sequence.BasicSequence.class - [JAR]
├─ org.forester.sequence.MolecularSequence.class - [JAR]
org.forester.phylogeny.iterators
├─ org.forester.phylogeny.iterators.ExternalForwardIterator.class - [JAR]
├─ org.forester.phylogeny.iterators.LevelOrderTreeIterator.class - [JAR]
├─ org.forester.phylogeny.iterators.PhylogenyNodeIterator.class - [JAR]
├─ org.forester.phylogeny.iterators.PostOrderStackObject.class - [JAR]
├─ org.forester.phylogeny.iterators.PostorderTreeIterator.class - [JAR]
├─ org.forester.phylogeny.iterators.PreorderTreeIterator.class - [JAR]
org.forester.protein
├─ org.forester.protein.BasicDomain.class - [JAR]
├─ org.forester.protein.BasicProtein.class - [JAR]
├─ org.forester.protein.BinaryDomainCombination.class - [JAR]
├─ org.forester.protein.Domain.class - [JAR]
├─ org.forester.protein.Protein.class - [JAR]
├─ org.forester.protein.ProteinId.class - [JAR]
org.forester.sdi
├─ org.forester.sdi.GSDI.class - [JAR]
├─ org.forester.sdi.GSDII.class - [JAR]
├─ org.forester.sdi.GSDIR.class - [JAR]
├─ org.forester.sdi.GSDIsummaryResult.class - [JAR]
├─ org.forester.sdi.NodesLinkingResult.class - [JAR]
├─ org.forester.sdi.SDI.class - [JAR]
├─ org.forester.sdi.SDIException.class - [JAR]
├─ org.forester.sdi.SDIR.class - [JAR]
├─ org.forester.sdi.SDIutil.class - [JAR]
├─ org.forester.sdi.TestGSDI.class - [JAR]
org.forester.surfacing
├─ org.forester.surfacing.AdjactantDirectedBinaryDomainCombination.class - [JAR]
├─ org.forester.surfacing.AdjactantDirectedCombinableDomains.class - [JAR]
├─ org.forester.surfacing.BasicBinaryDomainCombination.class - [JAR]
├─ org.forester.surfacing.BasicCombinableDomains.class - [JAR]
├─ org.forester.surfacing.BasicDomainSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.BasicGenomeWideCombinableDomains.class - [JAR]
├─ org.forester.surfacing.CombinableDomains.class - [JAR]
├─ org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarity.class - [JAR]
├─ org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.CountsBasedPairwiseDomainSimilarity.class - [JAR]
├─ org.forester.surfacing.DirectedBinaryDomainCombination.class - [JAR]
├─ org.forester.surfacing.DirectedCombinableDomains.class - [JAR]
├─ org.forester.surfacing.DomainArchitectureBasedGenomeSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.DomainCountsBasedPairwiseSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.DomainCountsDifferenceUtil.class - [JAR]
├─ org.forester.surfacing.DomainLengths.class - [JAR]
├─ org.forester.surfacing.DomainLengthsTable.class - [JAR]
├─ org.forester.surfacing.DomainParsimonyCalculator.class - [JAR]
├─ org.forester.surfacing.DomainSimilarity.class - [JAR]
├─ org.forester.surfacing.DomainSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.GenomeWideCombinableDomains.class - [JAR]
├─ org.forester.surfacing.MappingResults.class - [JAR]
├─ org.forester.surfacing.PairwiseDomainSimilarity.class - [JAR]
├─ org.forester.surfacing.PairwiseDomainSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.PairwiseGenomeComparator.class - [JAR]
├─ org.forester.surfacing.PrintableSpeciesSpecificDcData.class - [JAR]
├─ org.forester.surfacing.ProteinCountsBasedPairwiseDomainSimilarityCalculator.class - [JAR]
├─ org.forester.surfacing.SimpleDomain.class - [JAR]
├─ org.forester.surfacing.SpeciesSpecificDcData.class - [JAR]
├─ org.forester.surfacing.SurfacingConstants.class - [JAR]
├─ org.forester.surfacing.SurfacingUtil.class - [JAR]
├─ org.forester.surfacing.TestSurfacing.class - [JAR]
org.forester.io.parsers.phyloxml
├─ org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException.class - [JAR]
├─ org.forester.io.parsers.phyloxml.PhyloXmlException.class - [JAR]
├─ org.forester.io.parsers.phyloxml.PhyloXmlHandler.class - [JAR]
├─ org.forester.io.parsers.phyloxml.PhyloXmlMapping.class - [JAR]
├─ org.forester.io.parsers.phyloxml.PhyloXmlParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.PhyloXmlUtil.class - [JAR]
├─ org.forester.io.parsers.phyloxml.XmlElement.class - [JAR]
org.forester.phylogeny.data
├─ org.forester.phylogeny.data.Accession.class - [JAR]
├─ org.forester.phylogeny.data.Annotation.class - [JAR]
├─ org.forester.phylogeny.data.BinaryCharacters.class - [JAR]
├─ org.forester.phylogeny.data.BranchColor.class - [JAR]
├─ org.forester.phylogeny.data.BranchData.class - [JAR]
├─ org.forester.phylogeny.data.BranchWidth.class - [JAR]
├─ org.forester.phylogeny.data.Confidence.class - [JAR]
├─ org.forester.phylogeny.data.Date.class - [JAR]
├─ org.forester.phylogeny.data.Distribution.class - [JAR]
├─ org.forester.phylogeny.data.DomainArchitecture.class - [JAR]
├─ org.forester.phylogeny.data.Event.class - [JAR]
├─ org.forester.phylogeny.data.Identifier.class - [JAR]
├─ org.forester.phylogeny.data.MultipleUris.class - [JAR]
├─ org.forester.phylogeny.data.NodeData.class - [JAR]
├─ org.forester.phylogeny.data.NodeDataField.class - [JAR]
├─ org.forester.phylogeny.data.NodeVisualData.class - [JAR]
├─ org.forester.phylogeny.data.PhylogenyData.class - [JAR]
├─ org.forester.phylogeny.data.PhylogenyDataUtil.class - [JAR]
├─ org.forester.phylogeny.data.Point.class - [JAR]
├─ org.forester.phylogeny.data.Polygon.class - [JAR]
├─ org.forester.phylogeny.data.PropertiesMap.class - [JAR]
├─ org.forester.phylogeny.data.Property.class - [JAR]
├─ org.forester.phylogeny.data.ProteinDomain.class - [JAR]
├─ org.forester.phylogeny.data.Reference.class - [JAR]
├─ org.forester.phylogeny.data.Sequence.class - [JAR]
├─ org.forester.phylogeny.data.SequenceRelation.class - [JAR]
├─ org.forester.phylogeny.data.Taxonomy.class - [JAR]
├─ org.forester.phylogeny.data.Uri.class - [JAR]
org.forester.development
├─ org.forester.development.AbstractRenderer.class - [JAR]
├─ org.forester.development.DevelopmentTools.class - [JAR]
├─ org.forester.development.Hello3d.class - [JAR]
├─ org.forester.development.HmmerRest.class - [JAR]
├─ org.forester.development.MsaRenderer.class - [JAR]
├─ org.forester.development.RandomThing.class - [JAR]
├─ org.forester.development.ResidueRenderer.class - [JAR]
├─ org.forester.development.Test.class - [JAR]
├─ org.forester.development.Time.class - [JAR]
├─ org.forester.development.neTest.class - [JAR]
org.forester.ws.hmmer
├─ org.forester.ws.hmmer.Test.class - [JAR]
org.forester.ws.seqdb
├─ org.forester.ws.seqdb.EbiDbEntry.class - [JAR]
├─ org.forester.ws.seqdb.SequenceDatabaseEntry.class - [JAR]
├─ org.forester.ws.seqdb.SequenceDbWsTools.class - [JAR]
├─ org.forester.ws.seqdb.UniProtEntry.class - [JAR]
├─ org.forester.ws.seqdb.UniProtTaxonomy.class - [JAR]
org.forester.ws.wabi
├─ org.forester.ws.wabi.RestUtil.class - [JAR]
├─ org.forester.ws.wabi.TxSearch.class - [JAR]
├─ org.forester.ws.wabi.WabiTools.class - [JAR]
org.forester.archaeopteryx.webservices
├─ org.forester.archaeopteryx.webservices.BasicPhylogeniesWebserviceClient.class - [JAR]
├─ org.forester.archaeopteryx.webservices.PhylogeniesWebserviceClient.class - [JAR]
├─ org.forester.archaeopteryx.webservices.WebserviceUtil.class - [JAR]
├─ org.forester.archaeopteryx.webservices.WebservicesManager.class - [JAR]
org.forester.go.etc
├─ org.forester.go.etc.MetaOntologizer.class - [JAR]
├─ org.forester.go.etc.OntologizerResult.class - [JAR]
org.forester.evoinference.parsimony
├─ org.forester.evoinference.parsimony.DolloParsimony.class - [JAR]
├─ org.forester.evoinference.parsimony.FitchParsimony.class - [JAR]
├─ org.forester.evoinference.parsimony.SankoffParsimony.class - [JAR]
org.forester.msa_compactor
├─ org.forester.msa_compactor.Chart.class - [JAR]
├─ org.forester.msa_compactor.GapContribution.class - [JAR]
├─ org.forester.msa_compactor.MsaCompactor.class - [JAR]
├─ org.forester.msa_compactor.MsaProperties.class - [JAR]
org.forester.analysis
├─ org.forester.analysis.AncestralTaxonomyInference.class - [JAR]
├─ org.forester.analysis.AncestralTaxonomyInferenceException.class - [JAR]
├─ org.forester.analysis.TaxonomyDataManager.class - [JAR]
org.forester.evoinference.matrix.character
├─ org.forester.evoinference.matrix.character.BasicCharacterStateMatrix.class - [JAR]
├─ org.forester.evoinference.matrix.character.CharacterStateMatrix.class - [JAR]
org.forester.evoinference.matrix.distance
├─ org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix.class - [JAR]
├─ org.forester.evoinference.matrix.distance.DistanceMatrix.class - [JAR]
org.forester.pccx
├─ org.forester.pccx.BasicExternalNodeBasedCoverageExtender.class - [JAR]
├─ org.forester.pccx.BranchCountingBasedScoringMethod.class - [JAR]
├─ org.forester.pccx.BranchLengthBasedScoringMethod.class - [JAR]
├─ org.forester.pccx.Coverage.class - [JAR]
├─ org.forester.pccx.CoverageCalculationMethod.class - [JAR]
├─ org.forester.pccx.CoverageCalculationOptions.class - [JAR]
├─ org.forester.pccx.CoverageCalculator.class - [JAR]
├─ org.forester.pccx.CoverageExtender.class - [JAR]
├─ org.forester.pccx.ExternalNodeBasedCoverage.class - [JAR]
├─ org.forester.pccx.ExternalNodeBasedCoverageMethod.class - [JAR]
├─ org.forester.pccx.ExternalNodeBasedCoverageMethodOptions.class - [JAR]
├─ org.forester.pccx.LogBranchLengthBasedScoringMethod.class - [JAR]
├─ org.forester.pccx.ModelingUtils.class - [JAR]
├─ org.forester.pccx.ScoringMethodForExternalNode.class - [JAR]
├─ org.forester.pccx.TestPccx.class - [JAR]
org.forester.io.parsers.phyloxml.data
├─ org.forester.io.parsers.phyloxml.data.AccessionParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.AnnotationParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.BinaryCharactersParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.BranchWidthParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.ColorParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.ConfidenceParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.DateParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.DistributionParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.DomainArchitectureParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.EventParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.IdentifierParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.PhylogenyDataPhyloXmlParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.PointParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.PolygonParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.PropertyParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.ProteinDomainParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.ReferenceParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.SequenceParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.SequenceRelationParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.TaxonomyParser.class - [JAR]
├─ org.forester.io.parsers.phyloxml.data.UriParser.class - [JAR]
org.forester.archaeopteryx.tools
├─ org.forester.archaeopteryx.tools.AncestralTaxonomyInferrer.class - [JAR]
├─ org.forester.archaeopteryx.tools.Blast.class - [JAR]
├─ org.forester.archaeopteryx.tools.ImageLoader.class - [JAR]
├─ org.forester.archaeopteryx.tools.InferenceManager.class - [JAR]
├─ org.forester.archaeopteryx.tools.PhyloInferenceDialog.class - [JAR]
├─ org.forester.archaeopteryx.tools.PhylogeneticInferenceOptions.class - [JAR]
├─ org.forester.archaeopteryx.tools.PhylogeneticInferrer.class - [JAR]
├─ org.forester.archaeopteryx.tools.ProcessPool.class - [JAR]
├─ org.forester.archaeopteryx.tools.ProcessRunning.class - [JAR]
├─ org.forester.archaeopteryx.tools.RunnableProcess.class - [JAR]
├─ org.forester.archaeopteryx.tools.SequenceDataRetriver.class - [JAR]
org.forester.rio
├─ org.forester.rio.RIO.class - [JAR]
├─ org.forester.rio.RIOException.class - [JAR]
├─ org.forester.rio.TestRIO.class - [JAR]
org.forester.io.parsers
├─ org.forester.io.parsers.FastaParser.class - [JAR]
├─ org.forester.io.parsers.GeneralMsaParser.class - [JAR]
├─ org.forester.io.parsers.HmmPfamOutputParser.class - [JAR]
├─ org.forester.io.parsers.HmmscanPerDomainTableParser.class - [JAR]
├─ org.forester.io.parsers.IteratingPhylogenyParser.class - [JAR]
├─ org.forester.io.parsers.PhylogenyParser.class - [JAR]
├─ org.forester.io.parsers.SymmetricalDistanceMatrixParser.class - [JAR]
org.forester.archaeopteryx
├─ org.forester.archaeopteryx.AptxUtil.class - [JAR]
├─ org.forester.archaeopteryx.Archaeopteryx.class - [JAR]
├─ org.forester.archaeopteryx.ArchaeopteryxA.class - [JAR]
├─ org.forester.archaeopteryx.ArchaeopteryxE.class - [JAR]
├─ org.forester.archaeopteryx.ColorSchemeChooser.class - [JAR]
├─ org.forester.archaeopteryx.Configuration.class - [JAR]
├─ org.forester.archaeopteryx.Constants.class - [JAR]
├─ org.forester.archaeopteryx.ControlPanel.class - [JAR]
├─ org.forester.archaeopteryx.DefaultFilter.class - [JAR]
├─ org.forester.archaeopteryx.FontChooser.class - [JAR]
├─ org.forester.archaeopteryx.GraphicsFileFilter.class - [JAR]
├─ org.forester.archaeopteryx.MainFrame.class - [JAR]
├─ org.forester.archaeopteryx.MainFrameApplet.class - [JAR]
├─ org.forester.archaeopteryx.MainFrameApplication.class - [JAR]
├─ org.forester.archaeopteryx.MainPanel.class - [JAR]
├─ org.forester.archaeopteryx.MainPanelApplets.class - [JAR]
├─ org.forester.archaeopteryx.MouseListener.class - [JAR]
├─ org.forester.archaeopteryx.MsaFileFilter.class - [JAR]
├─ org.forester.archaeopteryx.NHFilter.class - [JAR]
├─ org.forester.archaeopteryx.NHXFilter.class - [JAR]
├─ org.forester.archaeopteryx.NexusFilter.class - [JAR]
├─ org.forester.archaeopteryx.NodeEditPanel.class - [JAR]
├─ org.forester.archaeopteryx.NodeFrame.class - [JAR]
├─ org.forester.archaeopteryx.NodePanel.class - [JAR]
├─ org.forester.archaeopteryx.Options.class - [JAR]
├─ org.forester.archaeopteryx.PdfExporter.class - [JAR]
├─ org.forester.archaeopteryx.PdfFilter.class - [JAR]
├─ org.forester.archaeopteryx.Printer.class - [JAR]
├─ org.forester.archaeopteryx.SequencesFileFilter.class - [JAR]
├─ org.forester.archaeopteryx.TextFrame.class - [JAR]
├─ org.forester.archaeopteryx.TolFilter.class - [JAR]
├─ org.forester.archaeopteryx.TreeColorSet.class - [JAR]
├─ org.forester.archaeopteryx.TreeFontSet.class - [JAR]
├─ org.forester.archaeopteryx.TreePanel.class - [JAR]
├─ org.forester.archaeopteryx.TreePanelUtil.class - [JAR]
├─ org.forester.archaeopteryx.UrlTreeReader.class - [JAR]
├─ org.forester.archaeopteryx.XMLFilter.class - [JAR]
org.forester.msa
├─ org.forester.msa.BasicMsa.class - [JAR]
├─ org.forester.msa.ClustalOmega.class - [JAR]
├─ org.forester.msa.DeleteableMsa.class - [JAR]
├─ org.forester.msa.Mafft.class - [JAR]
├─ org.forester.msa.Msa.class - [JAR]
├─ org.forester.msa.MsaFormatException.class - [JAR]
├─ org.forester.msa.MsaInferrer.class - [JAR]
├─ org.forester.msa.MsaMethods.class - [JAR]
├─ org.forester.msa.ResampleableMsa.class - [JAR]
org.forester.util
├─ org.forester.util.AsciiHistogram.class - [JAR]
├─ org.forester.util.BasicDescriptiveStatistics.class - [JAR]
├─ org.forester.util.BasicTable.class - [JAR]
├─ org.forester.util.BasicTableParser.class - [JAR]
├─ org.forester.util.CommandLineArguments.class - [JAR]
├─ org.forester.util.CommandProcessBuilder.class - [JAR]
├─ org.forester.util.DescriptiveStatistics.class - [JAR]
├─ org.forester.util.EasyWriter.class - [JAR]
├─ org.forester.util.ExternalProgram.class - [JAR]
├─ org.forester.util.FailedConditionCheckException.class - [JAR]
├─ org.forester.util.ForesterConstants.class - [JAR]
├─ org.forester.util.ForesterUtil.class - [JAR]
├─ org.forester.util.GeneralTable.class - [JAR]
├─ org.forester.util.IllegalFormatUseException.class - [JAR]
├─ org.forester.util.SequenceAccessionTools.class - [JAR]
├─ org.forester.util.StringInt.class - [JAR]
├─ org.forester.util.SystemCommandExecutor.class - [JAR]
├─ org.forester.util.TaxonomyColors.class - [JAR]
├─ org.forester.util.TaxonomyGroups.class - [JAR]
├─ org.forester.util.TaxonomyUtil.class - [JAR]
├─ org.forester.util.ThreadedStreamHandler.class - [JAR]
├─ org.forester.util.WindowsUtils.class - [JAR]
org.forester.evoinference.distance
├─ org.forester.evoinference.distance.NeighborJoining.class - [JAR]
├─ org.forester.evoinference.distance.NeighborJoiningF.class - [JAR]
├─ org.forester.evoinference.distance.NeighborJoiningR.class - [JAR]
├─ org.forester.evoinference.distance.PairwiseDistanceCalculator.class - [JAR]
├─ org.forester.evoinference.distance.Sarray.class - [JAR]
├─ org.forester.evoinference.distance.Sset.class - [JAR]
org.forester.applications
├─ org.forester.applications.aa.class - [JAR]
├─ org.forester.applications.aaa.class - [JAR]
├─ org.forester.applications.core_chars.class - [JAR]
├─ org.forester.applications.domainloss_replacement.class - [JAR]
├─ org.forester.applications.genome_counts_for_once_appearing_dcs.class - [JAR]
├─ org.forester.applications.get_distances.class - [JAR]
├─ org.forester.applications.get_genome_counts_per_char.class - [JAR]
├─ org.forester.applications.get_loss_nodes.class - [JAR]
├─ org.forester.applications.get_shared_chars.class - [JAR]
├─ org.forester.applications.get_subtree_specific_chars.class - [JAR]
├─ org.forester.applications.inverted_dcs.class - [JAR]
├─ org.forester.applications.map_lengths.class - [JAR]
├─ org.forester.applications.phylo2coloredgraphics.class - [JAR]
├─ org.forester.applications.phylo2graphics.class - [JAR]
├─ org.forester.applications.reinv_count.class - [JAR]
├─ org.forester.applications.set_comparator.class - [JAR]
├─ org.forester.applications.shared_chars_in_ext_nodes.class - [JAR]
├─ org.forester.applications.simple_node_processor.class - [JAR]
├─ org.forester.applications.subtree_feature_count.class - [JAR]
├─ org.forester.applications.tax_code_cleaner.class - [JAR]
├─ org.forester.applications.wiki_examples.class - [JAR]
org.forester.io.writers
├─ org.forester.io.writers.PhyloXmlNodeWriter.class - [JAR]
├─ org.forester.io.writers.PhylogenyWriter.class - [JAR]
├─ org.forester.io.writers.SequenceWriter.class - [JAR]
org.forester.io.parsers.nhx
├─ org.forester.io.parsers.nhx.NHXFormatException.class - [JAR]
├─ org.forester.io.parsers.nhx.NHXParser.class - [JAR]
├─ org.forester.io.parsers.nhx.NHXtags.class - [JAR]
org.forester.io.parsers.nexus
├─ org.forester.io.parsers.nexus.NexusBinaryStatesMatrixParser.class - [JAR]
├─ org.forester.io.parsers.nexus.NexusCharactersParser.class - [JAR]
├─ org.forester.io.parsers.nexus.NexusConstants.class - [JAR]
├─ org.forester.io.parsers.nexus.NexusFormatException.class - [JAR]
├─ org.forester.io.parsers.nexus.NexusPhylogeniesParser.class - [JAR]
├─ org.forester.io.parsers.nexus.PaupLogParser.class - [JAR]
org.forester.application
├─ org.forester.application.annotator.class - [JAR]
├─ org.forester.application.check_fasta.class - [JAR]
├─ org.forester.application.confadd.class - [JAR]
├─ org.forester.application.count_support.class - [JAR]
├─ org.forester.application.decorator.class - [JAR]
├─ org.forester.application.decoratorX.class - [JAR]
├─ org.forester.application.dom_dup.class - [JAR]
├─ org.forester.application.fasta_split.class - [JAR]
├─ org.forester.application.gene_tree_preprocess.class - [JAR]
├─ org.forester.application.goac.class - [JAR]
├─ org.forester.application.gsdi.class - [JAR]
├─ org.forester.application.mcc.class - [JAR]
├─ org.forester.application.meta_ontologizer.class - [JAR]
├─ org.forester.application.msa_compactor.class - [JAR]
├─ org.forester.application.nj.class - [JAR]
├─ org.forester.application.obo_tool.class - [JAR]
├─ org.forester.application.pccx.class - [JAR]
├─ org.forester.application.pfam2go_extractor.class - [JAR]
├─ org.forester.application.pfam_go.class - [JAR]
├─ org.forester.application.pfamacc2go.class - [JAR]
├─ org.forester.application.pfamacc2pfamid.class - [JAR]
├─ org.forester.application.phylostrip.class - [JAR]
├─ org.forester.application.phyloxml_converter.class - [JAR]
├─ org.forester.application.rio.class - [JAR]
├─ org.forester.application.support_statistics.class - [JAR]
├─ org.forester.application.support_transfer.class - [JAR]
├─ org.forester.application.surfacing.class - [JAR]
├─ org.forester.application.table2fasta.class - [JAR]
org.forester.go
├─ org.forester.go.BasicGoRelationship.class - [JAR]
├─ org.forester.go.BasicGoSubset.class - [JAR]
├─ org.forester.go.BasicGoTerm.class - [JAR]
├─ org.forester.go.BasicGoXRef.class - [JAR]
├─ org.forester.go.GoId.class - [JAR]
├─ org.forester.go.GoNameSpace.class - [JAR]
├─ org.forester.go.GoRelationship.class - [JAR]
├─ org.forester.go.GoSubset.class - [JAR]
├─ org.forester.go.GoTerm.class - [JAR]
├─ org.forester.go.GoUtils.class - [JAR]
├─ org.forester.go.GoXRef.class - [JAR]
├─ org.forester.go.Mapping.class - [JAR]
├─ org.forester.go.OBOparser.class - [JAR]
├─ org.forester.go.PfamToGoMapping.class - [JAR]
├─ org.forester.go.PfamToGoParser.class - [JAR]
├─ org.forester.go.TestGo.class - [JAR]
org.forester.datastructures
├─ org.forester.datastructures.IntMatrix.class - [JAR]
├─ org.forester.datastructures.Queue.class - [JAR]
org.forester.species
├─ org.forester.species.BasicSpecies.class - [JAR]
├─ org.forester.species.Species.class - [JAR]
org.forester.io.parsers.util
├─ org.forester.io.parsers.util.ParserUtils.class - [JAR]
├─ org.forester.io.parsers.util.PhylogenyParserException.class - [JAR]
org.forester.tools
├─ org.forester.tools.ConfidenceAssessor.class - [JAR]
├─ org.forester.tools.PhylogenyDecorator.class - [JAR]
├─ org.forester.tools.SupportCount.class - [JAR]
├─ org.forester.tools.TreeSplitMatrix.class - [JAR]
org.forester.evoinference
├─ org.forester.evoinference.TestPhylogenyReconstruction.class - [JAR]
org.forester.evoinference.tools
├─ org.forester.evoinference.tools.BootstrapResampler.class - [JAR]
