Download biojava-structure.jar

Version	Vulnerabilities	Size	Updated
7.0.x	biojava-structure-7.0.2.jar		1.40 MB	Jun 02, 2023
biojava-structure-7.0.1.jar		1.40 MB	Apr 06, 2023
biojava-structure-7.0.0.jar		1.39 MB	Jan 31, 2023
6.1.x	biojava-structure-6.1.0.jar		1.37 MB	Oct 27, 2022
6.0.x	biojava-structure-6.0.5.jar		1.37 MB	Feb 01, 2022
biojava-structure-6.0.4.jar		1.37 MB	Jan 05, 2022
biojava-structure-6.0.3.jar		1.37 MB	Dec 14, 2021
biojava-structure-6.0.2.jar		1.37 MB	Dec 13, 2021
biojava-structure-6.0.1.jar		1.36 MB	Nov 19, 2021
biojava-structure-6.0.0.jar		1.36 MB	Oct 29, 2021
biojava-structure-6.0.0-alpha8.jar		1.36 MB	Oct 15, 2021
biojava-structure-6.0.0-alpha7.jar		1.36 MB	Oct 04, 2021
biojava-structure-6.0.0-alpha6.jar		1.36 MB	Sep 29, 2021
biojava-structure-6.0.0-alpha5.jar		1.36 MB	Sep 20, 2021
biojava-structure-6.0.0-alpha4.jar		1.36 MB	Jun 25, 2021
biojava-structure-6.0.0-alpha3.jar		1.36 MB	Apr 14, 2021
biojava-structure-6.0.0-alpha2.jar		1.37 MB	Mar 05, 2021
biojava-structure-6.0.0-alpha1.jar		1.37 MB	Mar 04, 2021
5.4.x	biojava-structure-5.4.0.jar		1.57 MB	Jun 29, 2020
5.3.x	biojava-structure-5.3.0.jar		1.57 MB	Sep 06, 2019
5.2.x	biojava-structure-5.2.1.jar		1.53 MB	Feb 05, 2019
biojava-structure-5.2.0.jar		1.53 MB	Jan 03, 2019
5.1.x	biojava-structure-5.1.1.jar		1.53 MB	Sep 28, 2018
biojava-structure-5.1.0.jar		1.53 MB	Aug 29, 2018
5.0.x	biojava-structure-5.0.2.jar		1.53 MB	May 22, 2018
biojava-structure-5.0.1.jar		1.53 MB	May 11, 2018
biojava-structure-5.0.0.jar		1.53 MB	Mar 24, 2018
biojava-structure-5.0.0-alpha15.jar		1.53 MB	Feb 13, 2018
biojava-structure-5.0.0-alpha14.jar		1.53 MB	Jan 31, 2018
biojava-structure-5.0.0-alpha13.jar		1.53 MB	Oct 18, 2017
biojava-structure-5.0.0-alpha12.jar		1.51 MB	Jul 16, 2017
biojava-structure-5.0.0-alpha11.jar		1.51 MB	Jul 13, 2017
biojava-structure-5.0.0-alpha10.jar		1.51 MB	Jun 16, 2017
biojava-structure-5.0.0-alpha9.jar		1.51 MB	Jun 16, 2017
biojava-structure-5.0.0-alpha8.jar		1.51 MB	Mar 30, 2017
biojava-structure-5.0.0-alpha7.jar		1.51 MB	Mar 20, 2017
biojava-structure-5.0.0-alpha6.jar		1.48 MB	Aug 16, 2016
biojava-structure-5.0.0-alpha4.jar		1.49 MB	Jun 15, 2016
biojava-structure-5.0.0-alpha3.jar		1.47 MB	Mar 31, 2016
biojava-structure-5.0.0-alpha2.jar		1.47 MB	Mar 24, 2016
biojava-structure-5.0.0-alpha1.jar		1.46 MB	Mar 18, 2016
4.2.x	biojava-structure-4.2.12.jar		1.49 MB	Jun 30, 2018
biojava-structure-4.2.11.jar		1.48 MB	Jan 12, 2018
biojava-structure-4.2.10.jar		1.48 MB	Dec 12, 2017
biojava-structure-4.2.9.jar		1.48 MB	Oct 19, 2017
biojava-structure-4.2.8.jar		1.48 MB	Jul 06, 2017
biojava-structure-4.2.7.jar		1.48 MB	Mar 08, 2017
biojava-structure-4.2.6.jar		1.48 MB	Feb 18, 2017
biojava-structure-4.2.5.jar		1.48 MB	Dec 07, 2016
biojava-structure-4.2.4.jar		1.48 MB	Jul 29, 2016
biojava-structure-4.2.3.jar		1.48 MB	Jun 28, 2016
biojava-structure-4.2.2.jar		1.47 MB	Jun 15, 2016
biojava-structure-4.2.1.jar		1.46 MB	May 03, 2016
biojava-structure-4.2.0.jar		1.47 MB	Mar 10, 2016
4.1.x	biojava-structure-4.1.0.jar		1.33 MB	Jun 25, 2015
4.0.x	biojava-structure-4.0.0.jar		1.26 MB	Jan 30, 2015

View Java Class Source Code in JAR file

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Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window biojava-structure-7.0.2.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.

org.biojava.nbio.structure.align.quaternary

├─ org.biojava.nbio.structure.align.quaternary.QsAlign.class - [JAR]

├─ org.biojava.nbio.structure.align.quaternary.QsAlignParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.quaternary.QsAlignResult.class - [JAR]

├─ org.biojava.nbio.structure.align.quaternary.QsRelation.class - [JAR]

org.biojava.nbio.structure.align.client

├─ org.biojava.nbio.structure.align.client.PdbPair.class - [JAR]

├─ org.biojava.nbio.structure.align.client.StructureName.class - [JAR]

org.biojava.nbio.structure.domain.pdp

├─ org.biojava.nbio.structure.domain.pdp.ClusterDomains.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.Cut.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.CutDomain.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.CutSites.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.CutValues.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.Domain.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.GetDistanceMatrix.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.PDPDistanceMatrix.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.PDPParameters.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.Segment.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.SegmentComparator.class - [JAR]

├─ org.biojava.nbio.structure.domain.pdp.ShortSegmentRemover.class - [JAR]

org.biojava.nbio.structure.cath

├─ org.biojava.nbio.structure.cath.CathCategory.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathDatabase.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathDomain.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathFactory.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathFragment.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathInstallation.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathNode.class - [JAR]

├─ org.biojava.nbio.structure.cath.CathSegment.class - [JAR]

org.biojava.nbio.structure.align.multiple.mc

├─ org.biojava.nbio.structure.align.multiple.mc.MultipleMcMain.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.mc.MultipleMcOptimizer.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.mc.MultipleMcParameters.class - [JAR]

org.biojava.nbio.structure.quaternary

├─ org.biojava.nbio.structure.quaternary.BioAssemblyInfo.class - [JAR]

├─ org.biojava.nbio.structure.quaternary.BioAssemblyTools.class - [JAR]

├─ org.biojava.nbio.structure.quaternary.BiologicalAssemblyBuilder.class - [JAR]

├─ org.biojava.nbio.structure.quaternary.BiologicalAssemblyTransformation.class - [JAR]

├─ org.biojava.nbio.structure.quaternary.CartesianProduct.class - [JAR]

├─ org.biojava.nbio.structure.quaternary.OperatorResolver.class - [JAR]

├─ org.biojava.nbio.structure.quaternary.OrderedPair.class - [JAR]

org.biojava.nbio.structure.asa

├─ org.biojava.nbio.structure.asa.AsaCalculator.class - [JAR]

├─ org.biojava.nbio.structure.asa.GroupAsa.class - [JAR]

org.biojava.nbio.structure.align.helper

├─ org.biojava.nbio.structure.align.helper.AligMatEl.class - [JAR]

├─ org.biojava.nbio.structure.align.helper.AlignUtils.class - [JAR]

├─ org.biojava.nbio.structure.align.helper.GapArray.class - [JAR]

├─ org.biojava.nbio.structure.align.helper.IdxComparator.class - [JAR]

├─ org.biojava.nbio.structure.align.helper.IndexPair.class - [JAR]

├─ org.biojava.nbio.structure.align.helper.JointFragments.class - [JAR]

org.biojava.nbio.structure.align.pairwise

├─ org.biojava.nbio.structure.align.pairwise.AligNPE.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.Alignable.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.AlignmentProgressListener.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.AlignmentResult.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.AltAligComparator.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.AlternativeAlignment.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.FragmentJoiner.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.FragmentPair.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.Gotoh.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.JointFragmentsComparator.class - [JAR]

├─ org.biojava.nbio.structure.align.pairwise.StrCompAlignment.class - [JAR]

org.biojava.nbio.structure.math

├─ org.biojava.nbio.structure.math.SparseSquareMatrix.class - [JAR]

├─ org.biojava.nbio.structure.math.SparseVector.class - [JAR]

├─ org.biojava.nbio.structure.math.SymbolTable.class - [JAR]

org.biojava.nbio.structure.symmetry.core

├─ org.biojava.nbio.structure.symmetry.core.C2RotationSolver.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.HelicalRepeatUnit.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.Helix.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.HelixExtender.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.HelixLayers.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.HelixSolver.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.PermutationGroup.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSuperpositionScorer.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSymmetryDetector.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSymmetryParameters.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSymmetryResults.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSymmetryScores.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSymmetrySolver.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.QuatSymmetrySubunits.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.Rotation.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.RotationGroup.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.RotationSolver.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.Stoichiometry.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.SymmetryPerceptionMethod.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.core.SystematicSolver.class - [JAR]

org.biojava.nbio.structure

├─ org.biojava.nbio.structure.AminoAcid.class - [JAR]

├─ org.biojava.nbio.structure.AminoAcidImpl.class - [JAR]

├─ org.biojava.nbio.structure.Atom.class - [JAR]

├─ org.biojava.nbio.structure.AtomImpl.class - [JAR]

├─ org.biojava.nbio.structure.AtomIterator.class - [JAR]

├─ org.biojava.nbio.structure.AtomPositionMap.class - [JAR]

├─ org.biojava.nbio.structure.AugmentedResidueRange.class - [JAR]

├─ org.biojava.nbio.structure.Author.class - [JAR]

├─ org.biojava.nbio.structure.BioAssemblyIdentifier.class - [JAR]

├─ org.biojava.nbio.structure.Bond.class - [JAR]

├─ org.biojava.nbio.structure.BondImpl.class - [JAR]

├─ org.biojava.nbio.structure.BondType.class - [JAR]

├─ org.biojava.nbio.structure.Calc.class - [JAR]

├─ org.biojava.nbio.structure.Chain.class - [JAR]

├─ org.biojava.nbio.structure.ChainImpl.class - [JAR]

├─ org.biojava.nbio.structure.DBRef.class - [JAR]

├─ org.biojava.nbio.structure.DatabasePDBRevRecord.class - [JAR]

├─ org.biojava.nbio.structure.Element.class - [JAR]

├─ org.biojava.nbio.structure.ElementType.class - [JAR]

├─ org.biojava.nbio.structure.EntityInfo.class - [JAR]

├─ org.biojava.nbio.structure.EntityType.class - [JAR]

├─ org.biojava.nbio.structure.ExperimentalTechnique.class - [JAR]

├─ org.biojava.nbio.structure.Group.class - [JAR]

├─ org.biojava.nbio.structure.GroupIterator.class - [JAR]

├─ org.biojava.nbio.structure.GroupType.class - [JAR]

├─ org.biojava.nbio.structure.HetatomImpl.class - [JAR]

├─ org.biojava.nbio.structure.JournalArticle.class - [JAR]

├─ org.biojava.nbio.structure.Model.class - [JAR]

├─ org.biojava.nbio.structure.Mutator.class - [JAR]

├─ org.biojava.nbio.structure.NucleotideImpl.class - [JAR]

├─ org.biojava.nbio.structure.PDBCrystallographicInfo.class - [JAR]

├─ org.biojava.nbio.structure.PDBHeader.class - [JAR]

├─ org.biojava.nbio.structure.PDBRecord.class - [JAR]

├─ org.biojava.nbio.structure.PDBStatus.class - [JAR]

├─ org.biojava.nbio.structure.PassthroughIdentifier.class - [JAR]

├─ org.biojava.nbio.structure.PdbId.class - [JAR]

├─ org.biojava.nbio.structure.ResidueNumber.class - [JAR]

├─ org.biojava.nbio.structure.ResidueRange.class - [JAR]

├─ org.biojava.nbio.structure.ResidueRangeAndLength.class - [JAR]

├─ org.biojava.nbio.structure.SeqMisMatch.class - [JAR]

├─ org.biojava.nbio.structure.SeqMisMatchImpl.class - [JAR]

├─ org.biojava.nbio.structure.Site.class - [JAR]

├─ org.biojava.nbio.structure.StandardAminoAcid.class - [JAR]

├─ org.biojava.nbio.structure.Structure.class - [JAR]

├─ org.biojava.nbio.structure.StructureException.class - [JAR]

├─ org.biojava.nbio.structure.StructureIO.class - [JAR]

├─ org.biojava.nbio.structure.StructureIdentifier.class - [JAR]

├─ org.biojava.nbio.structure.StructureImpl.class - [JAR]

├─ org.biojava.nbio.structure.StructureTools.class - [JAR]

├─ org.biojava.nbio.structure.SubstructureIdentifier.class - [JAR]

├─ org.biojava.nbio.structure.URLIdentifier.class - [JAR]

org.biojava.nbio.structure.symmetry.axis

├─ org.biojava.nbio.structure.symmetry.axis.AxisAligner.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.axis.HelixAxisAligner.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.axis.RotationAxisAligner.class - [JAR]

org.biojava.nbio.structure.align.model

├─ org.biojava.nbio.structure.align.model.AFP.class - [JAR]

├─ org.biojava.nbio.structure.align.model.AFPChain.class - [JAR]

├─ org.biojava.nbio.structure.align.model.AfpChainWriter.class - [JAR]

org.biojava.nbio.structure.contact

├─ org.biojava.nbio.structure.contact.AtomContact.class - [JAR]

├─ org.biojava.nbio.structure.contact.AtomContactSet.class - [JAR]

├─ org.biojava.nbio.structure.contact.AtomIdentifier.class - [JAR]

├─ org.biojava.nbio.structure.contact.BoundingBox.class - [JAR]

├─ org.biojava.nbio.structure.contact.Contact.class - [JAR]

├─ org.biojava.nbio.structure.contact.Grid.class - [JAR]

├─ org.biojava.nbio.structure.contact.GridCell.class - [JAR]

├─ org.biojava.nbio.structure.contact.GroupContact.class - [JAR]

├─ org.biojava.nbio.structure.contact.GroupContactSet.class - [JAR]

├─ org.biojava.nbio.structure.contact.InterfaceFinder.class - [JAR]

├─ org.biojava.nbio.structure.contact.Pair.class - [JAR]

├─ org.biojava.nbio.structure.contact.ResidueIdentifier.class - [JAR]

├─ org.biojava.nbio.structure.contact.StructureInterface.class - [JAR]

├─ org.biojava.nbio.structure.contact.StructureInterfaceCluster.class - [JAR]

├─ org.biojava.nbio.structure.contact.StructureInterfaceList.class - [JAR]

org.biojava.nbio.structure.symmetry.misc

├─ org.biojava.nbio.structure.symmetry.misc.ChainSignature.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.misc.ProteinComplexSignature.class - [JAR]

org.biojava.nbio.structure.chem

├─ org.biojava.nbio.structure.chem.AllChemCompProvider.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemComp.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemCompAtom.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemCompBond.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemCompDescriptor.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemCompGroupFactory.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemCompProvider.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemCompTools.class - [JAR]

├─ org.biojava.nbio.structure.chem.ChemicalComponentDictionary.class - [JAR]

├─ org.biojava.nbio.structure.chem.DownloadChemCompProvider.class - [JAR]

├─ org.biojava.nbio.structure.chem.MetalBondDistance.class - [JAR]

├─ org.biojava.nbio.structure.chem.PolymerType.class - [JAR]

├─ org.biojava.nbio.structure.chem.ReducedChemCompProvider.class - [JAR]

├─ org.biojava.nbio.structure.chem.ResidueType.class - [JAR]

├─ org.biojava.nbio.structure.chem.ZipChemCompProvider.class - [JAR]

org.biojava.nbio.structure.jama

├─ org.biojava.nbio.structure.jama.CholeskyDecomposition.class - [JAR]

├─ org.biojava.nbio.structure.jama.EigenvalueDecomposition.class - [JAR]

├─ org.biojava.nbio.structure.jama.LUDecomposition.class - [JAR]

├─ org.biojava.nbio.structure.jama.Maths.class - [JAR]

├─ org.biojava.nbio.structure.jama.Matrix.class - [JAR]

├─ org.biojava.nbio.structure.jama.QRDecomposition.class - [JAR]

├─ org.biojava.nbio.structure.jama.SingularValueDecomposition.class - [JAR]

org.biojava.nbio.structure.basepairs

├─ org.biojava.nbio.structure.basepairs.BasePairParameters.class - [JAR]

├─ org.biojava.nbio.structure.basepairs.MismatchedBasePairParameters.class - [JAR]

├─ org.biojava.nbio.structure.basepairs.TertiaryBasePairParameters.class - [JAR]

org.biojava.nbio.structure.domain

├─ org.biojava.nbio.structure.domain.DomainProvider.class - [JAR]

├─ org.biojava.nbio.structure.domain.LocalProteinDomainParser.class - [JAR]

├─ org.biojava.nbio.structure.domain.SerializableCache.class - [JAR]

org.biojava.nbio.structure.ecod

├─ org.biojava.nbio.structure.ecod.EcodDatabase.class - [JAR]

├─ org.biojava.nbio.structure.ecod.EcodDomain.class - [JAR]

├─ org.biojava.nbio.structure.ecod.EcodFactory.class - [JAR]

├─ org.biojava.nbio.structure.ecod.EcodInstallation.class - [JAR]

org.biojava.nbio.structure.io.util

├─ org.biojava.nbio.structure.io.util.PDBTemporaryStorageUtils.class - [JAR]

org.biojava.nbio.structure.align.util

├─ org.biojava.nbio.structure.align.util.AFPAlignmentDisplay.class - [JAR]

├─ org.biojava.nbio.structure.align.util.AFPChainScorer.class - [JAR]

├─ org.biojava.nbio.structure.align.util.AlignmentTools.class - [JAR]

├─ org.biojava.nbio.structure.align.util.AtomCache.class - [JAR]

├─ org.biojava.nbio.structure.align.util.CliTools.class - [JAR]

├─ org.biojava.nbio.structure.align.util.CollectionTools.class - [JAR]

├─ org.biojava.nbio.structure.align.util.ConfigurationException.class - [JAR]

├─ org.biojava.nbio.structure.align.util.ResourceManager.class - [JAR]

├─ org.biojava.nbio.structure.align.util.RotationAxis.class - [JAR]

├─ org.biojava.nbio.structure.align.util.SynchronizedOutFile.class - [JAR]

├─ org.biojava.nbio.structure.align.util.URLConnectionTools.class - [JAR]

├─ org.biojava.nbio.structure.align.util.UserConfiguration.class - [JAR]

org.biojava.nbio.structure.geometry

├─ org.biojava.nbio.structure.geometry.CalcPoint.class - [JAR]

├─ org.biojava.nbio.structure.geometry.Matrices.class - [JAR]

├─ org.biojava.nbio.structure.geometry.MomentsOfInertia.class - [JAR]

├─ org.biojava.nbio.structure.geometry.SuperPosition.class - [JAR]

├─ org.biojava.nbio.structure.geometry.SuperPositionAbstract.class - [JAR]

├─ org.biojava.nbio.structure.geometry.SuperPositionQCP.class - [JAR]

├─ org.biojava.nbio.structure.geometry.SuperPositionQuat.class - [JAR]

├─ org.biojava.nbio.structure.geometry.SuperPositionSVD.class - [JAR]

├─ org.biojava.nbio.structure.geometry.SuperPositions.class - [JAR]

├─ org.biojava.nbio.structure.geometry.UnitQuaternions.class - [JAR]

org.biojava.nbio.structure.symmetry.internal

├─ org.biojava.nbio.structure.symmetry.internal.AngleOrderDetectorPlus.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.CESymmParameters.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.CeSymm.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.CeSymmIterative.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.CeSymmResult.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.GraphComponentOrderDetector.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.GraphComponentRefiner.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.OrderDetector.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.RefinerFailedException.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.ResidueGroup.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.SequenceFunctionRefiner.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.SymmOptimizer.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.SymmetryAxes.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.internal.SymmetryRefiner.class - [JAR]

org.biojava.nbio.structure.align.multiple.util

├─ org.biojava.nbio.structure.align.multiple.util.CoreSuperimposer.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentDisplay.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentScorer.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentTools.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.util.MultipleAlignmentWriter.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.util.MultipleSuperimposer.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.util.ReferenceSuperimposer.class - [JAR]

org.biojava.nbio.structure.io

├─ org.biojava.nbio.structure.io.BcifFileReader.class - [JAR]

├─ org.biojava.nbio.structure.io.BondMaker.class - [JAR]

├─ org.biojava.nbio.structure.io.CAConverter.class - [JAR]

├─ org.biojava.nbio.structure.io.ChargeAdder.class - [JAR]

├─ org.biojava.nbio.structure.io.CifFileReader.class - [JAR]

├─ org.biojava.nbio.structure.io.EntityFinder.class - [JAR]

├─ org.biojava.nbio.structure.io.FastaAFPChainConverter.class - [JAR]

├─ org.biojava.nbio.structure.io.FastaStructureParser.class - [JAR]

├─ org.biojava.nbio.structure.io.FileConvert.class - [JAR]

├─ org.biojava.nbio.structure.io.FileParsingParameters.class - [JAR]

├─ org.biojava.nbio.structure.io.GroupToSDF.class - [JAR]

├─ org.biojava.nbio.structure.io.LocalPDBDirectory.class - [JAR]

├─ org.biojava.nbio.structure.io.MMTFFileReader.class - [JAR]

├─ org.biojava.nbio.structure.io.PDBBioAssemblyParser.class - [JAR]

├─ org.biojava.nbio.structure.io.PDBFileParser.class - [JAR]

├─ org.biojava.nbio.structure.io.PDBFileReader.class - [JAR]

├─ org.biojava.nbio.structure.io.PDBParseException.class - [JAR]

├─ org.biojava.nbio.structure.io.SSBondImpl.class - [JAR]

├─ org.biojava.nbio.structure.io.SeqRes2AtomAligner.class - [JAR]

├─ org.biojava.nbio.structure.io.StructureFiletype.class - [JAR]

├─ org.biojava.nbio.structure.io.StructureIOFile.class - [JAR]

├─ org.biojava.nbio.structure.io.StructureProvider.class - [JAR]

├─ org.biojava.nbio.structure.io.StructureSequenceMatcher.class - [JAR]

org.biojava.nbio.structure.scop

├─ org.biojava.nbio.structure.scop.Astral.class - [JAR]

├─ org.biojava.nbio.structure.scop.BerkeleyScopInstallation.class - [JAR]

├─ org.biojava.nbio.structure.scop.LocalScopDatabase.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopCategory.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopDatabase.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopDescription.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopDomain.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopFactory.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopIOException.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopInstallation.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopMirror.class - [JAR]

├─ org.biojava.nbio.structure.scop.ScopNode.class - [JAR]

org.biojava.nbio.structure.align.ce

├─ org.biojava.nbio.structure.align.ce.AbstractUserArgumentProcessor.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CECPParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CECalculator.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeCPMain.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeCPUserArgumentProcessor.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeCalculatorEnhanced.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeMain.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeSideChainMain.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeSideChainUserArgumentProcessor.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.CeUserArgumentProcessor.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.ConfigStrucAligParams.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.GuiWrapper.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.MatrixListener.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.OptimalCECPMain.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.OptimalCECPParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.StartupParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.ce.UserArgumentProcessor.class - [JAR]

org.biojava.nbio.structure.align.seq

├─ org.biojava.nbio.structure.align.seq.SmithWaterman3DParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.seq.SmithWaterman3Daligner.class - [JAR]

├─ org.biojava.nbio.structure.align.seq.SmithWatermanUserArgumentProcessor.class - [JAR]

org.biojava.nbio.structure.symmetry.utils

├─ org.biojava.nbio.structure.symmetry.utils.BlastClustReader.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.utils.PermutationGenerator.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.utils.PowerSet.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.utils.SymmetryTools.class - [JAR]

org.biojava.nbio.structure.secstruc

├─ org.biojava.nbio.structure.secstruc.BetaBridge.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.BridgeType.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.DSSPParser.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.HBond.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.Ladder.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucCalc.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucElement.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucGroup.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucInfo.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucState.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucTools.class - [JAR]

├─ org.biojava.nbio.structure.secstruc.SecStrucType.class - [JAR]

org.biojava.nbio.structure.symmetry.geometry

├─ org.biojava.nbio.structure.symmetry.geometry.DistanceBox.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.IcosahedralSampler.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.Icosahedron.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.Octahedron.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.Permute.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.Polyhedron.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.Prism.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.RectangularPrism.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.SphereSampler.class - [JAR]

├─ org.biojava.nbio.structure.symmetry.geometry.Tetrahedron.class - [JAR]

org.biojava.nbio.structure.align.fatcat.calc

├─ org.biojava.nbio.structure.align.fatcat.calc.AFPCalculator.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.AFPChainer.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.AFPOptimizer.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.AFPPostProcessor.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.FCAlignHelper.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.FatCatAligner.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.FatCatParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.SigEva.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.calc.StructureAlignmentOptimizer.class - [JAR]

org.biojava.nbio.structure.io.sifts

├─ org.biojava.nbio.structure.io.sifts.SiftsChainEntry.class - [JAR]

├─ org.biojava.nbio.structure.io.sifts.SiftsChainToUniprotMapping.class - [JAR]

├─ org.biojava.nbio.structure.io.sifts.SiftsEntity.class - [JAR]

├─ org.biojava.nbio.structure.io.sifts.SiftsMappingProvider.class - [JAR]

├─ org.biojava.nbio.structure.io.sifts.SiftsResidue.class - [JAR]

├─ org.biojava.nbio.structure.io.sifts.SiftsSegment.class - [JAR]

├─ org.biojava.nbio.structure.io.sifts.SiftsXMLParser.class - [JAR]

org.biojava.nbio.structure.align

├─ org.biojava.nbio.structure.align.AFPTwister.class - [JAR]

├─ org.biojava.nbio.structure.align.AbstractStructureAlignment.class - [JAR]

├─ org.biojava.nbio.structure.align.BioJavaStructureAlignment.class - [JAR]

├─ org.biojava.nbio.structure.align.CallableStructureAlignment.class - [JAR]

├─ org.biojava.nbio.structure.align.ClusterAltAligs.class - [JAR]

├─ org.biojava.nbio.structure.align.MultipleStructureAligner.class - [JAR]

├─ org.biojava.nbio.structure.align.StrucAligParameters.class - [JAR]

├─ org.biojava.nbio.structure.align.StructureAlignment.class - [JAR]

├─ org.biojava.nbio.structure.align.StructureAlignmentFactory.class - [JAR]

├─ org.biojava.nbio.structure.align.StructurePairAligner.class - [JAR]

org.biojava.nbio.structure.xtal

├─ org.biojava.nbio.structure.xtal.BravaisLattice.class - [JAR]

├─ org.biojava.nbio.structure.xtal.CrystalBuilder.class - [JAR]

├─ org.biojava.nbio.structure.xtal.CrystalCell.class - [JAR]

├─ org.biojava.nbio.structure.xtal.CrystalTransform.class - [JAR]

├─ org.biojava.nbio.structure.xtal.SpaceGroup.class - [JAR]

├─ org.biojava.nbio.structure.xtal.SymoplibParser.class - [JAR]

├─ org.biojava.nbio.structure.xtal.TransformType.class - [JAR]

├─ org.biojava.nbio.structure.xtal.UnitCellBoundingBox.class - [JAR]

org.biojava.nbio.structure.xtal.io

├─ org.biojava.nbio.structure.xtal.io.SpaceGroupMapAdapter.class - [JAR]

├─ org.biojava.nbio.structure.xtal.io.SpaceGroupMapElements.class - [JAR]

├─ org.biojava.nbio.structure.xtal.io.SpaceGroupMapRoot.class - [JAR]

├─ org.biojava.nbio.structure.xtal.io.TransfAlgebraicAdapter.class - [JAR]

├─ org.biojava.nbio.structure.xtal.io.TreeMapSpaceGroupWrapper.class - [JAR]

org.biojava.nbio.structure.align.xml

├─ org.biojava.nbio.structure.align.xml.AFPChainFlipper.class - [JAR]

├─ org.biojava.nbio.structure.align.xml.AFPChainXMLConverter.class - [JAR]

├─ org.biojava.nbio.structure.align.xml.AFPChainXMLParser.class - [JAR]

├─ org.biojava.nbio.structure.align.xml.MultipleAlignmentXMLConverter.class - [JAR]

├─ org.biojava.nbio.structure.align.xml.MultipleAlignmentXMLParser.class - [JAR]

├─ org.biojava.nbio.structure.align.xml.PdbPairXMLConverter.class - [JAR]

├─ org.biojava.nbio.structure.align.xml.PdbPairsMessage.class - [JAR]

org.biojava.nbio.structure.cluster

├─ org.biojava.nbio.structure.cluster.Subunit.class - [JAR]

├─ org.biojava.nbio.structure.cluster.SubunitCluster.class - [JAR]

├─ org.biojava.nbio.structure.cluster.SubunitClusterer.class - [JAR]

├─ org.biojava.nbio.structure.cluster.SubunitClustererMethod.class - [JAR]

├─ org.biojava.nbio.structure.cluster.SubunitClustererParameters.class - [JAR]

├─ org.biojava.nbio.structure.cluster.SubunitExtractor.class - [JAR]

org.biojava.nbio.structure.align.multiple

├─ org.biojava.nbio.structure.align.multiple.AbstractScoresCache.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.Block.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.BlockImpl.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.BlockSet.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.BlockSetImpl.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.MultipleAlignment.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsemble.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsembleImpl.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.MultipleAlignmentImpl.class - [JAR]

├─ org.biojava.nbio.structure.align.multiple.ScoresCache.class - [JAR]

org.biojava.nbio.structure.io.cif

├─ org.biojava.nbio.structure.io.cif.AbstractCifFileSupplier.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.ChemCompConsumer.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.ChemCompConsumerImpl.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.ChemCompConverter.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifBean.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifChainSupplierImpl.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifFileConsumer.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifFileSupplier.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifStructureConsumer.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifStructureConsumerImpl.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifStructureConverter.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.CifStructureSupplierImpl.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.MetalBondConsumer.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.MetalBondConsumerImpl.class - [JAR]

├─ org.biojava.nbio.structure.io.cif.MetalBondConverter.class - [JAR]

org.biojava.nbio.structure.io.mmtf

├─ org.biojava.nbio.structure.io.mmtf.MmtfActions.class - [JAR]

├─ org.biojava.nbio.structure.io.mmtf.MmtfStructureReader.class - [JAR]

├─ org.biojava.nbio.structure.io.mmtf.MmtfStructureWriter.class - [JAR]

├─ org.biojava.nbio.structure.io.mmtf.MmtfSummaryDataBean.class - [JAR]

├─ org.biojava.nbio.structure.io.mmtf.MmtfUtils.class - [JAR]

org.biojava.nbio.structure.align.fatcat

├─ org.biojava.nbio.structure.align.fatcat.FatCat.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.FatCatFlexible.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.FatCatRigid.class - [JAR]

├─ org.biojava.nbio.structure.align.fatcat.FatCatUserArgumentProcessor.class - [JAR]

org.biojava : biojava-structure

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biojava-structure · The protein structure modules of BioJava.

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