Download biojava-adam.jar

Version	Vulnerabilities	Updated
1.0	biojava-adam-1.0.jar	8.32 MB	May 26, 2022
0.9.x	biojava-adam-0.9.0.jar	8.21 MB	Jan 25, 2022
0.8.x	biojava-adam-0.8.0.jar	7.37 MB	Jan 10, 2022
0.7.x	biojava-adam-0.7.0.jar	5.61 MB	Jun 07, 2021
0.6.x	biojava-adam-0.6.0.jar	5.60 MB	Mar 15, 2021
0.5.x	biojava-adam-0.5.0.jar	5.60 MB	Jan 25, 2021
0.4.x	biojava-adam-0.4.0.jar	5.60 MB	Aug 01, 2020
0.3.x	biojava-adam-0.3.0.jar	5.63 MB	Apr 06, 2020
0.2.x	biojava-adam-0.2.0.jar	5.62 MB	Sep 30, 2019
0.1.x	biojava-adam-0.1.0.jar	5.43 MB	Jul 10, 2019

View Java Class Source Code in JAR file

Download JD-GUI to open JAR file and explore Java source code file (.class .java)
Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window biojava-adam-1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.

org.biojava.nbio.adam.shaded.com.google.common.io

├─ org.biojava.nbio.adam.shaded.com.google.common.io.AppendableWriter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.BaseEncoding.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ByteArrayDataInput.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ByteArrayDataOutput.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ByteProcessor.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ByteSink.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ByteSource.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ByteStreams.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.CharSequenceReader.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.CharSink.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.CharSource.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.CharStreams.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.Closeables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.Closer.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.CountingInputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.CountingOutputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.FileBackedOutputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.FileWriteMode.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.Files.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.Flushables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.InsecureRecursiveDeleteException.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.Java8Compatibility.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.LineBuffer.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.LineProcessor.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.LineReader.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.LittleEndianDataInputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.LittleEndianDataOutputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.MoreFiles.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.MultiInputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.MultiReader.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.PatternFilenameFilter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.ReaderInputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.RecursiveDeleteOption.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.Resources.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.io.package-info.class - [JAR]

org.forester.test.examples

├─ org.forester.test.examples.Example1.class - [JAR]

├─ org.forester.test.examples.Example2.class - [JAR]

├─ org.forester.test.examples.Example3.class - [JAR]

├─ org.forester.test.examples.Example4.class - [JAR]

├─ org.forester.test.examples.Example5.class - [JAR]

org.apache.commons.codec.cli

├─ org.apache.commons.codec.cli.Digest.class - [JAR]

org.biojava.nbio.genome

├─ org.biojava.nbio.genome.App.class - [JAR]

├─ org.biojava.nbio.genome.GeneFeatureHelper.class - [JAR]

org.checkerframework.checker.calledmethods.qual

├─ org.checkerframework.checker.calledmethods.qual.CalledMethods.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.CalledMethodsBottom.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.CalledMethodsPredicate.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.EnsuresCalledMethods.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.EnsuresCalledMethodsIf.class - [JAR]

org.forester.archaeopteryx.phylogeny.data

├─ org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture.class - [JAR]

├─ org.forester.archaeopteryx.phylogeny.data.RenderableMsaSequence.class - [JAR]

├─ org.forester.archaeopteryx.phylogeny.data.RenderablePhylogenyData.class - [JAR]

├─ org.forester.archaeopteryx.phylogeny.data.RenderableVector.class - [JAR]

com.sun.xml.bind.v2.model.core

├─ com.sun.xml.bind.v2.model.core.Adapter.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ArrayInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.AttributePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.BuiltinLeafInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ClassInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.Element.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ElementInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ElementPropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.EnumConstant.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.EnumLeafInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ErrorHandler.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ID.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.LeafInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.MapPropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.MaybeElement.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.NonElement.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.NonElementRef.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.PropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.PropertyKind.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.Ref.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ReferencePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.RegistryInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.TypeInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.TypeInfoSet.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.TypeRef.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.ValuePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.WildcardMode.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.WildcardTypeInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.core.package-info.class - [JAR]

org.forester.protein

├─ org.forester.protein.BasicDomain.class - [JAR]

├─ org.forester.protein.BasicProtein.class - [JAR]

├─ org.forester.protein.BinaryDomainCombination.class - [JAR]

├─ org.forester.protein.Domain.class - [JAR]

├─ org.forester.protein.Protein.class - [JAR]

├─ org.forester.protein.ProteinId.class - [JAR]

org.forester.sdi

├─ org.forester.sdi.GSDI.class - [JAR]

├─ org.forester.sdi.GSDII.class - [JAR]

├─ org.forester.sdi.GSDIR.class - [JAR]

├─ org.forester.sdi.GSDIsummaryResult.class - [JAR]

├─ org.forester.sdi.NodesLinkingResult.class - [JAR]

├─ org.forester.sdi.SDI.class - [JAR]

├─ org.forester.sdi.SDIException.class - [JAR]

├─ org.forester.sdi.SDIR.class - [JAR]

├─ org.forester.sdi.SDIutil.class - [JAR]

├─ org.forester.sdi.TestGSDI.class - [JAR]

com.google.inject

├─ com.google.inject.AbstractModule.class - [JAR]

├─ com.google.inject.Binder.class - [JAR]

├─ com.google.inject.Binding.class - [JAR]

├─ com.google.inject.BindingAnnotation.class - [JAR]

├─ com.google.inject.ConfigurationException.class - [JAR]

├─ com.google.inject.CreationException.class - [JAR]

├─ com.google.inject.Exposed.class - [JAR]

├─ com.google.inject.Guice.class - [JAR]

├─ com.google.inject.ImplementedBy.class - [JAR]

├─ com.google.inject.Inject.class - [JAR]

├─ com.google.inject.Injector.class - [JAR]

├─ com.google.inject.Key.class - [JAR]

├─ com.google.inject.MembersInjector.class - [JAR]

├─ com.google.inject.Module.class - [JAR]

├─ com.google.inject.OutOfScopeException.class - [JAR]

├─ com.google.inject.PrivateBinder.class - [JAR]

├─ com.google.inject.PrivateModule.class - [JAR]

├─ com.google.inject.ProvidedBy.class - [JAR]

├─ com.google.inject.Provider.class - [JAR]

├─ com.google.inject.Provides.class - [JAR]

├─ com.google.inject.ProvisionException.class - [JAR]

├─ com.google.inject.RestrictedBindingSource.class - [JAR]

├─ com.google.inject.Scope.class - [JAR]

├─ com.google.inject.ScopeAnnotation.class - [JAR]

├─ com.google.inject.Scopes.class - [JAR]

├─ com.google.inject.Singleton.class - [JAR]

├─ com.google.inject.Stage.class - [JAR]

├─ com.google.inject.TypeLiteral.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.util.concurrent

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractCatchingFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractExecutionThreadService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractIdleService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractListeningExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractScheduledService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AbstractTransformFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AggregateFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AggregateFutureState.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AsyncCallable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AsyncFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AtomicDouble.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AtomicDoubleArray.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.AtomicLongMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Atomics.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Callables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ClosingFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.CollectionFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.CombinedFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.CycleDetectingLockFactory.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.DirectExecutor.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ExecutionError.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ExecutionList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ExecutionSequencer.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.FakeTimeLimiter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.FluentFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingBlockingDeque.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingBlockingQueue.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingCondition.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingFluentFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingListenableFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingListeningExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ForwardingLock.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.FutureCallback.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Futures.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.FuturesGetChecked.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.GwtFluentFutureCatchingSpecialization.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.GwtFuturesCatchingSpecialization.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.IgnoreJRERequirement.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ImmediateFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Internal.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.InterruptibleTask.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.JdkFutureAdapters.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ListenableFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ListenableFutureTask.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ListenableScheduledFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ListenerCallQueue.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ListeningExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ListeningScheduledExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Monitor.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.MoreExecutors.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.OverflowAvoidingLockSupport.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Partially.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Platform.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.RateLimiter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Runnables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.SequentialExecutor.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Service.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ServiceManager.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ServiceManagerBridge.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.SettableFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.SimpleTimeLimiter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.SmoothRateLimiter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Striped.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.ThreadFactoryBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.TimeLimiter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.TimeoutFuture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.TrustedListenableFutureTask.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.UncaughtExceptionHandlers.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.UncheckedExecutionException.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.UncheckedTimeoutException.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.Uninterruptibles.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.WrappingExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.WrappingScheduledExecutorService.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.package-info.class - [JAR]

org.forester.surfacing

├─ org.forester.surfacing.AdjactantDirectedBinaryDomainCombination.class - [JAR]

├─ org.forester.surfacing.AdjactantDirectedCombinableDomains.class - [JAR]

├─ org.forester.surfacing.BasicBinaryDomainCombination.class - [JAR]

├─ org.forester.surfacing.BasicCombinableDomains.class - [JAR]

├─ org.forester.surfacing.BasicDomainSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.BasicGenomeWideCombinableDomains.class - [JAR]

├─ org.forester.surfacing.CombinableDomains.class - [JAR]

├─ org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarity.class - [JAR]

├─ org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.CountsBasedPairwiseDomainSimilarity.class - [JAR]

├─ org.forester.surfacing.DirectedBinaryDomainCombination.class - [JAR]

├─ org.forester.surfacing.DirectedCombinableDomains.class - [JAR]

├─ org.forester.surfacing.DomainArchitectureBasedGenomeSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.DomainCountsBasedPairwiseSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.DomainCountsDifferenceUtil.class - [JAR]

├─ org.forester.surfacing.DomainLengths.class - [JAR]

├─ org.forester.surfacing.DomainLengthsTable.class - [JAR]

├─ org.forester.surfacing.DomainParsimonyCalculator.class - [JAR]

├─ org.forester.surfacing.DomainSimilarity.class - [JAR]

├─ org.forester.surfacing.DomainSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.GenomeWideCombinableDomains.class - [JAR]

├─ org.forester.surfacing.MappingResults.class - [JAR]

├─ org.forester.surfacing.PairwiseDomainSimilarity.class - [JAR]

├─ org.forester.surfacing.PairwiseDomainSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.PairwiseGenomeComparator.class - [JAR]

├─ org.forester.surfacing.PrintableSpeciesSpecificDcData.class - [JAR]

├─ org.forester.surfacing.ProteinCountsBasedPairwiseDomainSimilarityCalculator.class - [JAR]

├─ org.forester.surfacing.SimpleDomain.class - [JAR]

├─ org.forester.surfacing.SpeciesSpecificDcData.class - [JAR]

├─ org.forester.surfacing.SurfacingConstants.class - [JAR]

├─ org.forester.surfacing.SurfacingUtil.class - [JAR]

├─ org.forester.surfacing.TestSurfacing.class - [JAR]

com.sun.xml.txw2

├─ com.sun.xml.txw2.Attribute.class - [JAR]

├─ com.sun.xml.txw2.Cdata.class - [JAR]

├─ com.sun.xml.txw2.Comment.class - [JAR]

├─ com.sun.xml.txw2.ContainerElement.class - [JAR]

├─ com.sun.xml.txw2.Content.class - [JAR]

├─ com.sun.xml.txw2.ContentVisitor.class - [JAR]

├─ com.sun.xml.txw2.DatatypeWriter.class - [JAR]

├─ com.sun.xml.txw2.Document.class - [JAR]

├─ com.sun.xml.txw2.EndDocument.class - [JAR]

├─ com.sun.xml.txw2.EndTag.class - [JAR]

├─ com.sun.xml.txw2.IllegalAnnotationException.class - [JAR]

├─ com.sun.xml.txw2.IllegalSignatureException.class - [JAR]

├─ com.sun.xml.txw2.NamespaceDecl.class - [JAR]

├─ com.sun.xml.txw2.NamespaceResolver.class - [JAR]

├─ com.sun.xml.txw2.NamespaceSupport.class - [JAR]

├─ com.sun.xml.txw2.Pcdata.class - [JAR]

├─ com.sun.xml.txw2.StartDocument.class - [JAR]

├─ com.sun.xml.txw2.StartTag.class - [JAR]

├─ com.sun.xml.txw2.TXW.class - [JAR]

├─ com.sun.xml.txw2.Text.class - [JAR]

├─ com.sun.xml.txw2.TxwException.class - [JAR]

├─ com.sun.xml.txw2.TypedXmlWriter.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.net

├─ org.biojava.nbio.adam.shaded.com.google.common.net.HostAndPort.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.HostSpecifier.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.HttpHeaders.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.InetAddresses.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.InternetDomainName.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.MediaType.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.PercentEscaper.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.UrlEscapers.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.net.package-info.class - [JAR]

javax.xml.bind.util

├─ javax.xml.bind.util.JAXBResult.class - [JAR]

├─ javax.xml.bind.util.JAXBSource.class - [JAR]

├─ javax.xml.bind.util.Messages.class - [JAR]

├─ javax.xml.bind.util.ValidationEventCollector.class - [JAR]

org.checkerframework.checker.nullness

├─ org.checkerframework.checker.nullness.NullnessUtil.class - [JAR]

├─ org.checkerframework.checker.nullness.Opt.class - [JAR]

org.forester.ws.hmmer

├─ org.forester.ws.hmmer.Test.class - [JAR]

org.forester.ws.seqdb

├─ org.forester.ws.seqdb.EbiDbEntry.class - [JAR]

├─ org.forester.ws.seqdb.SequenceDatabaseEntry.class - [JAR]

├─ org.forester.ws.seqdb.SequenceDbWsTools.class - [JAR]

├─ org.forester.ws.seqdb.UniProtEntry.class - [JAR]

├─ org.forester.ws.seqdb.UniProtTaxonomy.class - [JAR]

org.biojava.nbio.genome.parsers.geneid

├─ org.biojava.nbio.genome.parsers.geneid.GeneIDXMLReader.class - [JAR]

com.approximatrix.charting.render.shape

├─ com.approximatrix.charting.render.shape.Diamond2D.class - [JAR]

├─ com.approximatrix.charting.render.shape.Triangle2D.class - [JAR]

org.biojava.nbio.genome.uniprot

├─ org.biojava.nbio.genome.uniprot.UniprotToFasta.class - [JAR]

org.checkerframework.framework.qual

├─ org.checkerframework.framework.qual.AnnotatedFor.class - [JAR]

├─ org.checkerframework.framework.qual.CFComment.class - [JAR]

├─ org.checkerframework.framework.qual.ConditionalPostconditionAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.Covariant.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultFor.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultQualifierForUse.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultQualifierInHierarchy.class - [JAR]

├─ org.checkerframework.framework.qual.EnsuresQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.EnsuresQualifierIf.class - [JAR]

├─ org.checkerframework.framework.qual.FieldInvariant.class - [JAR]

├─ org.checkerframework.framework.qual.FromByteCode.class - [JAR]

├─ org.checkerframework.framework.qual.FromStubFile.class - [JAR]

├─ org.checkerframework.framework.qual.HasQualifierParameter.class - [JAR]

├─ org.checkerframework.framework.qual.IgnoreInWholeProgramInference.class - [JAR]

├─ org.checkerframework.framework.qual.InheritedAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.InvisibleQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.JavaExpression.class - [JAR]

├─ org.checkerframework.framework.qual.LiteralKind.class - [JAR]

├─ org.checkerframework.framework.qual.MonotonicQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.NoDefaultQualifierForUse.class - [JAR]

├─ org.checkerframework.framework.qual.NoQualifierParameter.class - [JAR]

├─ org.checkerframework.framework.qual.PolymorphicQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.PostconditionAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.PreconditionAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.QualifierArgument.class - [JAR]

├─ org.checkerframework.framework.qual.QualifierForLiterals.class - [JAR]

├─ org.checkerframework.framework.qual.RelevantJavaTypes.class - [JAR]

├─ org.checkerframework.framework.qual.RequiresQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.StubFiles.class - [JAR]

├─ org.checkerframework.framework.qual.SubtypeOf.class - [JAR]

├─ org.checkerframework.framework.qual.TargetLocations.class - [JAR]

├─ org.checkerframework.framework.qual.TypeKind.class - [JAR]

├─ org.checkerframework.framework.qual.TypeUseLocation.class - [JAR]

├─ org.checkerframework.framework.qual.Unused.class - [JAR]

├─ org.checkerframework.framework.qual.UpperBoundFor.class - [JAR]

org.biojava.nbio.alignment

├─ org.biojava.nbio.alignment.Alignments.class - [JAR]

├─ org.biojava.nbio.alignment.FractionalIdentityInProfileScorer.class - [JAR]

├─ org.biojava.nbio.alignment.FractionalIdentityScorer.class - [JAR]

├─ org.biojava.nbio.alignment.FractionalSimilarityInProfileScorer.class - [JAR]

├─ org.biojava.nbio.alignment.FractionalSimilarityScorer.class - [JAR]

├─ org.biojava.nbio.alignment.GuideTree.class - [JAR]

├─ org.biojava.nbio.alignment.NeedlemanWunsch.class - [JAR]

├─ org.biojava.nbio.alignment.SimpleGapPenalty.class - [JAR]

├─ org.biojava.nbio.alignment.SimpleProfileProfileAligner.class - [JAR]

├─ org.biojava.nbio.alignment.SmithWaterman.class - [JAR]

├─ org.biojava.nbio.alignment.StandardRescoreRefiner.class - [JAR]

├─ org.biojava.nbio.alignment.SubstitutionMatrixScorer.class - [JAR]

org.biojava.nbio.core.search.io

├─ org.biojava.nbio.core.search.io.Hit.class - [JAR]

├─ org.biojava.nbio.core.search.io.Hsp.class - [JAR]

├─ org.biojava.nbio.core.search.io.Result.class - [JAR]

├─ org.biojava.nbio.core.search.io.ResultFactory.class - [JAR]

├─ org.biojava.nbio.core.search.io.SearchIO.class - [JAR]

org.checkerframework.checker.formatter

├─ org.checkerframework.checker.formatter.FormatUtil.class - [JAR]

org.biojava.nbio.genome.parsers.genename

├─ org.biojava.nbio.genome.parsers.genename.ChromPos.class - [JAR]

├─ org.biojava.nbio.genome.parsers.genename.GeneChromosomePosition.class - [JAR]

├─ org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser.class - [JAR]

├─ org.biojava.nbio.genome.parsers.genename.GeneName.class - [JAR]

├─ org.biojava.nbio.genome.parsers.genename.GeneNamesParser.class - [JAR]

org.forester.evoinference.matrix.distance

├─ org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix.class - [JAR]

├─ org.forester.evoinference.matrix.distance.DistanceMatrix.class - [JAR]

org.biojava.nbio.core.sequence.location

├─ org.biojava.nbio.core.sequence.location.FuzzyPoint.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.InsdcLocations.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.InsdcParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.LocationHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.SequenceLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.SimpleLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.SimplePoint.class - [JAR]

com.sun.xml.bind

├─ com.sun.xml.bind.AccessorFactory.class - [JAR]

├─ com.sun.xml.bind.AccessorFactoryImpl.class - [JAR]

├─ com.sun.xml.bind.AnyTypeAdapter.class - [JAR]

├─ com.sun.xml.bind.CycleRecoverable.class - [JAR]

├─ com.sun.xml.bind.DatatypeConverterImpl.class - [JAR]

├─ com.sun.xml.bind.IDResolver.class - [JAR]

├─ com.sun.xml.bind.InternalAccessorFactory.class - [JAR]

├─ com.sun.xml.bind.Locatable.class - [JAR]

├─ com.sun.xml.bind.Messages.class - [JAR]

├─ com.sun.xml.bind.StackHelper.class - [JAR]

├─ com.sun.xml.bind.Utils.class - [JAR]

├─ com.sun.xml.bind.ValidationEventLocatorEx.class - [JAR]

├─ com.sun.xml.bind.WhiteSpaceProcessor.class - [JAR]

├─ com.sun.xml.bind.XmlAccessorFactory.class - [JAR]

org.biojava.nbio.phylo

├─ org.biojava.nbio.phylo.Comparison.class - [JAR]

├─ org.biojava.nbio.phylo.DistanceMatrixCalculator.class - [JAR]

├─ org.biojava.nbio.phylo.DistanceTreeEvaluator.class - [JAR]

├─ org.biojava.nbio.phylo.ForesterWrapper.class - [JAR]

├─ org.biojava.nbio.phylo.TreeConstructor.class - [JAR]

├─ org.biojava.nbio.phylo.TreeConstructorType.class - [JAR]

├─ org.biojava.nbio.phylo.TreeType.class - [JAR]

org.biojava.nbio.core.sequence.loader

├─ org.biojava.nbio.core.sequence.loader.ArrayListProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.SequenceFileProxyLoader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.StringProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.UniprotProxySequenceReader.class - [JAR]

com.sun.istack.logging

├─ com.sun.istack.logging.Logger.class - [JAR]

├─ com.sun.istack.logging.StackHelper.class - [JAR]

org.forester.applications

├─ org.forester.applications.aa.class - [JAR]

├─ org.forester.applications.aaa.class - [JAR]

├─ org.forester.applications.core_chars.class - [JAR]

├─ org.forester.applications.domainloss_replacement.class - [JAR]

├─ org.forester.applications.genome_counts_for_once_appearing_dcs.class - [JAR]

├─ org.forester.applications.get_distances.class - [JAR]

├─ org.forester.applications.get_genome_counts_per_char.class - [JAR]

├─ org.forester.applications.get_loss_nodes.class - [JAR]

├─ org.forester.applications.get_shared_chars.class - [JAR]

├─ org.forester.applications.get_subtree_specific_chars.class - [JAR]

├─ org.forester.applications.inverted_dcs.class - [JAR]

├─ org.forester.applications.map_lengths.class - [JAR]

├─ org.forester.applications.phylo2coloredgraphics.class - [JAR]

├─ org.forester.applications.phylo2graphics.class - [JAR]

├─ org.forester.applications.reinv_count.class - [JAR]

├─ org.forester.applications.set_comparator.class - [JAR]

├─ org.forester.applications.shared_chars_in_ext_nodes.class - [JAR]

├─ org.forester.applications.simple_node_processor.class - [JAR]

├─ org.forester.applications.subtree_feature_count.class - [JAR]

├─ org.forester.applications.tax_code_cleaner.class - [JAR]

├─ org.forester.applications.wiki_examples.class - [JAR]

org.checkerframework.checker.tainting.qual

├─ org.checkerframework.checker.tainting.qual.PolyTainted.class - [JAR]

├─ org.checkerframework.checker.tainting.qual.Tainted.class - [JAR]

├─ org.checkerframework.checker.tainting.qual.Untainted.class - [JAR]

org.biojava.nbio.core.sequence.storage

├─ org.biojava.nbio.core.sequence.storage.ArrayListSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.BitSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.FourBitSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.JoiningSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.SequenceAsStringHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.SingleCompoundSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.TwoBitSequenceReader.class - [JAR]

org.checkerframework.common.returnsreceiver.qual

├─ org.checkerframework.common.returnsreceiver.qual.BottomThis.class - [JAR]

├─ org.checkerframework.common.returnsreceiver.qual.This.class - [JAR]

├─ org.checkerframework.common.returnsreceiver.qual.UnknownThis.class - [JAR]

org.forester.go

├─ org.forester.go.BasicGoRelationship.class - [JAR]

├─ org.forester.go.BasicGoSubset.class - [JAR]

├─ org.forester.go.BasicGoTerm.class - [JAR]

├─ org.forester.go.BasicGoXRef.class - [JAR]

├─ org.forester.go.GoId.class - [JAR]

├─ org.forester.go.GoNameSpace.class - [JAR]

├─ org.forester.go.GoRelationship.class - [JAR]

├─ org.forester.go.GoSubset.class - [JAR]

├─ org.forester.go.GoTerm.class - [JAR]

├─ org.forester.go.GoUtils.class - [JAR]

├─ org.forester.go.GoXRef.class - [JAR]

├─ org.forester.go.Mapping.class - [JAR]

├─ org.forester.go.OBOparser.class - [JAR]

├─ org.forester.go.PfamToGoMapping.class - [JAR]

├─ org.forester.go.PfamToGoParser.class - [JAR]

├─ org.forester.go.TestGo.class - [JAR]

com.approximatrix.charting.swing

├─ com.approximatrix.charting.swing.AbstractChartPanel.class - [JAR]

├─ com.approximatrix.charting.swing.BufferedChartPanel.class - [JAR]

├─ com.approximatrix.charting.swing.ChartPanel.class - [JAR]

├─ com.approximatrix.charting.swing.ExtendedChartPanel.class - [JAR]

├─ com.approximatrix.charting.swing.InteractiveChartPanel.class - [JAR]

javax.xml.bind.attachment

├─ javax.xml.bind.attachment.AttachmentMarshaller.class - [JAR]

├─ javax.xml.bind.attachment.AttachmentUnmarshaller.class - [JAR]

javax.xml.bind.helpers

├─ javax.xml.bind.helpers.AbstractMarshallerImpl.class - [JAR]

├─ javax.xml.bind.helpers.AbstractUnmarshallerImpl.class - [JAR]

├─ javax.xml.bind.helpers.DefaultValidationEventHandler.class - [JAR]

├─ javax.xml.bind.helpers.Messages.class - [JAR]

├─ javax.xml.bind.helpers.NotIdentifiableEventImpl.class - [JAR]

├─ javax.xml.bind.helpers.ParseConversionEventImpl.class - [JAR]

├─ javax.xml.bind.helpers.PrintConversionEventImpl.class - [JAR]

├─ javax.xml.bind.helpers.ValidationEventImpl.class - [JAR]

├─ javax.xml.bind.helpers.ValidationEventLocatorImpl.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.collect

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractIndexedListIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractMapBasedMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractMapBasedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractMapEntry.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractNavigableMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractRangeSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractSequentialIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractSortedKeySortedSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractSortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractSortedSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AbstractTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.AllEqualOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ArrayListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ArrayListMultimapGwtSerializationDependencies.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ArrayTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.BaseImmutableMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.BiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.BoundType.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ByFunctionOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CartesianList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ClassToInstanceMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CollectCollectors.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CollectPreconditions.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CollectSpliterators.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Collections2.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CompactHashMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CompactHashSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CompactHashing.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CompactLinkedHashMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CompactLinkedHashSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ComparatorOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Comparators.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ComparisonChain.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.CompoundOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ComputationException.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ConcurrentHashMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ConsumingQueueIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ContiguousSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Count.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Cut.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.DenseImmutableTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.DescendingImmutableSortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.DescendingImmutableSortedSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.DescendingMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.DiscreteDomain.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EmptyContiguousSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EmptyImmutableListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EmptyImmutableSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EnumBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EnumHashBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EnumMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.EvictingQueue.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ExplicitOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredEntryMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredEntrySetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredKeyListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredKeyMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredKeySetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredMultimapValues.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FilteredSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.FluentIterable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingBlockingDeque.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingCollection.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingConcurrentMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingDeque.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingImmutableCollection.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingImmutableList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingImmutableMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingImmutableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingListIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingMapEntry.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingNavigableMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingNavigableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingObject.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingQueue.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingSortedMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingSortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingSortedSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingSortedSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ForwardingTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.GeneralRange.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.GwtTransient.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.HashBasedTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.HashBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.HashMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.HashMultimapGwtSerializationDependencies.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.HashMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Hashing.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableAsList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableBiMapFauxverideShim.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableClassToInstanceMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableCollection.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableEntry.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableEnumMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableEnumSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMapEntry.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMapEntrySet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMapKeySet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMapValues.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableMultisetGwtSerializationDependencies.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableRangeMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableRangeSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedAsList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedMapFauxverideShim.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedMultisetFauxverideShim.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableSortedSetFauxverideShim.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ImmutableTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.IndexedImmutableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Interner.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Interners.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Iterables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Iterators.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.JdkBackedImmutableBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.JdkBackedImmutableMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.JdkBackedImmutableMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.JdkBackedImmutableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.LexicographicalOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.LinkedHashMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.LinkedHashMultimapGwtSerializationDependencies.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.LinkedHashMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.LinkedListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ListMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Lists.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MapDifference.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MapMaker.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MapMakerInternalMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Maps.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MinMaxPriorityQueue.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MoreCollectors.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Multimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MultimapBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Multimaps.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Multiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Multisets.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.MutableClassToInstanceMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.NaturalOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.NullsFirstOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.NullsLastOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ObjectArrays.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Ordering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.PeekingIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Platform.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Queues.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Range.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RangeGwtSerializationDependencies.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RangeMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RangeSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularContiguousSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableAsList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableSortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableSortedSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RegularImmutableTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ReverseNaturalOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.ReverseOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.RowSortedTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Serialization.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Sets.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SingletonImmutableBiMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SingletonImmutableList.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SingletonImmutableSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SingletonImmutableTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedIterable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedIterables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedLists.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedMapDifference.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedMultisetBridge.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedMultisets.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SortedSetMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.SparseImmutableTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.StandardRowSortedTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.StandardTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Streams.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Synchronized.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Table.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TableCollectors.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.Tables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TopKSelector.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TransformedIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TransformedListIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TreeBasedTable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TreeMultimap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TreeMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TreeRangeMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TreeRangeSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.TreeTraverser.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.UnmodifiableIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.UnmodifiableListIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.UnmodifiableSortedMultiset.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.UsingToStringOrdering.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.collect.package-info.class - [JAR]

org.forester.sequence

├─ org.forester.sequence.BasicSequence.class - [JAR]

├─ org.forester.sequence.MolecularSequence.class - [JAR]

org.forester.phylogeny.iterators

├─ org.forester.phylogeny.iterators.ExternalForwardIterator.class - [JAR]

├─ org.forester.phylogeny.iterators.LevelOrderTreeIterator.class - [JAR]

├─ org.forester.phylogeny.iterators.PhylogenyNodeIterator.class - [JAR]

├─ org.forester.phylogeny.iterators.PostOrderStackObject.class - [JAR]

├─ org.forester.phylogeny.iterators.PostorderTreeIterator.class - [JAR]

├─ org.forester.phylogeny.iterators.PreorderTreeIterator.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.reflect

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.AbstractInvocationHandler.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.ClassPath.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.Element.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.ImmutableTypeToInstanceMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.Invokable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.MutableTypeToInstanceMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.Parameter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.Reflection.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.TypeCapture.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.TypeParameter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.TypeResolver.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.TypeToInstanceMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.TypeToken.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.TypeVisitor.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.Types.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.reflect.package-info.class - [JAR]

org.biojava.nbio.alignment.io

├─ org.biojava.nbio.alignment.io.StockholmConsensusAnnotation.class - [JAR]

├─ org.biojava.nbio.alignment.io.StockholmFileAnnotation.class - [JAR]

├─ org.biojava.nbio.alignment.io.StockholmFileParser.class - [JAR]

├─ org.biojava.nbio.alignment.io.StockholmResidueAnnotation.class - [JAR]

├─ org.biojava.nbio.alignment.io.StockholmSequenceAnnotation.class - [JAR]

├─ org.biojava.nbio.alignment.io.StockholmStructure.class - [JAR]

org.checkerframework.checker.signedness.qual

├─ org.checkerframework.checker.signedness.qual.PolySigned.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.Signed.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignedPositive.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignedPositiveFromUnsigned.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignednessBottom.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignednessGlb.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.UnknownSignedness.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.Unsigned.class - [JAR]

org.checkerframework.common.util.report.qual

├─ org.checkerframework.common.util.report.qual.ReportCall.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportCreation.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportInherit.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportOverride.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportReadWrite.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportUnqualified.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportUse.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportWrite.class - [JAR]

org.checkerframework.common.subtyping.qual

├─ org.checkerframework.common.subtyping.qual.Bottom.class - [JAR]

├─ org.checkerframework.common.subtyping.qual.Unqualified.class - [JAR]

org.checkerframework.dataflow.qual

├─ org.checkerframework.dataflow.qual.Deterministic.class - [JAR]

├─ org.checkerframework.dataflow.qual.Pure.class - [JAR]

├─ org.checkerframework.dataflow.qual.SideEffectFree.class - [JAR]

├─ org.checkerframework.dataflow.qual.TerminatesExecution.class - [JAR]

com.sun.xml.bind.v2.schemagen.episode

├─ com.sun.xml.bind.v2.schemagen.episode.Bindings.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.episode.Klass.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.episode.Package.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.episode.SchemaBindings.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.episode.package-info.class - [JAR]

com.google.j2objc.annotations

├─ com.google.j2objc.annotations.AutoreleasePool.class - [JAR]

├─ com.google.j2objc.annotations.J2ObjCIncompatible.class - [JAR]

├─ com.google.j2objc.annotations.LoopTranslation.class - [JAR]

├─ com.google.j2objc.annotations.ObjectiveCName.class - [JAR]

├─ com.google.j2objc.annotations.Property.class - [JAR]

├─ com.google.j2objc.annotations.ReflectionSupport.class - [JAR]

├─ com.google.j2objc.annotations.RetainedLocalRef.class - [JAR]

├─ com.google.j2objc.annotations.RetainedWith.class - [JAR]

├─ com.google.j2objc.annotations.Weak.class - [JAR]

├─ com.google.j2objc.annotations.WeakOuter.class - [JAR]

org.forester.go.etc

├─ org.forester.go.etc.MetaOntologizer.class - [JAR]

├─ org.forester.go.etc.OntologizerResult.class - [JAR]

org.forester.evoinference.parsimony

├─ org.forester.evoinference.parsimony.DolloParsimony.class - [JAR]

├─ org.forester.evoinference.parsimony.FitchParsimony.class - [JAR]

├─ org.forester.evoinference.parsimony.SankoffParsimony.class - [JAR]

com.sun.xml.bind.api.impl

├─ com.sun.xml.bind.api.impl.NameConverter.class - [JAR]

├─ com.sun.xml.bind.api.impl.NameUtil.class - [JAR]

org.forester.msa_compactor

├─ org.forester.msa_compactor.Chart.class - [JAR]

├─ org.forester.msa_compactor.GapContribution.class - [JAR]

├─ org.forester.msa_compactor.MsaCompactor.class - [JAR]

├─ org.forester.msa_compactor.MsaProperties.class - [JAR]

org.biojava.nbio.core.sequence.transcription

├─ org.biojava.nbio.core.sequence.transcription.CaseInsensitiveCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.DNAToRNATranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.Frame.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.RNAToAminoAcidTranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.Table.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.TranscriptionEngine.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.html

├─ org.biojava.nbio.adam.shaded.com.google.common.html.HtmlEscapers.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.html.package-info.class - [JAR]

org.biojava.nbio.alignment.template

├─ org.biojava.nbio.alignment.template.AbstractMatrixAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.AbstractProfileProfileAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.AbstractScorer.class - [JAR]

├─ org.biojava.nbio.alignment.template.Aligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.CallablePairwiseSequenceScorer.class - [JAR]

├─ org.biojava.nbio.alignment.template.CallableProfileProfileAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.GapPenalty.class - [JAR]

├─ org.biojava.nbio.alignment.template.GuideTreeNode.class - [JAR]

├─ org.biojava.nbio.alignment.template.HierarchicalClusterer.class - [JAR]

├─ org.biojava.nbio.alignment.template.MatrixAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.PairInProfileScorer.class - [JAR]

├─ org.biojava.nbio.alignment.template.PairwiseSequenceAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.PairwiseSequenceScorer.class - [JAR]

├─ org.biojava.nbio.alignment.template.PartitionRefiner.class - [JAR]

├─ org.biojava.nbio.alignment.template.ProfileProfileAligner.class - [JAR]

├─ org.biojava.nbio.alignment.template.ProfileProfileScorer.class - [JAR]

├─ org.biojava.nbio.alignment.template.RescoreRefiner.class - [JAR]

├─ org.biojava.nbio.alignment.template.Scorer.class - [JAR]

org.forester.archaeopteryx.tools

├─ org.forester.archaeopteryx.tools.AncestralTaxonomyInferrer.class - [JAR]

├─ org.forester.archaeopteryx.tools.Blast.class - [JAR]

├─ org.forester.archaeopteryx.tools.ImageLoader.class - [JAR]

├─ org.forester.archaeopteryx.tools.InferenceManager.class - [JAR]

├─ org.forester.archaeopteryx.tools.PhyloInferenceDialog.class - [JAR]

├─ org.forester.archaeopteryx.tools.PhylogeneticInferenceOptions.class - [JAR]

├─ org.forester.archaeopteryx.tools.PhylogeneticInferrer.class - [JAR]

├─ org.forester.archaeopteryx.tools.ProcessPool.class - [JAR]

├─ org.forester.archaeopteryx.tools.ProcessRunning.class - [JAR]

├─ org.forester.archaeopteryx.tools.RunnableProcess.class - [JAR]

├─ org.forester.archaeopteryx.tools.SequenceDataRetriver.class - [JAR]

com.google.errorprone.annotations

├─ com.google.errorprone.annotations.CanIgnoreReturnValue.class - [JAR]

├─ com.google.errorprone.annotations.CheckReturnValue.class - [JAR]

├─ com.google.errorprone.annotations.CompatibleWith.class - [JAR]

├─ com.google.errorprone.annotations.CompileTimeConstant.class - [JAR]

├─ com.google.errorprone.annotations.DoNotCall.class - [JAR]

├─ com.google.errorprone.annotations.DoNotMock.class - [JAR]

├─ com.google.errorprone.annotations.ForOverride.class - [JAR]

├─ com.google.errorprone.annotations.FormatMethod.class - [JAR]

├─ com.google.errorprone.annotations.FormatString.class - [JAR]

├─ com.google.errorprone.annotations.Immutable.class - [JAR]

├─ com.google.errorprone.annotations.IncompatibleModifiers.class - [JAR]

├─ com.google.errorprone.annotations.MustBeClosed.class - [JAR]

├─ com.google.errorprone.annotations.NoAllocation.class - [JAR]

├─ com.google.errorprone.annotations.OverridingMethodsMustInvokeSuper.class - [JAR]

├─ com.google.errorprone.annotations.RequiredModifiers.class - [JAR]

├─ com.google.errorprone.annotations.RestrictedApi.class - [JAR]

├─ com.google.errorprone.annotations.SuppressPackageLocation.class - [JAR]

├─ com.google.errorprone.annotations.Var.class - [JAR]

org.biojava.nbio.genome.homology

├─ org.biojava.nbio.genome.homology.BlastHomologyHits.class - [JAR]

├─ org.biojava.nbio.genome.homology.GFF3FromUniprotBlastHits.class - [JAR]

org.checkerframework.common.aliasing.qual

├─ org.checkerframework.common.aliasing.qual.LeakedToResult.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.MaybeAliased.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.MaybeLeaked.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.NonLeaked.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.Unique.class - [JAR]

com.approximatrix.charting.render.colorscale

├─ com.approximatrix.charting.render.colorscale.AbstractColorScale.class - [JAR]

├─ com.approximatrix.charting.render.colorscale.ColorScale.class - [JAR]

├─ com.approximatrix.charting.render.colorscale.IndexedColorScale.class - [JAR]

├─ com.approximatrix.charting.render.colorscale.SimpleColorScale.class - [JAR]

javax.xml.bind.annotation

├─ javax.xml.bind.annotation.DomHandler.class - [JAR]

├─ javax.xml.bind.annotation.W3CDomHandler.class - [JAR]

├─ javax.xml.bind.annotation.XmlAccessOrder.class - [JAR]

├─ javax.xml.bind.annotation.XmlAccessType.class - [JAR]

├─ javax.xml.bind.annotation.XmlAccessorOrder.class - [JAR]

├─ javax.xml.bind.annotation.XmlAccessorType.class - [JAR]

├─ javax.xml.bind.annotation.XmlAnyAttribute.class - [JAR]

├─ javax.xml.bind.annotation.XmlAnyElement.class - [JAR]

├─ javax.xml.bind.annotation.XmlAttachmentRef.class - [JAR]

├─ javax.xml.bind.annotation.XmlAttribute.class - [JAR]

├─ javax.xml.bind.annotation.XmlElement.class - [JAR]

├─ javax.xml.bind.annotation.XmlElementDecl.class - [JAR]

├─ javax.xml.bind.annotation.XmlElementRef.class - [JAR]

├─ javax.xml.bind.annotation.XmlElementRefs.class - [JAR]

├─ javax.xml.bind.annotation.XmlElementWrapper.class - [JAR]

├─ javax.xml.bind.annotation.XmlElements.class - [JAR]

├─ javax.xml.bind.annotation.XmlEnum.class - [JAR]

├─ javax.xml.bind.annotation.XmlEnumValue.class - [JAR]

├─ javax.xml.bind.annotation.XmlID.class - [JAR]

├─ javax.xml.bind.annotation.XmlIDREF.class - [JAR]

├─ javax.xml.bind.annotation.XmlInlineBinaryData.class - [JAR]

├─ javax.xml.bind.annotation.XmlList.class - [JAR]

├─ javax.xml.bind.annotation.XmlMimeType.class - [JAR]

├─ javax.xml.bind.annotation.XmlMixed.class - [JAR]

├─ javax.xml.bind.annotation.XmlNs.class - [JAR]

├─ javax.xml.bind.annotation.XmlNsForm.class - [JAR]

├─ javax.xml.bind.annotation.XmlRegistry.class - [JAR]

├─ javax.xml.bind.annotation.XmlRootElement.class - [JAR]

├─ javax.xml.bind.annotation.XmlSchema.class - [JAR]

├─ javax.xml.bind.annotation.XmlSchemaType.class - [JAR]

├─ javax.xml.bind.annotation.XmlSchemaTypes.class - [JAR]

├─ javax.xml.bind.annotation.XmlSeeAlso.class - [JAR]

├─ javax.xml.bind.annotation.XmlTransient.class - [JAR]

├─ javax.xml.bind.annotation.XmlType.class - [JAR]

├─ javax.xml.bind.annotation.XmlValue.class - [JAR]

org.biojava.nbio.genome.query

├─ org.biojava.nbio.genome.query.BlastXMLQuery.class - [JAR]

├─ org.biojava.nbio.genome.query.OutputHitsGFF.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.hash

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.AbstractByteHasher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.AbstractCompositeHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.AbstractHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.AbstractHasher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.AbstractNonStreamingHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.AbstractStreamingHasher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.BloomFilter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.BloomFilterStrategies.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.ChecksumHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Crc32cHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.FarmHashFingerprint64.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Funnel.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Funnels.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.HashCode.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.HashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Hasher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Hashing.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.HashingInputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.HashingOutputStream.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.ImmutableSupplier.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Java8Compatibility.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.LittleEndianByteArray.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.LongAddable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.LongAddables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.LongAdder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.MacHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.MessageDigestHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Murmur3_128HashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Murmur3_32HashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.PrimitiveSink.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.SipHashFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.Striped64.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.hash.package-info.class - [JAR]

org.checkerframework.checker.optional.qual

├─ org.checkerframework.checker.optional.qual.MaybePresent.class - [JAR]

├─ org.checkerframework.checker.optional.qual.PolyPresent.class - [JAR]

├─ org.checkerframework.checker.optional.qual.Present.class - [JAR]

org.checkerframework.checker.i18nformatter

├─ org.checkerframework.checker.i18nformatter.I18nFormatUtil.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.math

├─ org.biojava.nbio.adam.shaded.com.google.common.math.BigDecimalMath.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.BigIntegerMath.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.DoubleMath.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.DoubleUtils.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.IntMath.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.LinearTransformation.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.LongMath.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.MathPreconditions.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.PairedStats.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.PairedStatsAccumulator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.Quantiles.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.Stats.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.StatsAccumulator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.ToDoubleRounder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.math.package-info.class - [JAR]

org.biojava.nbio.core.sequence

├─ org.biojava.nbio.core.sequence.AccessionID.class - [JAR]

├─ org.biojava.nbio.core.sequence.BasicSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.CDSComparator.class - [JAR]

├─ org.biojava.nbio.core.sequence.CDSSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.ChromosomeSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.DNASequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.DataSource.class - [JAR]

├─ org.biojava.nbio.core.sequence.ExonComparator.class - [JAR]

├─ org.biojava.nbio.core.sequence.ExonSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.GeneSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.IntronSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.MultipleSequenceAlignment.class - [JAR]

├─ org.biojava.nbio.core.sequence.ProteinSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.RNASequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.SequenceComparator.class - [JAR]

├─ org.biojava.nbio.core.sequence.SequenceOptimizationHints.class - [JAR]

├─ org.biojava.nbio.core.sequence.StartCodonSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.StopCodonSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.Strand.class - [JAR]

├─ org.biojava.nbio.core.sequence.TaxonomyID.class - [JAR]

├─ org.biojava.nbio.core.sequence.TranscriptSequence.class - [JAR]

org.biojava.nbio.core.sequence.io.embl

├─ org.biojava.nbio.core.sequence.io.embl.EmblId.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.embl.EmblReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.embl.EmblRecord.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.embl.EmblReference.class - [JAR]

org.forester.io.parsers.phyloxml

├─ org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException.class - [JAR]

├─ org.forester.io.parsers.phyloxml.PhyloXmlException.class - [JAR]

├─ org.forester.io.parsers.phyloxml.PhyloXmlHandler.class - [JAR]

├─ org.forester.io.parsers.phyloxml.PhyloXmlMapping.class - [JAR]

├─ org.forester.io.parsers.phyloxml.PhyloXmlParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.PhyloXmlUtil.class - [JAR]

├─ org.forester.io.parsers.phyloxml.XmlElement.class - [JAR]

org.checkerframework.checker.i18nformatter.qual

├─ org.checkerframework.checker.i18nformatter.qual.I18nChecksFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nConversionCategory.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nFormatBottom.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nFormatFor.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nInvalidFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nMakeFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nUnknownFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nValidFormat.class - [JAR]

org.forester.ws.wabi

├─ org.forester.ws.wabi.RestUtil.class - [JAR]

├─ org.forester.ws.wabi.TxSearch.class - [JAR]

├─ org.forester.ws.wabi.WabiTools.class - [JAR]

org.checkerframework.checker.signedness

├─ org.checkerframework.checker.signedness.SignednessUtil.class - [JAR]

├─ org.checkerframework.checker.signedness.SignednessUtilExtra.class - [JAR]

org.biojava.nbio.core.sequence.io.template

├─ org.biojava.nbio.core.sequence.io.template.FastaHeaderFormatInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.GenbankHeaderFormatInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.SequenceCreatorInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.SequenceHeaderParserInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.SequenceParserInterface.class - [JAR]

com.sun.istack.localization

├─ com.sun.istack.localization.Localizable.class - [JAR]

├─ com.sun.istack.localization.LocalizableMessage.class - [JAR]

├─ com.sun.istack.localization.LocalizableMessageFactory.class - [JAR]

├─ com.sun.istack.localization.Localizer.class - [JAR]

├─ com.sun.istack.localization.NullLocalizable.class - [JAR]

org.checkerframework.checker.nullness.qual

├─ org.checkerframework.checker.nullness.qual.AssertNonNullIfNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresKeyFor.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresKeyForIf.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresNonNullIf.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.KeyFor.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.KeyForBottom.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.MonotonicNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.NonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.Nullable.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.PolyKeyFor.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.PolyNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.RequiresNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.UnknownKeyFor.class - [JAR]

org.forester.io.parsers.phyloxml.data

├─ org.forester.io.parsers.phyloxml.data.AccessionParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.AnnotationParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.BinaryCharactersParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.BranchWidthParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.ColorParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.ConfidenceParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.DateParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.DistributionParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.DomainArchitectureParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.EventParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.IdentifierParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.PhylogenyDataPhyloXmlParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.PointParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.PolygonParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.PropertyParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.ProteinDomainParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.ReferenceParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.SequenceParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.SequenceRelationParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.TaxonomyParser.class - [JAR]

├─ org.forester.io.parsers.phyloxml.data.UriParser.class - [JAR]

com.approximatrix.charting.coordsystem

├─ com.approximatrix.charting.coordsystem.AbstractCoordSystem.class - [JAR]

├─ com.approximatrix.charting.coordsystem.BoxCoordSystem.class - [JAR]

├─ com.approximatrix.charting.coordsystem.ClassicCoordSystem.class - [JAR]

├─ com.approximatrix.charting.coordsystem.ClassicCoordSystemUtilities.class - [JAR]

├─ com.approximatrix.charting.coordsystem.CoordSystem.class - [JAR]

├─ com.approximatrix.charting.coordsystem.CoordSystemUtilities.class - [JAR]

├─ com.approximatrix.charting.coordsystem.InvisibleCoordSystem.class - [JAR]

com.approximatrix.charting.render

├─ com.approximatrix.charting.render.AbstractChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.AbstractRenderer.class - [JAR]

├─ com.approximatrix.charting.render.BarChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.ChartRenderingHints.class - [JAR]

├─ com.approximatrix.charting.render.ImageRenderer.class - [JAR]

├─ com.approximatrix.charting.render.InterpolationChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.LineChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.MultiScatterChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.PieChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.PlotChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.RadarChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.Renderer.class - [JAR]

├─ com.approximatrix.charting.render.RowColorModel.class - [JAR]

├─ com.approximatrix.charting.render.ScatterChartRenderer.class - [JAR]

├─ com.approximatrix.charting.render.StackedBarChartRenderer.class - [JAR]

org.checkerframework.checker.regex

├─ org.checkerframework.checker.regex.RegexUtil.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.xml

├─ org.biojava.nbio.adam.shaded.com.google.common.xml.XmlEscapers.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.xml.package-info.class - [JAR]

org.biojava.nbio.core.sequence.features

├─ org.biojava.nbio.core.sequence.features.AbstractFeature.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.DBReferenceInfo.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.DatabaseReferenceInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeatureDbReferenceInfo.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeatureInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeatureRetriever.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeaturesKeyWordInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.Qualifier.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.QualityFeature.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.QuantityFeature.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.TextFeature.class - [JAR]

org.forester.evoinference.distance

├─ org.forester.evoinference.distance.NeighborJoining.class - [JAR]

├─ org.forester.evoinference.distance.NeighborJoiningF.class - [JAR]

├─ org.forester.evoinference.distance.NeighborJoiningR.class - [JAR]

├─ org.forester.evoinference.distance.PairwiseDistanceCalculator.class - [JAR]

├─ org.forester.evoinference.distance.Sarray.class - [JAR]

├─ org.forester.evoinference.distance.Sset.class - [JAR]

org.forester.io.writers

├─ org.forester.io.writers.PhyloXmlNodeWriter.class - [JAR]

├─ org.forester.io.writers.PhylogenyWriter.class - [JAR]

├─ org.forester.io.writers.SequenceWriter.class - [JAR]

org.forester.datastructures

├─ org.forester.datastructures.IntMatrix.class - [JAR]

├─ org.forester.datastructures.Queue.class - [JAR]

com.sun.xml.bind.v2.schemagen.xmlschema

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Annotated.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Annotation.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Any.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Appinfo.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.AttrDecls.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.AttributeType.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ComplexContent.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ComplexExtension.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ComplexRestriction.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ComplexType.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ComplexTypeHost.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ComplexTypeModel.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ContentModelContainer.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Documentation.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Element.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ExplicitGroup.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.ExtensionType.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.FixedOrDefault.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Import.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.List.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.LocalAttribute.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.LocalElement.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.NestedParticle.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.NoFixedFacet.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Occurs.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Particle.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Redefinable.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Schema.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SchemaTop.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleContent.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleDerivation.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleExtension.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleRestriction.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleRestrictionModel.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleType.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.SimpleTypeHost.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.TopLevelAttribute.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.TopLevelElement.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.TypeDefParticle.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.TypeHost.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Union.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.Wildcard.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.xmlschema.package-info.class - [JAR]

org.biojava.nbio.core.alignment

├─ org.biojava.nbio.core.alignment.SimpleAlignedSequence.class - [JAR]

├─ org.biojava.nbio.core.alignment.SimpleProfile.class - [JAR]

├─ org.biojava.nbio.core.alignment.SimpleProfilePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.SimpleSequencePair.class - [JAR]

com.google.inject.internal.aop

├─ com.google.inject.internal.aop.AbstractGlueGenerator.class - [JAR]

├─ com.google.inject.internal.aop.BytecodeTasks.class - [JAR]

├─ com.google.inject.internal.aop.ChildClassDefiner.class - [JAR]

├─ com.google.inject.internal.aop.ClassBuilding.class - [JAR]

├─ com.google.inject.internal.aop.ClassDefiner.class - [JAR]

├─ com.google.inject.internal.aop.ClassDefining.class - [JAR]

├─ com.google.inject.internal.aop.Enhancer.class - [JAR]

├─ com.google.inject.internal.aop.EnhancerBuilderImpl.class - [JAR]

├─ com.google.inject.internal.aop.FastClass.class - [JAR]

├─ com.google.inject.internal.aop.GlueException.class - [JAR]

├─ com.google.inject.internal.aop.ImmutableStringTrie.class - [JAR]

├─ com.google.inject.internal.aop.MethodPartition.class - [JAR]

├─ com.google.inject.internal.aop.UnsafeClassDefiner.class - [JAR]

com.sun.xml.bind.v2.model.runtime

├─ com.sun.xml.bind.v2.model.runtime.RuntimeArrayInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeAttributePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeBuiltinLeafInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeClassInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeElement.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeElementInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeElementPropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeEnumLeafInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeLeafInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeMapPropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeNonElement.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeNonElementRef.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeReferencePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeTypeInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeTypeInfoSet.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeTypeRef.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.RuntimeValuePropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.runtime.package-info.class - [JAR]

com.approximatrix.charting.model

├─ com.approximatrix.charting.model.AbstractChartDataModel.class - [JAR]

├─ com.approximatrix.charting.model.ChartDataModel.class - [JAR]

├─ com.approximatrix.charting.model.ChartDataModelConstraints.class - [JAR]

├─ com.approximatrix.charting.model.DataSet.class - [JAR]

├─ com.approximatrix.charting.model.DefaultChartDataModel.class - [JAR]

├─ com.approximatrix.charting.model.DefaultChartDataModelConstraints.class - [JAR]

├─ com.approximatrix.charting.model.DefaultDataSet.class - [JAR]

├─ com.approximatrix.charting.model.EditableChartDataModel.class - [JAR]

├─ com.approximatrix.charting.model.EditableDataSet.class - [JAR]

├─ com.approximatrix.charting.model.IntegratedImageModel.class - [JAR]

├─ com.approximatrix.charting.model.JDBCPlotter.class - [JAR]

├─ com.approximatrix.charting.model.JDBCPlotterException.class - [JAR]

├─ com.approximatrix.charting.model.MultiScatterDataModel.class - [JAR]

├─ com.approximatrix.charting.model.MultiScatterDataModelConstraints.class - [JAR]

├─ com.approximatrix.charting.model.ObjectChartDataModel.class - [JAR]

├─ com.approximatrix.charting.model.ScatterDataModel.class - [JAR]

├─ com.approximatrix.charting.model.StackedChartDataModelConstraints.class - [JAR]

org.forester.io.parsers.tol

├─ org.forester.io.parsers.tol.TolParser.class - [JAR]

├─ org.forester.io.parsers.tol.TolXmlHandler.class - [JAR]

├─ org.forester.io.parsers.tol.TolXmlMapping.class - [JAR]

org.apache.commons.codec.language

├─ org.apache.commons.codec.language.AbstractCaverphone.class - [JAR]

├─ org.apache.commons.codec.language.Caverphone.class - [JAR]

├─ org.apache.commons.codec.language.Caverphone1.class - [JAR]

├─ org.apache.commons.codec.language.Caverphone2.class - [JAR]

├─ org.apache.commons.codec.language.ColognePhonetic.class - [JAR]

├─ org.apache.commons.codec.language.DaitchMokotoffSoundex.class - [JAR]

├─ org.apache.commons.codec.language.DoubleMetaphone.class - [JAR]

├─ org.apache.commons.codec.language.MatchRatingApproachEncoder.class - [JAR]

├─ org.apache.commons.codec.language.Metaphone.class - [JAR]

├─ org.apache.commons.codec.language.Nysiis.class - [JAR]

├─ org.apache.commons.codec.language.RefinedSoundex.class - [JAR]

├─ org.apache.commons.codec.language.Soundex.class - [JAR]

├─ org.apache.commons.codec.language.SoundexUtils.class - [JAR]

org.checkerframework.checker.propkey.qual

├─ org.checkerframework.checker.propkey.qual.PropertyKey.class - [JAR]

├─ org.checkerframework.checker.propkey.qual.PropertyKeyBottom.class - [JAR]

├─ org.checkerframework.checker.propkey.qual.UnknownPropertyKey.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.escape

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.ArrayBasedCharEscaper.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.ArrayBasedEscaperMap.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.ArrayBasedUnicodeEscaper.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.CharEscaper.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.CharEscaperBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.Escaper.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.Escapers.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.Platform.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.UnicodeEscaper.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.escape.package-info.class - [JAR]

org.checkerframework.checker.initialization.qual

├─ org.checkerframework.checker.initialization.qual.FBCBottom.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.Initialized.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.NotOnlyInitialized.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.UnderInitialization.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.UnknownInitialization.class - [JAR]

org.bdgenomics.convert.bdgenomics

├─ org.bdgenomics.convert.bdgenomics.BdgenomicsModule.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.DbxrefToString.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.ImpactToString.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.OntologyTermToString.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.ReadToSequence.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.ReadToSlice.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.SequenceToRead.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.SequenceToSlice.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.SliceToRead.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.SliceToSequence.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StrandToString.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StringToDbxref.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StringToImpact.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StringToOntologyTerm.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StringToStrand.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StringToTranscriptEffect.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.StringToVariantAnnotationMessage.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.TranscriptEffectToString.class - [JAR]

├─ org.bdgenomics.convert.bdgenomics.VariantAnnotationMessageToString.class - [JAR]

org.biojava.nbio.genome.util

├─ org.biojava.nbio.genome.util.ChromosomeMappingTools.class - [JAR]

├─ org.biojava.nbio.genome.util.ProteinMappingTools.class - [JAR]

├─ org.biojava.nbio.genome.util.SplitFasta.class - [JAR]

org.apache.commons.codec.binary

├─ org.apache.commons.codec.binary.Base16.class - [JAR]

├─ org.apache.commons.codec.binary.Base16InputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base16OutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base32.class - [JAR]

├─ org.apache.commons.codec.binary.Base32InputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base32OutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base64.class - [JAR]

├─ org.apache.commons.codec.binary.Base64InputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base64OutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.BaseNCodec.class - [JAR]

├─ org.apache.commons.codec.binary.BaseNCodecInputStream.class - [JAR]

├─ org.apache.commons.codec.binary.BaseNCodecOutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.BinaryCodec.class - [JAR]

├─ org.apache.commons.codec.binary.CharSequenceUtils.class - [JAR]

├─ org.apache.commons.codec.binary.Hex.class - [JAR]

├─ org.apache.commons.codec.binary.StringUtils.class - [JAR]

org.biojava.nbio.genome.io.fastq

├─ org.biojava.nbio.genome.io.fastq.AbstractFastqReader.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.AbstractFastqWriter.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.Fastq.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.FastqBuilder.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.FastqParser.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.FastqReader.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.FastqTools.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.FastqVariant.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.FastqWriter.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.IlluminaFastqReader.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.IlluminaFastqWriter.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.ParseListener.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.SangerFastqReader.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.SangerFastqWriter.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.SolexaFastqReader.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.SolexaFastqWriter.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.StreamListener.class - [JAR]

├─ org.biojava.nbio.genome.io.fastq.StreamingFastqParser.class - [JAR]

org.biojava.nbio.genome.parsers.gff

├─ org.biojava.nbio.genome.parsers.gff.Feature.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.FeatureHelper.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.FeatureI.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.FeatureList.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.GCStats.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.GFF3Reader.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.GFF3Writer.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.GeneIDGFF2Reader.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.GeneMarkGTFReader.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.LocIterator.class - [JAR]

├─ org.biojava.nbio.genome.parsers.gff.Location.class - [JAR]

org.aopalliance.intercept

├─ org.aopalliance.intercept.ConstructorInterceptor.class - [JAR]

├─ org.aopalliance.intercept.ConstructorInvocation.class - [JAR]

├─ org.aopalliance.intercept.Interceptor.class - [JAR]

├─ org.aopalliance.intercept.Invocation.class - [JAR]

├─ org.aopalliance.intercept.Joinpoint.class - [JAR]

├─ org.aopalliance.intercept.MethodInterceptor.class - [JAR]

├─ org.aopalliance.intercept.MethodInvocation.class - [JAR]

org.biojava.nbio.core.util

├─ org.biojava.nbio.core.util.CRC64Checksum.class - [JAR]

├─ org.biojava.nbio.core.util.ConcurrencyTools.class - [JAR]

├─ org.biojava.nbio.core.util.Equals.class - [JAR]

├─ org.biojava.nbio.core.util.FileDownloadUtils.class - [JAR]

├─ org.biojava.nbio.core.util.FlatFileCache.class - [JAR]

├─ org.biojava.nbio.core.util.Hashcoder.class - [JAR]

├─ org.biojava.nbio.core.util.InputStreamProvider.class - [JAR]

├─ org.biojava.nbio.core.util.PrettyXMLWriter.class - [JAR]

├─ org.biojava.nbio.core.util.SequenceTools.class - [JAR]

├─ org.biojava.nbio.core.util.SingleLinkageClusterer.class - [JAR]

├─ org.biojava.nbio.core.util.SoftHashMap.class - [JAR]

├─ org.biojava.nbio.core.util.StringManipulationHelper.class - [JAR]

├─ org.biojava.nbio.core.util.UncompressInputStream.class - [JAR]

├─ org.biojava.nbio.core.util.XMLHelper.class - [JAR]

├─ org.biojava.nbio.core.util.XMLWriter.class - [JAR]

com.google.inject.spi

├─ com.google.inject.spi.BindingScopingVisitor.class - [JAR]

├─ com.google.inject.spi.BindingSourceRestriction.class - [JAR]

├─ com.google.inject.spi.BindingTargetVisitor.class - [JAR]

├─ com.google.inject.spi.ConstructorBinding.class - [JAR]

├─ com.google.inject.spi.ConvertedConstantBinding.class - [JAR]

├─ com.google.inject.spi.DefaultBindingScopingVisitor.class - [JAR]

├─ com.google.inject.spi.DefaultBindingTargetVisitor.class - [JAR]

├─ com.google.inject.spi.DefaultElementVisitor.class - [JAR]

├─ com.google.inject.spi.Dependency.class - [JAR]

├─ com.google.inject.spi.DisableCircularProxiesOption.class - [JAR]

├─ com.google.inject.spi.Element.class - [JAR]

├─ com.google.inject.spi.ElementSource.class - [JAR]

├─ com.google.inject.spi.ElementVisitor.class - [JAR]

├─ com.google.inject.spi.Elements.class - [JAR]

├─ com.google.inject.spi.ErrorDetail.class - [JAR]

├─ com.google.inject.spi.ExposedBinding.class - [JAR]

├─ com.google.inject.spi.HasDependencies.class - [JAR]

├─ com.google.inject.spi.InjectionListener.class - [JAR]

├─ com.google.inject.spi.InjectionPoint.class - [JAR]

├─ com.google.inject.spi.InjectionRequest.class - [JAR]

├─ com.google.inject.spi.InstanceBinding.class - [JAR]

├─ com.google.inject.spi.InterceptorBinding.class - [JAR]

├─ com.google.inject.spi.LinkedKeyBinding.class - [JAR]

├─ com.google.inject.spi.MembersInjectorLookup.class - [JAR]

├─ com.google.inject.spi.Message.class - [JAR]

├─ com.google.inject.spi.ModuleAnnotatedMethodScanner.class - [JAR]

├─ com.google.inject.spi.ModuleAnnotatedMethodScannerBinding.class - [JAR]

├─ com.google.inject.spi.ModuleSource.class - [JAR]

├─ com.google.inject.spi.PrivateElements.class - [JAR]

├─ com.google.inject.spi.ProviderBinding.class - [JAR]

├─ com.google.inject.spi.ProviderInstanceBinding.class - [JAR]

├─ com.google.inject.spi.ProviderKeyBinding.class - [JAR]

├─ com.google.inject.spi.ProviderLookup.class - [JAR]

├─ com.google.inject.spi.ProviderWithDependencies.class - [JAR]

├─ com.google.inject.spi.ProviderWithExtensionVisitor.class - [JAR]

├─ com.google.inject.spi.ProvidesMethodBinding.class - [JAR]

├─ com.google.inject.spi.ProvidesMethodTargetVisitor.class - [JAR]

├─ com.google.inject.spi.ProvisionListener.class - [JAR]

├─ com.google.inject.spi.ProvisionListenerBinding.class - [JAR]

├─ com.google.inject.spi.RequireAtInjectOnConstructorsOption.class - [JAR]

├─ com.google.inject.spi.RequireExactBindingAnnotationsOption.class - [JAR]

├─ com.google.inject.spi.RequireExplicitBindingsOption.class - [JAR]

├─ com.google.inject.spi.ScopeBinding.class - [JAR]

├─ com.google.inject.spi.StaticInjectionRequest.class - [JAR]

├─ com.google.inject.spi.Toolable.class - [JAR]

├─ com.google.inject.spi.TypeConverter.class - [JAR]

├─ com.google.inject.spi.TypeConverterBinding.class - [JAR]

├─ com.google.inject.spi.TypeEncounter.class - [JAR]

├─ com.google.inject.spi.TypeListener.class - [JAR]

├─ com.google.inject.spi.TypeListenerBinding.class - [JAR]

├─ com.google.inject.spi.UntargettedBinding.class - [JAR]

org.biojava.nbio.core.sequence.location.template

├─ org.biojava.nbio.core.sequence.location.template.AbstractLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.template.AccesionedLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.template.Location.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.template.Point.class - [JAR]

org.checkerframework.checker.index.qual

├─ org.checkerframework.checker.index.qual.EnsuresLTLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.EnsuresLTLengthOfIf.class - [JAR]

├─ org.checkerframework.checker.index.qual.GTENegativeOne.class - [JAR]

├─ org.checkerframework.checker.index.qual.HasSubsequence.class - [JAR]

├─ org.checkerframework.checker.index.qual.IndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.IndexOrHigh.class - [JAR]

├─ org.checkerframework.checker.index.qual.IndexOrLow.class - [JAR]

├─ org.checkerframework.checker.index.qual.LTEqLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LTLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LTOMLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LessThan.class - [JAR]

├─ org.checkerframework.checker.index.qual.LessThanBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.LessThanUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.LowerBoundBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.LowerBoundUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.NegativeIndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.NonNegative.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyIndex.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyLength.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyLowerBound.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolySameLen.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyUpperBound.class - [JAR]

├─ org.checkerframework.checker.index.qual.Positive.class - [JAR]

├─ org.checkerframework.checker.index.qual.SameLen.class - [JAR]

├─ org.checkerframework.checker.index.qual.SameLenBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.SameLenUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.SearchIndexBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.SearchIndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.SearchIndexUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.SubstringIndexBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.SubstringIndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.SubstringIndexUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.UpperBoundBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.UpperBoundUnknown.class - [JAR]

org.forester.io.parsers.nexus

├─ org.forester.io.parsers.nexus.NexusBinaryStatesMatrixParser.class - [JAR]

├─ org.forester.io.parsers.nexus.NexusCharactersParser.class - [JAR]

├─ org.forester.io.parsers.nexus.NexusConstants.class - [JAR]

├─ org.forester.io.parsers.nexus.NexusFormatException.class - [JAR]

├─ org.forester.io.parsers.nexus.NexusPhylogeniesParser.class - [JAR]

├─ org.forester.io.parsers.nexus.PaupLogParser.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.primitives

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Booleans.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Bytes.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Chars.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Doubles.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.DoublesMethodsForWeb.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Floats.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.FloatsMethodsForWeb.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.ImmutableDoubleArray.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.ImmutableIntArray.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.ImmutableLongArray.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Ints.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.IntsMethodsForWeb.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Longs.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.ParseRequest.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Platform.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Primitives.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.Shorts.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.ShortsMethodsForWeb.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.SignedBytes.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.UnsignedBytes.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.UnsignedInteger.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.UnsignedInts.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.UnsignedLong.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.UnsignedLongs.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.primitives.package-info.class - [JAR]

com.google.inject.name

├─ com.google.inject.name.Named.class - [JAR]

├─ com.google.inject.name.NamedImpl.class - [JAR]

├─ com.google.inject.name.Names.class - [JAR]

org.forester.evoinference.tools

├─ org.forester.evoinference.tools.BootstrapResampler.class - [JAR]

org.biojava.nbio.core.sequence.template

├─ org.biojava.nbio.core.sequence.template.AbstractCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractCompoundTranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.Accessioned.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.ComplementCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.Compound.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.CompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.CompoundTranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.LightweightProfile.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.ProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.Sequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceMixin.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceProxyView.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceView.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.cache

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.AbstractCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.AbstractLoadingCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.Cache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.CacheBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.CacheBuilderSpec.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.CacheLoader.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.CacheStats.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.ForwardingCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.ForwardingLoadingCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.LoadingCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.LocalCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.LongAddable.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.LongAddables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.LongAdder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.ReferenceEntry.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.RemovalCause.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.RemovalListener.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.RemovalListeners.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.RemovalNotification.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.Striped64.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.Weigher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.cache.package-info.class - [JAR]

com.google.inject.matcher

├─ com.google.inject.matcher.AbstractMatcher.class - [JAR]

├─ com.google.inject.matcher.Matcher.class - [JAR]

├─ com.google.inject.matcher.Matchers.class - [JAR]

com.sun.xml.bind.marshaller

├─ com.sun.xml.bind.marshaller.CharacterEscapeHandler.class - [JAR]

├─ com.sun.xml.bind.marshaller.DataWriter.class - [JAR]

├─ com.sun.xml.bind.marshaller.DumbEscapeHandler.class - [JAR]

├─ com.sun.xml.bind.marshaller.Messages.class - [JAR]

├─ com.sun.xml.bind.marshaller.MinimumEscapeHandler.class - [JAR]

├─ com.sun.xml.bind.marshaller.NamespacePrefixMapper.class - [JAR]

├─ com.sun.xml.bind.marshaller.NioEscapeHandler.class - [JAR]

├─ com.sun.xml.bind.marshaller.NoEscapeHandler.class - [JAR]

├─ com.sun.xml.bind.marshaller.SAX2DOMEx.class - [JAR]

├─ com.sun.xml.bind.marshaller.XMLWriter.class - [JAR]

org.checkerframework.common.initializedfields.qual

├─ org.checkerframework.common.initializedfields.qual.EnsuresInitializedFields.class - [JAR]

├─ org.checkerframework.common.initializedfields.qual.InitializedFields.class - [JAR]

├─ org.checkerframework.common.initializedfields.qual.InitializedFieldsBottom.class - [JAR]

├─ org.checkerframework.common.initializedfields.qual.PolyInitializedFields.class - [JAR]

com.google.inject.internal

├─ com.google.inject.internal.AbstractBindingBuilder.class - [JAR]

├─ com.google.inject.internal.AbstractBindingProcessor.class - [JAR]

├─ com.google.inject.internal.AbstractProcessor.class - [JAR]

├─ com.google.inject.internal.Annotations.class - [JAR]

├─ com.google.inject.internal.BindingAlreadySetError.class - [JAR]

├─ com.google.inject.internal.BindingBuilder.class - [JAR]

├─ com.google.inject.internal.BindingImpl.class - [JAR]

├─ com.google.inject.internal.BindingProcessor.class - [JAR]

├─ com.google.inject.internal.BoundProviderFactory.class - [JAR]

├─ com.google.inject.internal.BytecodeGen.class - [JAR]

├─ com.google.inject.internal.ChildBindingAlreadySetError.class - [JAR]

├─ com.google.inject.internal.ConstantBindingBuilderImpl.class - [JAR]

├─ com.google.inject.internal.ConstantFactory.class - [JAR]

├─ com.google.inject.internal.ConstructionContext.class - [JAR]

├─ com.google.inject.internal.ConstructionProxy.class - [JAR]

├─ com.google.inject.internal.ConstructionProxyFactory.class - [JAR]

├─ com.google.inject.internal.ConstructorBindingImpl.class - [JAR]

├─ com.google.inject.internal.ConstructorInjector.class - [JAR]

├─ com.google.inject.internal.ConstructorInjectorStore.class - [JAR]

├─ com.google.inject.internal.CreationListener.class - [JAR]

├─ com.google.inject.internal.CycleDetectingLock.class - [JAR]

├─ com.google.inject.internal.DeclaredMembers.class - [JAR]

├─ com.google.inject.internal.DefaultConstructionProxyFactory.class - [JAR]

├─ com.google.inject.internal.DeferredLookups.class - [JAR]

├─ com.google.inject.internal.DelayedInitialize.class - [JAR]

├─ com.google.inject.internal.DelegatingInvocationHandler.class - [JAR]

├─ com.google.inject.internal.DuplicateElementError.class - [JAR]

├─ com.google.inject.internal.DuplicateMapKeyError.class - [JAR]

├─ com.google.inject.internal.Element.class - [JAR]

├─ com.google.inject.internal.EncounterImpl.class - [JAR]

├─ com.google.inject.internal.ErrorFormatter.class - [JAR]

├─ com.google.inject.internal.ErrorHandler.class - [JAR]

├─ com.google.inject.internal.ErrorId.class - [JAR]

├─ com.google.inject.internal.Errors.class - [JAR]

├─ com.google.inject.internal.ErrorsException.class - [JAR]

├─ com.google.inject.internal.ExposedBindingImpl.class - [JAR]

├─ com.google.inject.internal.ExposedKeyFactory.class - [JAR]

├─ com.google.inject.internal.ExposureBuilder.class - [JAR]

├─ com.google.inject.internal.FactoryProxy.class - [JAR]

├─ com.google.inject.internal.FailableCache.class - [JAR]

├─ com.google.inject.internal.GenericErrorDetail.class - [JAR]

├─ com.google.inject.internal.GuiceInternal.class - [JAR]

├─ com.google.inject.internal.Indexer.class - [JAR]

├─ com.google.inject.internal.Initializable.class - [JAR]

├─ com.google.inject.internal.Initializables.class - [JAR]

├─ com.google.inject.internal.Initializer.class - [JAR]

├─ com.google.inject.internal.InjectionRequestProcessor.class - [JAR]

├─ com.google.inject.internal.InjectorBindingData.class - [JAR]

├─ com.google.inject.internal.InjectorImpl.class - [JAR]

├─ com.google.inject.internal.InjectorJitBindingData.class - [JAR]

├─ com.google.inject.internal.InjectorOptionsProcessor.class - [JAR]

├─ com.google.inject.internal.InjectorShell.class - [JAR]

├─ com.google.inject.internal.InstanceBindingImpl.class - [JAR]

├─ com.google.inject.internal.InterceptorBindingProcessor.class - [JAR]

├─ com.google.inject.internal.InterceptorStackCallback.class - [JAR]

├─ com.google.inject.internal.InternalContext.class - [JAR]

├─ com.google.inject.internal.InternalErrorDetail.class - [JAR]

├─ com.google.inject.internal.InternalFactory.class - [JAR]

├─ com.google.inject.internal.InternalFactoryToInitializableAdapter.class - [JAR]

├─ com.google.inject.internal.InternalFactoryToProviderAdapter.class - [JAR]

├─ com.google.inject.internal.InternalFlags.class - [JAR]

├─ com.google.inject.internal.InternalInjectorCreator.class - [JAR]

├─ com.google.inject.internal.InternalProviderInstanceBindingImpl.class - [JAR]

├─ com.google.inject.internal.InternalProvisionException.class - [JAR]

├─ com.google.inject.internal.KotlinSupport.class - [JAR]

├─ com.google.inject.internal.KotlinSupportInterface.class - [JAR]

├─ com.google.inject.internal.LinkedBindingImpl.class - [JAR]

├─ com.google.inject.internal.LinkedProviderBindingImpl.class - [JAR]

├─ com.google.inject.internal.ListenerBindingProcessor.class - [JAR]

├─ com.google.inject.internal.LookupProcessor.class - [JAR]

├─ com.google.inject.internal.Lookups.class - [JAR]

├─ com.google.inject.internal.MembersInjectorImpl.class - [JAR]

├─ com.google.inject.internal.MembersInjectorStore.class - [JAR]

├─ com.google.inject.internal.MessageProcessor.class - [JAR]

├─ com.google.inject.internal.Messages.class - [JAR]

├─ com.google.inject.internal.MethodAspect.class - [JAR]

├─ com.google.inject.internal.MissingConstructorError.class - [JAR]

├─ com.google.inject.internal.MissingImplementationError.class - [JAR]

├─ com.google.inject.internal.MissingImplementationErrorHints.class - [JAR]

├─ com.google.inject.internal.ModuleAnnotatedMethodScannerProcessor.class - [JAR]

├─ com.google.inject.internal.MoreTypes.class - [JAR]

├─ com.google.inject.internal.Nullability.class - [JAR]

├─ com.google.inject.internal.PackageNameCompressor.class - [JAR]

├─ com.google.inject.internal.PrivateElementProcessor.class - [JAR]

├─ com.google.inject.internal.PrivateElementsImpl.class - [JAR]

├─ com.google.inject.internal.ProcessedBindingData.class - [JAR]

├─ com.google.inject.internal.ProvidedByInternalFactory.class - [JAR]

├─ com.google.inject.internal.ProviderInstanceBindingImpl.class - [JAR]

├─ com.google.inject.internal.ProviderInternalFactory.class - [JAR]

├─ com.google.inject.internal.ProviderMethod.class - [JAR]

├─ com.google.inject.internal.ProviderMethodsModule.class - [JAR]

├─ com.google.inject.internal.ProviderToInternalFactoryAdapter.class - [JAR]

├─ com.google.inject.internal.ProvidesMethodScanner.class - [JAR]

├─ com.google.inject.internal.ProvisionListenerCallbackStore.class - [JAR]

├─ com.google.inject.internal.ProvisionListenerStackCallback.class - [JAR]

├─ com.google.inject.internal.ProxyFactory.class - [JAR]

├─ com.google.inject.internal.RealElement.class - [JAR]

├─ com.google.inject.internal.RealMapBinder.class - [JAR]

├─ com.google.inject.internal.RealMultibinder.class - [JAR]

├─ com.google.inject.internal.RealOptionalBinder.class - [JAR]

├─ com.google.inject.internal.ScopeBindingProcessor.class - [JAR]

├─ com.google.inject.internal.ScopeNotFoundError.class - [JAR]

├─ com.google.inject.internal.Scoping.class - [JAR]

├─ com.google.inject.internal.SingleFieldInjector.class - [JAR]

├─ com.google.inject.internal.SingleMemberInjector.class - [JAR]

├─ com.google.inject.internal.SingleMethodInjector.class - [JAR]

├─ com.google.inject.internal.SingleParameterInjector.class - [JAR]

├─ com.google.inject.internal.SingletonScope.class - [JAR]

├─ com.google.inject.internal.SourceFormatter.class - [JAR]

├─ com.google.inject.internal.TypeConverterBindingProcessor.class - [JAR]

├─ com.google.inject.internal.UniqueAnnotations.class - [JAR]

├─ com.google.inject.internal.UntargettedBindingImpl.class - [JAR]

├─ com.google.inject.internal.UntargettedBindingProcessor.class - [JAR]

├─ com.google.inject.internal.WeakKeySet.class - [JAR]

org.biojava.nbio.core.sequence.edits

├─ org.biojava.nbio.core.sequence.edits.Edit.class - [JAR]

com.sun.activation.viewers

├─ com.sun.activation.viewers.ImageViewer.class - [JAR]

├─ com.sun.activation.viewers.ImageViewerCanvas.class - [JAR]

├─ com.sun.activation.viewers.TextEditor.class - [JAR]

├─ com.sun.activation.viewers.TextViewer.class - [JAR]

org.biojava.nbio.genome.parsers.cytoband

├─ org.biojava.nbio.genome.parsers.cytoband.Cytoband.class - [JAR]

├─ org.biojava.nbio.genome.parsers.cytoband.CytobandParser.class - [JAR]

├─ org.biojava.nbio.genome.parsers.cytoband.StainType.class - [JAR]

javax.xml.bind.annotation.adapters

├─ javax.xml.bind.annotation.adapters.CollapsedStringAdapter.class - [JAR]

├─ javax.xml.bind.annotation.adapters.HexBinaryAdapter.class - [JAR]

├─ javax.xml.bind.annotation.adapters.NormalizedStringAdapter.class - [JAR]

├─ javax.xml.bind.annotation.adapters.XmlAdapter.class - [JAR]

├─ javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter.class - [JAR]

├─ javax.xml.bind.annotation.adapters.XmlJavaTypeAdapters.class - [JAR]

com.sun.xml.bind.annotation

├─ com.sun.xml.bind.annotation.OverrideAnnotationOf.class - [JAR]

├─ com.sun.xml.bind.annotation.XmlIsSet.class - [JAR]

├─ com.sun.xml.bind.annotation.XmlLocation.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.eventbus

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.AllowConcurrentEvents.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.AsyncEventBus.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.DeadEvent.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.Dispatcher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.EventBus.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.Subscribe.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.Subscriber.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.SubscriberExceptionContext.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.SubscriberExceptionHandler.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.SubscriberRegistry.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.eventbus.package-info.class - [JAR]

com.sun.activation.registries

├─ com.sun.activation.registries.LineTokenizer.class - [JAR]

├─ com.sun.activation.registries.LogSupport.class - [JAR]

├─ com.sun.activation.registries.MailcapFile.class - [JAR]

├─ com.sun.activation.registries.MailcapParseException.class - [JAR]

├─ com.sun.activation.registries.MailcapTokenizer.class - [JAR]

├─ com.sun.activation.registries.MimeTypeEntry.class - [JAR]

├─ com.sun.activation.registries.MimeTypeFile.class - [JAR]

org.forester.development

├─ org.forester.development.AbstractRenderer.class - [JAR]

├─ org.forester.development.DevelopmentTools.class - [JAR]

├─ org.forester.development.Hello3d.class - [JAR]

├─ org.forester.development.HmmerRest.class - [JAR]

├─ org.forester.development.MsaRenderer.class - [JAR]

├─ org.forester.development.RandomThing.class - [JAR]

├─ org.forester.development.ResidueRenderer.class - [JAR]

├─ org.forester.development.Test.class - [JAR]

├─ org.forester.development.Time.class - [JAR]

├─ org.forester.development.neTest.class - [JAR]

com.google.inject.binder

├─ com.google.inject.binder.AnnotatedBindingBuilder.class - [JAR]

├─ com.google.inject.binder.AnnotatedConstantBindingBuilder.class - [JAR]

├─ com.google.inject.binder.AnnotatedElementBuilder.class - [JAR]

├─ com.google.inject.binder.ConstantBindingBuilder.class - [JAR]

├─ com.google.inject.binder.LinkedBindingBuilder.class - [JAR]

├─ com.google.inject.binder.ScopedBindingBuilder.class - [JAR]

com.approximatrix.charting.coordsystem.ticklocator

├─ com.approximatrix.charting.coordsystem.ticklocator.NumericTickLocator.class - [JAR]

├─ com.approximatrix.charting.coordsystem.ticklocator.NumericXTickLocator.class - [JAR]

├─ com.approximatrix.charting.coordsystem.ticklocator.NumericYTickLocator.class - [JAR]

├─ com.approximatrix.charting.coordsystem.ticklocator.ObjectTickLocator.class - [JAR]

├─ com.approximatrix.charting.coordsystem.ticklocator.ObjectXTickLocator.class - [JAR]

javax.activation

├─ javax.activation.ActivationDataFlavor.class - [JAR]

├─ javax.activation.CommandInfo.class - [JAR]

├─ javax.activation.CommandMap.class - [JAR]

├─ javax.activation.CommandObject.class - [JAR]

├─ javax.activation.DataContentHandler.class - [JAR]

├─ javax.activation.DataContentHandlerFactory.class - [JAR]

├─ javax.activation.DataHandler.class - [JAR]

├─ javax.activation.DataHandlerDataSource.class - [JAR]

├─ javax.activation.DataSource.class - [JAR]

├─ javax.activation.DataSourceDataContentHandler.class - [JAR]

├─ javax.activation.FileDataSource.class - [JAR]

├─ javax.activation.FileTypeMap.class - [JAR]

├─ javax.activation.MailcapCommandMap.class - [JAR]

├─ javax.activation.MimeType.class - [JAR]

├─ javax.activation.MimeTypeParameterList.class - [JAR]

├─ javax.activation.MimeTypeParseException.class - [JAR]

├─ javax.activation.MimetypesFileTypeMap.class - [JAR]

├─ javax.activation.ObjectDataContentHandler.class - [JAR]

├─ javax.activation.SecuritySupport.class - [JAR]

├─ javax.activation.URLDataSource.class - [JAR]

├─ javax.activation.UnsupportedDataTypeException.class - [JAR]

org.biojava.nbio.core.sequence.compound

├─ org.biojava.nbio.core.sequence.compound.ABITracerCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AmbiguityDNACompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AmbiguityRNACompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AminoAcidCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AminoAcidCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.CodonCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.DNACompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.NucleotideCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.RNACompoundSet.class - [JAR]

com.sun.xml.bind.v2.model.nav

├─ com.sun.xml.bind.v2.model.nav.GenericArrayTypeImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.nav.Navigator.class - [JAR]

├─ com.sun.xml.bind.v2.model.nav.ParameterizedTypeImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.nav.ReflectionNavigator.class - [JAR]

├─ com.sun.xml.bind.v2.model.nav.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.model.nav.TypeVisitor.class - [JAR]

├─ com.sun.xml.bind.v2.model.nav.WildcardTypeImpl.class - [JAR]

org.checkerframework.checker.fenum.qual

├─ org.checkerframework.checker.fenum.qual.AwtAlphaCompositingRule.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.AwtColorSpace.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.AwtCursorType.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.AwtFlowLayout.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.Fenum.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.FenumBottom.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.FenumTop.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.FenumUnqualified.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.PolyFenum.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingBoxOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingCompassDirection.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingElementOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingHorizontalOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingSplitPaneOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingTextOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingTitleJustification.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingTitlePosition.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingVerticalOrientation.class - [JAR]

org.forester.evoinference.matrix.character

├─ org.forester.evoinference.matrix.character.BasicCharacterStateMatrix.class - [JAR]

├─ org.forester.evoinference.matrix.character.CharacterStateMatrix.class - [JAR]

com.google.thirdparty.publicsuffix

├─ com.google.thirdparty.publicsuffix.PublicSuffixPatterns.class - [JAR]

├─ com.google.thirdparty.publicsuffix.PublicSuffixType.class - [JAR]

├─ com.google.thirdparty.publicsuffix.TrieParser.class - [JAR]

javax.annotation.meta

├─ javax.annotation.meta.Exclusive.class - [JAR]

├─ javax.annotation.meta.Exhaustive.class - [JAR]

├─ javax.annotation.meta.TypeQualifier.class - [JAR]

├─ javax.annotation.meta.TypeQualifierDefault.class - [JAR]

├─ javax.annotation.meta.TypeQualifierNickname.class - [JAR]

├─ javax.annotation.meta.TypeQualifierValidator.class - [JAR]

├─ javax.annotation.meta.When.class - [JAR]

org.biojava.nbio.core.search.io.blast

├─ org.biojava.nbio.core.search.io.blast.BlastHit.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastHitBuilder.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastHsp.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastHspBuilder.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastResult.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastResultBuilder.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastTabularParser.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastXMLParser.class - [JAR]

org.forester.io.parsers.nhx

├─ org.forester.io.parsers.nhx.NHXFormatException.class - [JAR]

├─ org.forester.io.parsers.nhx.NHXParser.class - [JAR]

├─ org.forester.io.parsers.nhx.NHXtags.class - [JAR]

org.forester.species

├─ org.forester.species.BasicSpecies.class - [JAR]

├─ org.forester.species.Species.class - [JAR]

com.approximatrix.charting.model.threedimensional

├─ com.approximatrix.charting.model.threedimensional.AbstractDotPlotDataModel.class - [JAR]

├─ com.approximatrix.charting.model.threedimensional.ColorDotPlotDataModel.class - [JAR]

├─ com.approximatrix.charting.model.threedimensional.ColorScaleDotPlotDataModel.class - [JAR]

├─ com.approximatrix.charting.model.threedimensional.DotPlotDataModelConstraints.class - [JAR]

org.forester.tools

├─ org.forester.tools.ConfidenceAssessor.class - [JAR]

├─ org.forester.tools.PhylogenyDecorator.class - [JAR]

├─ org.forester.tools.SupportCount.class - [JAR]

├─ org.forester.tools.TreeSplitMatrix.class - [JAR]

org.biojava.nbio.alignment.routines

├─ org.biojava.nbio.alignment.routines.AlignerHelper.class - [JAR]

├─ org.biojava.nbio.alignment.routines.AnchoredPairwiseSequenceAligner.class - [JAR]

├─ org.biojava.nbio.alignment.routines.GuanUberbacher.class - [JAR]

com.sun.xml.txw2.output

├─ com.sun.xml.txw2.output.CharacterEscapeHandler.class - [JAR]

├─ com.sun.xml.txw2.output.DataWriter.class - [JAR]

├─ com.sun.xml.txw2.output.DelegatingXMLStreamWriter.class - [JAR]

├─ com.sun.xml.txw2.output.Dom2SaxAdapter.class - [JAR]

├─ com.sun.xml.txw2.output.DomSerializer.class - [JAR]

├─ com.sun.xml.txw2.output.DumbEscapeHandler.class - [JAR]

├─ com.sun.xml.txw2.output.DumpSerializer.class - [JAR]

├─ com.sun.xml.txw2.output.IndentingXMLFilter.class - [JAR]

├─ com.sun.xml.txw2.output.IndentingXMLStreamWriter.class - [JAR]

├─ com.sun.xml.txw2.output.ResultFactory.class - [JAR]

├─ com.sun.xml.txw2.output.SaxSerializer.class - [JAR]

├─ com.sun.xml.txw2.output.StaxSerializer.class - [JAR]

├─ com.sun.xml.txw2.output.StreamSerializer.class - [JAR]

├─ com.sun.xml.txw2.output.TXWResult.class - [JAR]

├─ com.sun.xml.txw2.output.TXWSerializer.class - [JAR]

├─ com.sun.xml.txw2.output.XMLWriter.class - [JAR]

├─ com.sun.xml.txw2.output.XmlSerializer.class - [JAR]

org.forester.test

├─ org.forester.test.Test.class - [JAR]

com.sun.istack

├─ com.sun.istack.Builder.class - [JAR]

├─ com.sun.istack.ByteArrayDataSource.class - [JAR]

├─ com.sun.istack.FinalArrayList.class - [JAR]

├─ com.sun.istack.FragmentContentHandler.class - [JAR]

├─ com.sun.istack.Interned.class - [JAR]

├─ com.sun.istack.NotNull.class - [JAR]

├─ com.sun.istack.Nullable.class - [JAR]

├─ com.sun.istack.Pool.class - [JAR]

├─ com.sun.istack.SAXException2.class - [JAR]

├─ com.sun.istack.SAXParseException2.class - [JAR]

├─ com.sun.istack.XMLStreamException2.class - [JAR]

├─ com.sun.istack.XMLStreamReaderToContentHandler.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.base

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Absent.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.AbstractIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Ascii.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.CaseFormat.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.CharMatcher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Charsets.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.CommonMatcher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.CommonPattern.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Converter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Defaults.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Enums.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Equivalence.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.ExtraObjectsMethodsForWeb.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.FinalizablePhantomReference.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.FinalizableReference.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.FinalizableReferenceQueue.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.FinalizableSoftReference.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.FinalizableWeakReference.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Function.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.FunctionalEquivalence.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Functions.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Java8Usage.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.JdkPattern.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Joiner.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.MoreObjects.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Objects.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Optional.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.PairwiseEquivalence.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.PatternCompiler.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Platform.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Preconditions.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Predicate.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Predicates.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Present.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.SmallCharMatcher.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Splitter.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.StandardSystemProperty.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Stopwatch.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Strings.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Supplier.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Suppliers.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Throwables.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Ticker.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Utf8.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.Verify.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.VerifyException.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.base.package-info.class - [JAR]

org.biojava.nbio.core.alignment.matrices

├─ org.biojava.nbio.core.alignment.matrices.AAIndexFileParser.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.AAIndexProvider.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.AAindexFactory.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.ScaledSubstitutionMatrix.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.SimpleSubstitutionMatrix.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.SubstitutionMatrixHelper.class - [JAR]

com.google.inject.multibindings

├─ com.google.inject.multibindings.ClassMapKey.class - [JAR]

├─ com.google.inject.multibindings.MapBinder.class - [JAR]

├─ com.google.inject.multibindings.MapBinderBinding.class - [JAR]

├─ com.google.inject.multibindings.MapKey.class - [JAR]

├─ com.google.inject.multibindings.Multibinder.class - [JAR]

├─ com.google.inject.multibindings.MultibinderBinding.class - [JAR]

├─ com.google.inject.multibindings.MultibindingsScanner.class - [JAR]

├─ com.google.inject.multibindings.MultibindingsTargetVisitor.class - [JAR]

├─ com.google.inject.multibindings.OptionalBinder.class - [JAR]

├─ com.google.inject.multibindings.OptionalBinderBinding.class - [JAR]

├─ com.google.inject.multibindings.ProvidesIntoMap.class - [JAR]

├─ com.google.inject.multibindings.ProvidesIntoOptional.class - [JAR]

├─ com.google.inject.multibindings.ProvidesIntoSet.class - [JAR]

├─ com.google.inject.multibindings.StringMapKey.class - [JAR]

org.checkerframework.framework.util

├─ org.checkerframework.framework.util.PurityUnqualified.class - [JAR]

org.biojava.nbio.core.sequence.views

├─ org.biojava.nbio.core.sequence.views.ComplementSequenceView.class - [JAR]

├─ org.biojava.nbio.core.sequence.views.ReversedSequenceView.class - [JAR]

├─ org.biojava.nbio.core.sequence.views.RnaSequenceView.class - [JAR]

├─ org.biojava.nbio.core.sequence.views.WindowedSequence.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.annotations

├─ org.biojava.nbio.adam.shaded.com.google.common.annotations.Beta.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.annotations.GwtCompatible.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.annotations.GwtIncompatible.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.annotations.VisibleForTesting.class - [JAR]

org.checkerframework.checker.interning.qual

├─ org.checkerframework.checker.interning.qual.CompareToMethod.class - [JAR]

├─ org.checkerframework.checker.interning.qual.EqualsMethod.class - [JAR]

├─ org.checkerframework.checker.interning.qual.FindDistinct.class - [JAR]

├─ org.checkerframework.checker.interning.qual.InternMethod.class - [JAR]

├─ org.checkerframework.checker.interning.qual.Interned.class - [JAR]

├─ org.checkerframework.checker.interning.qual.InternedDistinct.class - [JAR]

├─ org.checkerframework.checker.interning.qual.PolyInterned.class - [JAR]

├─ org.checkerframework.checker.interning.qual.UnknownInterned.class - [JAR]

├─ org.checkerframework.checker.interning.qual.UsesObjectEquals.class - [JAR]

org.biojava.nbio.core.alignment.template

├─ org.biojava.nbio.core.alignment.template.AlignedSequence.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableAlignedSequence.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableProfile.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableProfilePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableSequencePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.Profile.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.ProfilePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.ProfileView.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.SequencePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.SubstitutionMatrix.class - [JAR]

com.sun.xml.bind.v2.runtime.reflect.opt

├─ com.sun.xml.bind.v2.runtime.reflect.opt.Bean.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.Const.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Boolean.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Byte.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Character.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Double.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Float.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Integer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Long.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Ref.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.FieldAccessor_Short.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.Injector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Boolean.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Byte.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Character.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Double.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Float.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Integer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Long.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Ref.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.MethodAccessor_Short.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.Ref.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Boolean.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Byte.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Double.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Float.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Integer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Long.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_field_Short.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Boolean.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Byte.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Double.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Float.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Integer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Long.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.opt.TransducedAccessor_method_Short.class - [JAR]

org.biojava.nbio.adam

├─ org.biojava.nbio.adam.BiojavaAdamContext.class - [JAR]

├─ org.biojava.nbio.adam.BiojavaKryoRegistrator.class - [JAR]

├─ org.biojava.nbio.adam.TryWith.class - [JAR]

├─ org.biojava.nbio.adam.UnmodifiableCollectionsSerializer.class - [JAR]

org.biojava.nbio.core.sequence.reference

├─ org.biojava.nbio.core.sequence.reference.AbstractReference.class - [JAR]

├─ org.biojava.nbio.core.sequence.reference.GenbankReference.class - [JAR]

├─ org.biojava.nbio.core.sequence.reference.ReferenceInterface.class - [JAR]

org.checkerframework.checker.units

├─ org.checkerframework.checker.units.UnitsTools.class - [JAR]

org.apache.commons.codec

├─ org.apache.commons.codec.BinaryDecoder.class - [JAR]

├─ org.apache.commons.codec.BinaryEncoder.class - [JAR]

├─ org.apache.commons.codec.CharEncoding.class - [JAR]

├─ org.apache.commons.codec.Charsets.class - [JAR]

├─ org.apache.commons.codec.CodecPolicy.class - [JAR]

├─ org.apache.commons.codec.Decoder.class - [JAR]

├─ org.apache.commons.codec.DecoderException.class - [JAR]

├─ org.apache.commons.codec.Encoder.class - [JAR]

├─ org.apache.commons.codec.EncoderException.class - [JAR]

├─ org.apache.commons.codec.Resources.class - [JAR]

├─ org.apache.commons.codec.StringDecoder.class - [JAR]

├─ org.apache.commons.codec.StringEncoder.class - [JAR]

├─ org.apache.commons.codec.StringEncoderComparator.class - [JAR]

com.sun.xml.bind.v2.util

├─ com.sun.xml.bind.v2.util.ByteArrayOutputStreamEx.class - [JAR]

├─ com.sun.xml.bind.v2.util.CollisionCheckStack.class - [JAR]

├─ com.sun.xml.bind.v2.util.DataSourceSource.class - [JAR]

├─ com.sun.xml.bind.v2.util.EditDistance.class - [JAR]

├─ com.sun.xml.bind.v2.util.FatalAdapter.class - [JAR]

├─ com.sun.xml.bind.v2.util.FlattenIterator.class - [JAR]

├─ com.sun.xml.bind.v2.util.QNameMap.class - [JAR]

├─ com.sun.xml.bind.v2.util.StackRecorder.class - [JAR]

├─ com.sun.xml.bind.v2.util.TypeCast.class - [JAR]

├─ com.sun.xml.bind.v2.util.XmlFactory.class - [JAR]

org.forester.archaeopteryx.webservices

├─ org.forester.archaeopteryx.webservices.BasicPhylogeniesWebserviceClient.class - [JAR]

├─ org.forester.archaeopteryx.webservices.PhylogeniesWebserviceClient.class - [JAR]

├─ org.forester.archaeopteryx.webservices.WebserviceUtil.class - [JAR]

├─ org.forester.archaeopteryx.webservices.WebservicesManager.class - [JAR]

javax.xml.bind

├─ javax.xml.bind.Binder.class - [JAR]

├─ javax.xml.bind.ContextFinder.class - [JAR]

├─ javax.xml.bind.DataBindingException.class - [JAR]

├─ javax.xml.bind.DatatypeConverter.class - [JAR]

├─ javax.xml.bind.DatatypeConverterImpl.class - [JAR]

├─ javax.xml.bind.DatatypeConverterInterface.class - [JAR]

├─ javax.xml.bind.Element.class - [JAR]

├─ javax.xml.bind.GetPropertyAction.class - [JAR]

├─ javax.xml.bind.JAXB.class - [JAR]

├─ javax.xml.bind.JAXBContext.class - [JAR]

├─ javax.xml.bind.JAXBContextFactory.class - [JAR]

├─ javax.xml.bind.JAXBElement.class - [JAR]

├─ javax.xml.bind.JAXBException.class - [JAR]

├─ javax.xml.bind.JAXBIntrospector.class - [JAR]

├─ javax.xml.bind.JAXBPermission.class - [JAR]

├─ javax.xml.bind.MarshalException.class - [JAR]

├─ javax.xml.bind.Marshaller.class - [JAR]

├─ javax.xml.bind.Messages.class - [JAR]

├─ javax.xml.bind.ModuleUtil.class - [JAR]

├─ javax.xml.bind.NotIdentifiableEvent.class - [JAR]

├─ javax.xml.bind.ParseConversionEvent.class - [JAR]

├─ javax.xml.bind.PrintConversionEvent.class - [JAR]

├─ javax.xml.bind.PropertyException.class - [JAR]

├─ javax.xml.bind.SchemaOutputResolver.class - [JAR]

├─ javax.xml.bind.ServiceLoaderUtil.class - [JAR]

├─ javax.xml.bind.TypeConstraintException.class - [JAR]

├─ javax.xml.bind.UnmarshalException.class - [JAR]

├─ javax.xml.bind.Unmarshaller.class - [JAR]

├─ javax.xml.bind.UnmarshallerHandler.class - [JAR]

├─ javax.xml.bind.ValidationEvent.class - [JAR]

├─ javax.xml.bind.ValidationEventHandler.class - [JAR]

├─ javax.xml.bind.ValidationEventLocator.class - [JAR]

├─ javax.xml.bind.ValidationException.class - [JAR]

├─ javax.xml.bind.Validator.class - [JAR]

├─ javax.xml.bind.WhiteSpaceProcessor.class - [JAR]

com.sun.xml.bind.v2.runtime.property

├─ com.sun.xml.bind.v2.runtime.property.ArrayERProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ArrayElementLeafProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ArrayProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ArrayReferenceNodeProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.AttributeProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ListElementProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.Property.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.PropertyFactory.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.PropertyImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.SingleElementLeafProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.SingleElementNodeProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.SingleMapNodeProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.SingleReferenceNodeProperty.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.StructureLoaderBuilder.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.TagAndType.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.UnmarshallerChain.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.Utils.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.property.ValueProperty.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.internal

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.internal.InternalFutureFailureAccess.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.util.concurrent.internal.InternalFutures.class - [JAR]

com.sun.xml.bind.util

├─ com.sun.xml.bind.util.AttributesImpl.class - [JAR]

├─ com.sun.xml.bind.util.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.util.ValidationEventLocatorExImpl.class - [JAR]

├─ com.sun.xml.bind.util.Which.class - [JAR]

com.sun.xml.bind.v2.runtime.reflect

├─ com.sun.xml.bind.v2.runtime.reflect.Accessor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.AdaptedAccessor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.AdaptedLister.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.DefaultTransducedAccessor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.ListIterator.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.ListTransducedAccessorImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.Lister.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.NullSafeAccessor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerBoolean.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerByte.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerCharacter.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerDouble.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerFloat.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerInteger.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerLong.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.PrimitiveArrayListerShort.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.TransducedAccessor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.reflect.Utils.class - [JAR]

org.biojava.nbio.core.sequence.io.util

├─ org.biojava.nbio.core.sequence.io.util.ClasspathResource.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.util.IOUtils.class - [JAR]

com.google.inject.internal.util

├─ com.google.inject.internal.util.Classes.class - [JAR]

├─ com.google.inject.internal.util.ContinuousStopwatch.class - [JAR]

├─ com.google.inject.internal.util.LineNumbers.class - [JAR]

├─ com.google.inject.internal.util.SourceProvider.class - [JAR]

├─ com.google.inject.internal.util.StackTraceElements.class - [JAR]

org.aopalliance.aop

├─ org.aopalliance.aop.Advice.class - [JAR]

├─ org.aopalliance.aop.AspectException.class - [JAR]

org.checkerframework.checker.regex.qual

├─ org.checkerframework.checker.regex.qual.PartialRegex.class - [JAR]

├─ org.checkerframework.checker.regex.qual.PolyRegex.class - [JAR]

├─ org.checkerframework.checker.regex.qual.Regex.class - [JAR]

├─ org.checkerframework.checker.regex.qual.RegexBottom.class - [JAR]

├─ org.checkerframework.checker.regex.qual.UnknownRegex.class - [JAR]

org.forester.archaeopteryx

├─ org.forester.archaeopteryx.AptxUtil.class - [JAR]

├─ org.forester.archaeopteryx.Archaeopteryx.class - [JAR]

├─ org.forester.archaeopteryx.ArchaeopteryxA.class - [JAR]

├─ org.forester.archaeopteryx.ArchaeopteryxE.class - [JAR]

├─ org.forester.archaeopteryx.ColorSchemeChooser.class - [JAR]

├─ org.forester.archaeopteryx.Configuration.class - [JAR]

├─ org.forester.archaeopteryx.Constants.class - [JAR]

├─ org.forester.archaeopteryx.ControlPanel.class - [JAR]

├─ org.forester.archaeopteryx.DefaultFilter.class - [JAR]

├─ org.forester.archaeopteryx.FontChooser.class - [JAR]

├─ org.forester.archaeopteryx.GraphicsFileFilter.class - [JAR]

├─ org.forester.archaeopteryx.MainFrame.class - [JAR]

├─ org.forester.archaeopteryx.MainFrameApplet.class - [JAR]

├─ org.forester.archaeopteryx.MainFrameApplication.class - [JAR]

├─ org.forester.archaeopteryx.MainPanel.class - [JAR]

├─ org.forester.archaeopteryx.MainPanelApplets.class - [JAR]

├─ org.forester.archaeopteryx.MouseListener.class - [JAR]

├─ org.forester.archaeopteryx.MsaFileFilter.class - [JAR]

├─ org.forester.archaeopteryx.NHFilter.class - [JAR]

├─ org.forester.archaeopteryx.NHXFilter.class - [JAR]

├─ org.forester.archaeopteryx.NexusFilter.class - [JAR]

├─ org.forester.archaeopteryx.NodeEditPanel.class - [JAR]

├─ org.forester.archaeopteryx.NodeFrame.class - [JAR]

├─ org.forester.archaeopteryx.NodePanel.class - [JAR]

├─ org.forester.archaeopteryx.Options.class - [JAR]

├─ org.forester.archaeopteryx.PdfExporter.class - [JAR]

├─ org.forester.archaeopteryx.PdfFilter.class - [JAR]

├─ org.forester.archaeopteryx.Printer.class - [JAR]

├─ org.forester.archaeopteryx.SequencesFileFilter.class - [JAR]

├─ org.forester.archaeopteryx.TextFrame.class - [JAR]

├─ org.forester.archaeopteryx.TolFilter.class - [JAR]

├─ org.forester.archaeopteryx.TreeColorSet.class - [JAR]

├─ org.forester.archaeopteryx.TreeFontSet.class - [JAR]

├─ org.forester.archaeopteryx.TreePanel.class - [JAR]

├─ org.forester.archaeopteryx.TreePanelUtil.class - [JAR]

├─ org.forester.archaeopteryx.UrlTreeReader.class - [JAR]

├─ org.forester.archaeopteryx.XMLFilter.class - [JAR]

org.forester.msa

├─ org.forester.msa.BasicMsa.class - [JAR]

├─ org.forester.msa.ClustalOmega.class - [JAR]

├─ org.forester.msa.DeleteableMsa.class - [JAR]

├─ org.forester.msa.Mafft.class - [JAR]

├─ org.forester.msa.Msa.class - [JAR]

├─ org.forester.msa.MsaFormatException.class - [JAR]

├─ org.forester.msa.MsaInferrer.class - [JAR]

├─ org.forester.msa.MsaMethods.class - [JAR]

├─ org.forester.msa.ResampleableMsa.class - [JAR]

com.approximatrix.charting.test

├─ com.approximatrix.charting.test.GraphFrame.class - [JAR]

├─ com.approximatrix.charting.test.ImageFilter.class - [JAR]

├─ com.approximatrix.charting.test.TestChartDataModel.class - [JAR]

org.forester.application

├─ org.forester.application.annotator.class - [JAR]

├─ org.forester.application.check_fasta.class - [JAR]

├─ org.forester.application.confadd.class - [JAR]

├─ org.forester.application.count_support.class - [JAR]

├─ org.forester.application.decorator.class - [JAR]

├─ org.forester.application.decoratorX.class - [JAR]

├─ org.forester.application.dom_dup.class - [JAR]

├─ org.forester.application.fasta_split.class - [JAR]

├─ org.forester.application.gene_tree_preprocess.class - [JAR]

├─ org.forester.application.goac.class - [JAR]

├─ org.forester.application.gsdi.class - [JAR]

├─ org.forester.application.mcc.class - [JAR]

├─ org.forester.application.meta_ontologizer.class - [JAR]

├─ org.forester.application.msa_compactor.class - [JAR]

├─ org.forester.application.nj.class - [JAR]

├─ org.forester.application.obo_tool.class - [JAR]

├─ org.forester.application.pccx.class - [JAR]

├─ org.forester.application.pfam2go_extractor.class - [JAR]

├─ org.forester.application.pfam_go.class - [JAR]

├─ org.forester.application.pfamacc2go.class - [JAR]

├─ org.forester.application.pfamacc2pfamid.class - [JAR]

├─ org.forester.application.phylostrip.class - [JAR]

├─ org.forester.application.phyloxml_converter.class - [JAR]

├─ org.forester.application.rio.class - [JAR]

├─ org.forester.application.support_statistics.class - [JAR]

├─ org.forester.application.support_transfer.class - [JAR]

├─ org.forester.application.surfacing.class - [JAR]

├─ org.forester.application.table2fasta.class - [JAR]

com.google.inject.util

├─ com.google.inject.util.Modules.class - [JAR]

├─ com.google.inject.util.Providers.class - [JAR]

├─ com.google.inject.util.Types.class - [JAR]

org.checkerframework.common.value.qual

├─ org.checkerframework.common.value.qual.ArrayLen.class - [JAR]

├─ org.checkerframework.common.value.qual.ArrayLenRange.class - [JAR]

├─ org.checkerframework.common.value.qual.BoolVal.class - [JAR]

├─ org.checkerframework.common.value.qual.BottomVal.class - [JAR]

├─ org.checkerframework.common.value.qual.DoubleVal.class - [JAR]

├─ org.checkerframework.common.value.qual.EnsuresMinLenIf.class - [JAR]

├─ org.checkerframework.common.value.qual.EnumVal.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRange.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRangeFromGTENegativeOne.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRangeFromNonNegative.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRangeFromPositive.class - [JAR]

├─ org.checkerframework.common.value.qual.IntVal.class - [JAR]

├─ org.checkerframework.common.value.qual.MatchesRegex.class - [JAR]

├─ org.checkerframework.common.value.qual.MinLen.class - [JAR]

├─ org.checkerframework.common.value.qual.MinLenFieldInvariant.class - [JAR]

├─ org.checkerframework.common.value.qual.PolyValue.class - [JAR]

├─ org.checkerframework.common.value.qual.StaticallyExecutable.class - [JAR]

├─ org.checkerframework.common.value.qual.StringVal.class - [JAR]

├─ org.checkerframework.common.value.qual.UnknownVal.class - [JAR]

org.forester.evoinference

├─ org.forester.evoinference.TestPhylogenyReconstruction.class - [JAR]

org.checkerframework.checker.guieffect.qual

├─ org.checkerframework.checker.guieffect.qual.AlwaysSafe.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.PolyUI.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.PolyUIEffect.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.PolyUIType.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.SafeEffect.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.SafeType.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UI.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UIEffect.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UIPackage.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UIType.class - [JAR]

org.apache.commons.codec.net

├─ org.apache.commons.codec.net.BCodec.class - [JAR]

├─ org.apache.commons.codec.net.PercentCodec.class - [JAR]

├─ org.apache.commons.codec.net.QCodec.class - [JAR]

├─ org.apache.commons.codec.net.QuotedPrintableCodec.class - [JAR]

├─ org.apache.commons.codec.net.RFC1522Codec.class - [JAR]

├─ org.apache.commons.codec.net.URLCodec.class - [JAR]

├─ org.apache.commons.codec.net.Utils.class - [JAR]

com.sun.xml.bind.unmarshaller

├─ com.sun.xml.bind.unmarshaller.DOMScanner.class - [JAR]

├─ com.sun.xml.bind.unmarshaller.InfosetScanner.class - [JAR]

├─ com.sun.xml.bind.unmarshaller.Messages.class - [JAR]

├─ com.sun.xml.bind.unmarshaller.Patcher.class - [JAR]

com.sun.xml.bind.v2.model.impl

├─ com.sun.xml.bind.v2.model.impl.AnyTypeImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ArrayInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.AttributePropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.BuiltinLeafInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ClassInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.DummyPropertyInfo.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ERPropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ElementInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ElementPropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.EnumConstantImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.EnumLeafInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.FieldPropertySeed.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.GetterSetterPropertySeed.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.LeafInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.MapPropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ModelBuilder.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ModelBuilderI.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.PropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.PropertySeed.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ReferencePropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RegistryInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeAnyTypeImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeArrayInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeAttributePropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeBuiltinLeafInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeClassInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeElementInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeElementPropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeEnumConstantImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeEnumLeafInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeMapPropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeModelBuilder.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeReferencePropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeTypeInfoSetImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeTypeRefImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.RuntimeValuePropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.SingleTypePropertyInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.TypeInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.TypeInfoSetImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.TypeRefImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.Util.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.Utils.class - [JAR]

├─ com.sun.xml.bind.v2.model.impl.ValuePropertyInfoImpl.class - [JAR]

com.sun.xml.bind.v2.runtime

├─ com.sun.xml.bind.v2.runtime.AnyTypeBeanInfo.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.ArrayBeanInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.AssociationMap.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.AttributeAccessor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.BinderImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.BridgeAdapter.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.BridgeContextImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.BridgeImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.CompositeStructureBeanInfo.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.ContentHandlerAdaptor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.Coordinator.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.DomPostInitAction.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.ElementBeanInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.FilterTransducer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.IllegalAnnotationException.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.IllegalAnnotationsException.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.InlineBinaryTransducer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.InternalBridge.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.JAXBContextImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.JaxBeanInfo.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.LeafBeanInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.LifecycleMethods.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.Location.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.MarshallerImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.MimeTypedTransducer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.Name.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.NameBuilder.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.NameList.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.NamespaceContext2.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.RuntimeUtil.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.SchemaTypeTransducer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.StAXPostInitAction.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.SwaRefAdapter.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.SwaRefAdapterMarker.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.Transducer.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.Utils.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.ValueListBeanInfoImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.XMLSerializer.class - [JAR]

javax.annotation

├─ javax.annotation.CheckForNull.class - [JAR]

├─ javax.annotation.CheckForSigned.class - [JAR]

├─ javax.annotation.CheckReturnValue.class - [JAR]

├─ javax.annotation.Detainted.class - [JAR]

├─ javax.annotation.MatchesPattern.class - [JAR]

├─ javax.annotation.Nonnegative.class - [JAR]

├─ javax.annotation.Nonnull.class - [JAR]

├─ javax.annotation.Nullable.class - [JAR]

├─ javax.annotation.OverridingMethodsMustInvokeSuper.class - [JAR]

├─ javax.annotation.ParametersAreNonnullByDefault.class - [JAR]

├─ javax.annotation.ParametersAreNullableByDefault.class - [JAR]

├─ javax.annotation.PropertyKey.class - [JAR]

├─ javax.annotation.RegEx.class - [JAR]

├─ javax.annotation.Signed.class - [JAR]

├─ javax.annotation.Syntax.class - [JAR]

├─ javax.annotation.Tainted.class - [JAR]

├─ javax.annotation.Untainted.class - [JAR]

├─ javax.annotation.WillClose.class - [JAR]

├─ javax.annotation.WillCloseWhenClosed.class - [JAR]

├─ javax.annotation.WillNotClose.class - [JAR]

org.bdgenomics.formats.avro

├─ org.bdgenomics.formats.avro.Alignment.class - [JAR]

├─ org.bdgenomics.formats.avro.Alphabet.class - [JAR]

├─ org.bdgenomics.formats.avro.BDG.class - [JAR]

├─ org.bdgenomics.formats.avro.Dbxref.class - [JAR]

├─ org.bdgenomics.formats.avro.Feature.class - [JAR]

├─ org.bdgenomics.formats.avro.Fragment.class - [JAR]

├─ org.bdgenomics.formats.avro.Genotype.class - [JAR]

├─ org.bdgenomics.formats.avro.GenotypeAllele.class - [JAR]

├─ org.bdgenomics.formats.avro.GenotypeType.class - [JAR]

├─ org.bdgenomics.formats.avro.Impact.class - [JAR]

├─ org.bdgenomics.formats.avro.OntologyTerm.class - [JAR]

├─ org.bdgenomics.formats.avro.ProcessingStep.class - [JAR]

├─ org.bdgenomics.formats.avro.Read.class - [JAR]

├─ org.bdgenomics.formats.avro.ReadGroup.class - [JAR]

├─ org.bdgenomics.formats.avro.Reference.class - [JAR]

├─ org.bdgenomics.formats.avro.Sample.class - [JAR]

├─ org.bdgenomics.formats.avro.Sequence.class - [JAR]

├─ org.bdgenomics.formats.avro.Slice.class - [JAR]

├─ org.bdgenomics.formats.avro.Strand.class - [JAR]

├─ org.bdgenomics.formats.avro.TranscriptEffect.class - [JAR]

├─ org.bdgenomics.formats.avro.Variant.class - [JAR]

├─ org.bdgenomics.formats.avro.VariantAnnotation.class - [JAR]

├─ org.bdgenomics.formats.avro.VariantAnnotationMessage.class - [JAR]

├─ org.bdgenomics.formats.avro.VariantCallingAnnotations.class - [JAR]

com.sun.xml.bind.api

├─ com.sun.xml.bind.api.AccessorException.class - [JAR]

├─ com.sun.xml.bind.api.Bridge.class - [JAR]

├─ com.sun.xml.bind.api.BridgeContext.class - [JAR]

├─ com.sun.xml.bind.api.ClassResolver.class - [JAR]

├─ com.sun.xml.bind.api.CompositeStructure.class - [JAR]

├─ com.sun.xml.bind.api.ErrorListener.class - [JAR]

├─ com.sun.xml.bind.api.JAXBRIContext.class - [JAR]

├─ com.sun.xml.bind.api.Messages.class - [JAR]

├─ com.sun.xml.bind.api.RawAccessor.class - [JAR]

├─ com.sun.xml.bind.api.TypeReference.class - [JAR]

├─ com.sun.xml.bind.api.Utils.class - [JAR]

org.checkerframework.checker.formatter.qual

├─ org.checkerframework.checker.formatter.qual.ConversionCategory.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.Format.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.FormatBottom.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.FormatMethod.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.InvalidFormat.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.ReturnsFormat.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.UnknownFormat.class - [JAR]

org.forester.phylogeny.data

├─ org.forester.phylogeny.data.Accession.class - [JAR]

├─ org.forester.phylogeny.data.Annotation.class - [JAR]

├─ org.forester.phylogeny.data.BinaryCharacters.class - [JAR]

├─ org.forester.phylogeny.data.BranchColor.class - [JAR]

├─ org.forester.phylogeny.data.BranchData.class - [JAR]

├─ org.forester.phylogeny.data.BranchWidth.class - [JAR]

├─ org.forester.phylogeny.data.Confidence.class - [JAR]

├─ org.forester.phylogeny.data.Date.class - [JAR]

├─ org.forester.phylogeny.data.Distribution.class - [JAR]

├─ org.forester.phylogeny.data.DomainArchitecture.class - [JAR]

├─ org.forester.phylogeny.data.Event.class - [JAR]

├─ org.forester.phylogeny.data.Identifier.class - [JAR]

├─ org.forester.phylogeny.data.MultipleUris.class - [JAR]

├─ org.forester.phylogeny.data.NodeData.class - [JAR]

├─ org.forester.phylogeny.data.NodeDataField.class - [JAR]

├─ org.forester.phylogeny.data.NodeVisualData.class - [JAR]

├─ org.forester.phylogeny.data.PhylogenyData.class - [JAR]

├─ org.forester.phylogeny.data.PhylogenyDataUtil.class - [JAR]

├─ org.forester.phylogeny.data.Point.class - [JAR]

├─ org.forester.phylogeny.data.Polygon.class - [JAR]

├─ org.forester.phylogeny.data.PropertiesMap.class - [JAR]

├─ org.forester.phylogeny.data.Property.class - [JAR]

├─ org.forester.phylogeny.data.ProteinDomain.class - [JAR]

├─ org.forester.phylogeny.data.Reference.class - [JAR]

├─ org.forester.phylogeny.data.Sequence.class - [JAR]

├─ org.forester.phylogeny.data.SequenceRelation.class - [JAR]

├─ org.forester.phylogeny.data.Taxonomy.class - [JAR]

├─ org.forester.phylogeny.data.Uri.class - [JAR]

org.biojava.nbio.adam.convert

├─ org.biojava.nbio.adam.convert.BiojavaModule.class - [JAR]

├─ org.biojava.nbio.adam.convert.BiojavaStrandToBdgenomicsStrand.class - [JAR]

├─ org.biojava.nbio.adam.convert.ConvertUtils.class - [JAR]

├─ org.biojava.nbio.adam.convert.DnaSequenceToFeatures.class - [JAR]

├─ org.biojava.nbio.adam.convert.DnaSequenceToSequence.class - [JAR]

├─ org.biojava.nbio.adam.convert.FastqToRead.class - [JAR]

├─ org.biojava.nbio.adam.convert.ProteinSequenceToFeatures.class - [JAR]

├─ org.biojava.nbio.adam.convert.ProteinSequenceToSequence.class - [JAR]

├─ org.biojava.nbio.adam.convert.ReadToFastq.class - [JAR]

├─ org.biojava.nbio.adam.convert.RnaSequenceToFeatures.class - [JAR]

├─ org.biojava.nbio.adam.convert.RnaSequenceToSequence.class - [JAR]

org.checkerframework.checker.units.qual

├─ org.checkerframework.checker.units.qual.A.class - [JAR]

├─ org.checkerframework.checker.units.qual.Acceleration.class - [JAR]

├─ org.checkerframework.checker.units.qual.Angle.class - [JAR]

├─ org.checkerframework.checker.units.qual.Area.class - [JAR]

├─ org.checkerframework.checker.units.qual.C.class - [JAR]

├─ org.checkerframework.checker.units.qual.Current.class - [JAR]

├─ org.checkerframework.checker.units.qual.K.class - [JAR]

├─ org.checkerframework.checker.units.qual.Length.class - [JAR]

├─ org.checkerframework.checker.units.qual.Luminance.class - [JAR]

├─ org.checkerframework.checker.units.qual.Mass.class - [JAR]

├─ org.checkerframework.checker.units.qual.MixedUnits.class - [JAR]

├─ org.checkerframework.checker.units.qual.PolyUnit.class - [JAR]

├─ org.checkerframework.checker.units.qual.Prefix.class - [JAR]

├─ org.checkerframework.checker.units.qual.Speed.class - [JAR]

├─ org.checkerframework.checker.units.qual.Substance.class - [JAR]

├─ org.checkerframework.checker.units.qual.Temperature.class - [JAR]

├─ org.checkerframework.checker.units.qual.Time.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnitsBottom.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnitsMultiple.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnitsRelations.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnknownUnits.class - [JAR]

├─ org.checkerframework.checker.units.qual.cd.class - [JAR]

├─ org.checkerframework.checker.units.qual.degrees.class - [JAR]

├─ org.checkerframework.checker.units.qual.g.class - [JAR]

├─ org.checkerframework.checker.units.qual.h.class - [JAR]

├─ org.checkerframework.checker.units.qual.kg.class - [JAR]

├─ org.checkerframework.checker.units.qual.km.class - [JAR]

├─ org.checkerframework.checker.units.qual.km2.class - [JAR]

├─ org.checkerframework.checker.units.qual.kmPERh.class - [JAR]

├─ org.checkerframework.checker.units.qual.m.class - [JAR]

├─ org.checkerframework.checker.units.qual.m2.class - [JAR]

├─ org.checkerframework.checker.units.qual.mPERs.class - [JAR]

├─ org.checkerframework.checker.units.qual.mPERs2.class - [JAR]

├─ org.checkerframework.checker.units.qual.min.class - [JAR]

├─ org.checkerframework.checker.units.qual.mm.class - [JAR]

├─ org.checkerframework.checker.units.qual.mm2.class - [JAR]

├─ org.checkerframework.checker.units.qual.mol.class - [JAR]

├─ org.checkerframework.checker.units.qual.radians.class - [JAR]

├─ org.checkerframework.checker.units.qual.s.class - [JAR]

com.sun.xml.txw2.annotation

├─ com.sun.xml.txw2.annotation.XmlAttribute.class - [JAR]

├─ com.sun.xml.txw2.annotation.XmlCDATA.class - [JAR]

├─ com.sun.xml.txw2.annotation.XmlElement.class - [JAR]

├─ com.sun.xml.txw2.annotation.XmlNamespace.class - [JAR]

├─ com.sun.xml.txw2.annotation.XmlValue.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.graph

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractBaseGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractDirectedNetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractGraphBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractNetwork.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractUndirectedNetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.AbstractValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.BaseGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.DirectedGraphConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.DirectedMultiNetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.DirectedNetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.EdgesConnecting.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ElementOrder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.EndpointPair.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.EndpointPairIterator.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ForwardingGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ForwardingNetwork.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ForwardingValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.Graph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.GraphBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.GraphConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.GraphConstants.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.Graphs.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ImmutableGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ImmutableNetwork.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ImmutableValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.IncidentEdgeSet.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.MapIteratorCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.MapRetrievalCache.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.MultiEdgesConnecting.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.MutableGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.MutableNetwork.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.MutableValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.Network.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.NetworkBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.NetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.PredecessorsFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.StandardMutableGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.StandardMutableNetwork.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.StandardMutableValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.StandardNetwork.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.StandardValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.SuccessorsFunction.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.Traverser.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.UndirectedGraphConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.UndirectedMultiNetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.UndirectedNetworkConnections.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ValueGraph.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.ValueGraphBuilder.class - [JAR]

├─ org.biojava.nbio.adam.shaded.com.google.common.graph.package-info.class - [JAR]

org.biojava.nbio.core.exceptions

├─ org.biojava.nbio.core.exceptions.CompoundNotFoundException.class - [JAR]

├─ org.biojava.nbio.core.exceptions.Messages.class - [JAR]

├─ org.biojava.nbio.core.exceptions.ParserException.class - [JAR]

├─ org.biojava.nbio.core.exceptions.TranslationException.class - [JAR]

org.checkerframework.checker.builder.qual

├─ org.checkerframework.checker.builder.qual.CalledMethods.class - [JAR]

├─ org.checkerframework.checker.builder.qual.NotCalledMethods.class - [JAR]

├─ org.checkerframework.checker.builder.qual.ReturnsReceiver.class - [JAR]

javax.annotation.concurrent

├─ javax.annotation.concurrent.GuardedBy.class - [JAR]

├─ javax.annotation.concurrent.Immutable.class - [JAR]

├─ javax.annotation.concurrent.NotThreadSafe.class - [JAR]

├─ javax.annotation.concurrent.ThreadSafe.class - [JAR]

com.sun.xml.bind.v2.model.util

├─ com.sun.xml.bind.v2.model.util.ArrayInfoUtil.class - [JAR]

org.checkerframework.common.reflection.qual

├─ org.checkerframework.common.reflection.qual.ClassBound.class - [JAR]

├─ org.checkerframework.common.reflection.qual.ClassVal.class - [JAR]

├─ org.checkerframework.common.reflection.qual.ClassValBottom.class - [JAR]

├─ org.checkerframework.common.reflection.qual.ForName.class - [JAR]

├─ org.checkerframework.common.reflection.qual.GetClass.class - [JAR]

├─ org.checkerframework.common.reflection.qual.GetConstructor.class - [JAR]

├─ org.checkerframework.common.reflection.qual.GetMethod.class - [JAR]

├─ org.checkerframework.common.reflection.qual.Invoke.class - [JAR]

├─ org.checkerframework.common.reflection.qual.MethodVal.class - [JAR]

├─ org.checkerframework.common.reflection.qual.MethodValBottom.class - [JAR]

├─ org.checkerframework.common.reflection.qual.NewInstance.class - [JAR]

├─ org.checkerframework.common.reflection.qual.UnknownClass.class - [JAR]

├─ org.checkerframework.common.reflection.qual.UnknownMethod.class - [JAR]

org.forester.pccx

├─ org.forester.pccx.BasicExternalNodeBasedCoverageExtender.class - [JAR]

├─ org.forester.pccx.BranchCountingBasedScoringMethod.class - [JAR]

├─ org.forester.pccx.BranchLengthBasedScoringMethod.class - [JAR]

├─ org.forester.pccx.Coverage.class - [JAR]

├─ org.forester.pccx.CoverageCalculationMethod.class - [JAR]

├─ org.forester.pccx.CoverageCalculationOptions.class - [JAR]

├─ org.forester.pccx.CoverageCalculator.class - [JAR]

├─ org.forester.pccx.CoverageExtender.class - [JAR]

├─ org.forester.pccx.ExternalNodeBasedCoverage.class - [JAR]

├─ org.forester.pccx.ExternalNodeBasedCoverageMethod.class - [JAR]

├─ org.forester.pccx.ExternalNodeBasedCoverageMethodOptions.class - [JAR]

├─ org.forester.pccx.LogBranchLengthBasedScoringMethod.class - [JAR]

├─ org.forester.pccx.ModelingUtils.class - [JAR]

├─ org.forester.pccx.ScoringMethodForExternalNode.class - [JAR]

├─ org.forester.pccx.TestPccx.class - [JAR]

org.biojava.nbio.core.sequence.io

├─ org.biojava.nbio.core.sequence.io.ABITrace.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.BufferedReaderBytesRead.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.CasePreservingProteinSequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.DNASequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaGeneWriter.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaReaderHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaSequenceParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaWriter.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaWriterHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FileProxyDNASequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FileProxyProteinSequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FileProxyRNASequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankReaderHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankSequenceParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankWriter.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankWriterHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericFastaHeaderFormat.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericFastaHeaderParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericGenbankHeaderFormat.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericGenbankHeaderParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.IUPACParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.PlainFastaHeaderParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.ProteinSequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.RNASequenceCreator.class - [JAR]

org.apache.commons.codec.digest

├─ org.apache.commons.codec.digest.B64.class - [JAR]

├─ org.apache.commons.codec.digest.Crypt.class - [JAR]

├─ org.apache.commons.codec.digest.DigestUtils.class - [JAR]

├─ org.apache.commons.codec.digest.HmacAlgorithms.class - [JAR]

├─ org.apache.commons.codec.digest.HmacUtils.class - [JAR]

├─ org.apache.commons.codec.digest.Md5Crypt.class - [JAR]

├─ org.apache.commons.codec.digest.MessageDigestAlgorithms.class - [JAR]

├─ org.apache.commons.codec.digest.MurmurHash2.class - [JAR]

├─ org.apache.commons.codec.digest.MurmurHash3.class - [JAR]

├─ org.apache.commons.codec.digest.PureJavaCrc32.class - [JAR]

├─ org.apache.commons.codec.digest.PureJavaCrc32C.class - [JAR]

├─ org.apache.commons.codec.digest.Sha2Crypt.class - [JAR]

├─ org.apache.commons.codec.digest.UnixCrypt.class - [JAR]

├─ org.apache.commons.codec.digest.XXHash32.class - [JAR]

org.forester.io.parsers

├─ org.forester.io.parsers.FastaParser.class - [JAR]

├─ org.forester.io.parsers.GeneralMsaParser.class - [JAR]

├─ org.forester.io.parsers.HmmPfamOutputParser.class - [JAR]

├─ org.forester.io.parsers.HmmscanPerDomainTableParser.class - [JAR]

├─ org.forester.io.parsers.IteratingPhylogenyParser.class - [JAR]

├─ org.forester.io.parsers.PhylogenyParser.class - [JAR]

├─ org.forester.io.parsers.SymmetricalDistanceMatrixParser.class - [JAR]

com.sun.xml.bind.v2.schemagen

├─ com.sun.xml.bind.v2.schemagen.FoolProofResolver.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.Form.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.GroupKind.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.MultiMap.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.Tree.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.Util.class - [JAR]

├─ com.sun.xml.bind.v2.schemagen.XmlSchemaGenerator.class - [JAR]

com.sun.xml.bind.v2.runtime.unmarshaller

├─ com.sun.xml.bind.v2.runtime.unmarshaller.AttributesEx.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.AttributesExImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Base64Data.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.ChildLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.DefaultIDResolver.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.DefaultValueLoaderDecorator.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Discarder.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.DomLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.FastInfosetConnector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.IntArrayData.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.IntData.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Intercepter.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.InterningXmlVisitor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.LeafPropertyLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.LeafPropertyXsiLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Loader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.LocatorEx.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.LocatorExWrapper.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.MTOMDecorator.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Patcher.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.ProxyLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Receiver.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.SAXConnector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.Scope.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.StAXConnector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.StAXEventConnector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.StAXExConnector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.StAXStreamConnector.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.StructureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.TagName.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.TextLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallerImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.UnmarshallingContext.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.ValidatingUnmarshaller.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.ValuePropertyLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.WildcardLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.XmlVisitor.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.XsiNilLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.unmarshaller.XsiTypeLoader.class - [JAR]

org.forester.io.parsers.util

├─ org.forester.io.parsers.util.ParserUtils.class - [JAR]

├─ org.forester.io.parsers.util.PhylogenyParserException.class - [JAR]

javax.inject

├─ javax.inject.Inject.class - [JAR]

├─ javax.inject.Named.class - [JAR]

├─ javax.inject.Provider.class - [JAR]

├─ javax.inject.Qualifier.class - [JAR]

├─ javax.inject.Scope.class - [JAR]

├─ javax.inject.Singleton.class - [JAR]

org.biojava.nbio.genome.parsers.twobit

├─ org.biojava.nbio.genome.parsers.twobit.SimpleTwoBitFileProvider.class - [JAR]

├─ org.biojava.nbio.genome.parsers.twobit.TwoBitFacade.class - [JAR]

├─ org.biojava.nbio.genome.parsers.twobit.TwoBitParser.class - [JAR]

org.forester.phylogeny

├─ org.forester.phylogeny.Phylogeny.class - [JAR]

├─ org.forester.phylogeny.PhylogenyBranch.class - [JAR]

├─ org.forester.phylogeny.PhylogenyMethods.class - [JAR]

├─ org.forester.phylogeny.PhylogenyNode.class - [JAR]

com.sun.xml.bind.v2

├─ com.sun.xml.bind.v2.ClassFactory.class - [JAR]

├─ com.sun.xml.bind.v2.ContextFactory.class - [JAR]

├─ com.sun.xml.bind.v2.JAXBContextFactory.class - [JAR]

├─ com.sun.xml.bind.v2.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.TODO.class - [JAR]

├─ com.sun.xml.bind.v2.WellKnownNamespace.class - [JAR]

org.forester.phylogeny.factories

├─ org.forester.phylogeny.factories.ParserBasedPhylogenyFactory.class - [JAR]

├─ org.forester.phylogeny.factories.PhylogenyFactory.class - [JAR]

org.bdgenomics.convert

├─ org.bdgenomics.convert.AbstractConverter.class - [JAR]

├─ org.bdgenomics.convert.ConversionException.class - [JAR]

├─ org.bdgenomics.convert.ConversionStringency.class - [JAR]

├─ org.bdgenomics.convert.Converter.class - [JAR]

org.biojava.nbio.adam.shaded.com.google.common.base.internal

├─ org.biojava.nbio.adam.shaded.com.google.common.base.internal.Finalizer.class - [JAR]

org.checkerframework.checker.i18n.qual

├─ org.checkerframework.checker.i18n.qual.LocalizableKey.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.LocalizableKeyBottom.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.Localized.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.UnknownLocalizableKey.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.UnknownLocalized.class - [JAR]

com.sun.xml.bind.v2.model.annotation

├─ com.sun.xml.bind.v2.model.annotation.AbstractInlineAnnotationReaderImpl.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.AnnotationReader.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.AnnotationSource.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.ClassLocatable.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.FieldLocatable.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.Init.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.Locatable.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.LocatableAnnotation.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.Messages.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.MethodLocatable.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.Quick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.RuntimeAnnotationReader.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.RuntimeInlineAnnotationReader.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlAttributeQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlElementDeclQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlElementQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlElementRefQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlElementRefsQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlEnumQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlRootElementQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlSchemaQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlSchemaTypeQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlTransientQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlTypeQuick.class - [JAR]

├─ com.sun.xml.bind.v2.model.annotation.XmlValueQuick.class - [JAR]

org.apache.commons.codec.language.bm

├─ org.apache.commons.codec.language.bm.BeiderMorseEncoder.class - [JAR]

├─ org.apache.commons.codec.language.bm.Lang.class - [JAR]

├─ org.apache.commons.codec.language.bm.Languages.class - [JAR]

├─ org.apache.commons.codec.language.bm.NameType.class - [JAR]

├─ org.apache.commons.codec.language.bm.PhoneticEngine.class - [JAR]

├─ org.apache.commons.codec.language.bm.ResourceConstants.class - [JAR]

├─ org.apache.commons.codec.language.bm.Rule.class - [JAR]

├─ org.apache.commons.codec.language.bm.RuleType.class - [JAR]

com.approximatrix.charting.event

├─ com.approximatrix.charting.event.ChartDataModelEvent.class - [JAR]

├─ com.approximatrix.charting.event.ChartDataModelListener.class - [JAR]

├─ com.approximatrix.charting.event.InfoAvailableEvent.class - [JAR]

├─ com.approximatrix.charting.event.InfoAvailableListener.class - [JAR]

├─ com.approximatrix.charting.event.RenderChangeEvent.class - [JAR]

├─ com.approximatrix.charting.event.RenderChangeListener.class - [JAR]

org.forester.analysis

├─ org.forester.analysis.AncestralTaxonomyInference.class - [JAR]

├─ org.forester.analysis.AncestralTaxonomyInferenceException.class - [JAR]

├─ org.forester.analysis.TaxonomyDataManager.class - [JAR]

org.checkerframework.checker.lock.qual

├─ org.checkerframework.checker.lock.qual.EnsuresLockHeld.class - [JAR]

├─ org.checkerframework.checker.lock.qual.EnsuresLockHeldIf.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardSatisfied.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardedBy.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardedByBottom.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardedByUnknown.class - [JAR]

├─ org.checkerframework.checker.lock.qual.Holding.class - [JAR]

├─ org.checkerframework.checker.lock.qual.LockHeld.class - [JAR]

├─ org.checkerframework.checker.lock.qual.LockPossiblyHeld.class - [JAR]

├─ org.checkerframework.checker.lock.qual.LockingFree.class - [JAR]

├─ org.checkerframework.checker.lock.qual.MayReleaseLocks.class - [JAR]

├─ org.checkerframework.checker.lock.qual.ReleasesNoLocks.class - [JAR]

org.forester.rio

├─ org.forester.rio.RIO.class - [JAR]

├─ org.forester.rio.RIOException.class - [JAR]

├─ org.forester.rio.TestRIO.class - [JAR]

com.approximatrix.charting

├─ com.approximatrix.charting.AbstractChart.class - [JAR]

├─ com.approximatrix.charting.Axis.class - [JAR]

├─ com.approximatrix.charting.BufferedChart.class - [JAR]

├─ com.approximatrix.charting.Chart.class - [JAR]

├─ com.approximatrix.charting.ChartEncoder.class - [JAR]

├─ com.approximatrix.charting.ChartUtilities.class - [JAR]

├─ com.approximatrix.charting.CoordSystem.class - [JAR]

├─ com.approximatrix.charting.DefaultChart.class - [JAR]

├─ com.approximatrix.charting.EncodingException.class - [JAR]

├─ com.approximatrix.charting.ExtendedChart.class - [JAR]

├─ com.approximatrix.charting.GenericChart.class - [JAR]

├─ com.approximatrix.charting.Legend.class - [JAR]

├─ com.approximatrix.charting.SimpleStrokeDefs.class - [JAR]

├─ com.approximatrix.charting.Title.class - [JAR]

org.checkerframework.checker.signature.qual

├─ org.checkerframework.checker.signature.qual.ArrayWithoutPackage.class - [JAR]

├─ org.checkerframework.checker.signature.qual.BinaryName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.BinaryNameOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.BinaryNameWithoutPackage.class - [JAR]

├─ org.checkerframework.checker.signature.qual.CanonicalName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.CanonicalNameOrEmpty.class - [JAR]

├─ org.checkerframework.checker.signature.qual.ClassGetName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.ClassGetSimpleName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.DotSeparatedIdentifiers.class - [JAR]

├─ org.checkerframework.checker.signature.qual.DotSeparatedIdentifiersOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FieldDescriptor.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FieldDescriptorForPrimitive.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FieldDescriptorWithoutPackage.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FqBinaryName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FullyQualifiedName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.Identifier.class - [JAR]

├─ org.checkerframework.checker.signature.qual.IdentifierOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.InternalForm.class - [JAR]

├─ org.checkerframework.checker.signature.qual.MethodDescriptor.class - [JAR]

├─ org.checkerframework.checker.signature.qual.PolySignature.class - [JAR]

├─ org.checkerframework.checker.signature.qual.PrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.SignatureBottom.class - [JAR]

├─ org.checkerframework.checker.signature.qual.SignatureUnknown.class - [JAR]

org.forester.util

├─ org.forester.util.AsciiHistogram.class - [JAR]

├─ org.forester.util.BasicDescriptiveStatistics.class - [JAR]

├─ org.forester.util.BasicTable.class - [JAR]

├─ org.forester.util.BasicTableParser.class - [JAR]

├─ org.forester.util.CommandLineArguments.class - [JAR]

├─ org.forester.util.CommandProcessBuilder.class - [JAR]

├─ org.forester.util.DescriptiveStatistics.class - [JAR]

├─ org.forester.util.EasyWriter.class - [JAR]

├─ org.forester.util.ExternalProgram.class - [JAR]

├─ org.forester.util.FailedConditionCheckException.class - [JAR]

├─ org.forester.util.ForesterConstants.class - [JAR]

├─ org.forester.util.ForesterUtil.class - [JAR]

├─ org.forester.util.GeneralTable.class - [JAR]

├─ org.forester.util.IllegalFormatUseException.class - [JAR]

├─ org.forester.util.SequenceAccessionTools.class - [JAR]

├─ org.forester.util.StringInt.class - [JAR]

├─ org.forester.util.SystemCommandExecutor.class - [JAR]

├─ org.forester.util.TaxonomyColors.class - [JAR]

├─ org.forester.util.TaxonomyGroups.class - [JAR]

├─ org.forester.util.TaxonomyUtil.class - [JAR]

├─ org.forester.util.ThreadedStreamHandler.class - [JAR]

├─ org.forester.util.WindowsUtils.class - [JAR]

com.google.errorprone.annotations.concurrent

├─ com.google.errorprone.annotations.concurrent.GuardedBy.class - [JAR]

├─ com.google.errorprone.annotations.concurrent.LazyInit.class - [JAR]

├─ com.google.errorprone.annotations.concurrent.LockMethod.class - [JAR]

├─ com.google.errorprone.annotations.concurrent.UnlockMethod.class - [JAR]

com.sun.xml.bind.v2.runtime.output

├─ com.sun.xml.bind.v2.runtime.output.C14nXmlOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.DOMOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.Encoded.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.FastInfosetStreamWriterOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.IndentingUTF8XmlOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.MTOMXmlOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.NamespaceContextImpl.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.Pcdata.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.SAXOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.SecureLoader.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.StAXExStreamWriterOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.UTF8XmlOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.XMLEventWriterOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.XMLStreamWriterOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.XmlOutput.class - [JAR]

├─ com.sun.xml.bind.v2.runtime.output.XmlOutputAbstractImpl.class - [JAR]

org.checkerframework.checker.compilermsgs.qual

├─ org.checkerframework.checker.compilermsgs.qual.CompilerMessageKey.class - [JAR]

├─ org.checkerframework.checker.compilermsgs.qual.CompilerMessageKeyBottom.class - [JAR]

├─ org.checkerframework.checker.compilermsgs.qual.UnknownCompilerMessageKey.class - [JAR]

org.biojava : biojava-adam

Maven & Gradle

biojava-adam · Biojava and ADAM integration.

Latest Version

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Download org.biojava : biojava-adam JAR file - All Versions:

View Java Class Source Code in JAR file