View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window sbscl-2.1.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
fern.analysis
├─ fern.analysis.AnalysisBase.class - [JAR]
├─ fern.analysis.AutocatalyticNetworkDetection.class - [JAR]
├─ fern.analysis.IntQueue.class - [JAR]
├─ fern.analysis.IntSearchStructure.class - [JAR]
├─ fern.analysis.IntStack.class - [JAR]
├─ fern.analysis.NetworkSearchAction.class - [JAR]
├─ fern.analysis.NodeChecker.class - [JAR]
├─ fern.analysis.NodeCheckerByAnnotation.class - [JAR]
├─ fern.analysis.ShortestPath.class - [JAR]
org.simulator.plot
├─ org.simulator.plot.PlotMultiTable.class - [JAR]
├─ org.simulator.plot.PlotProcessedSedmlResults.class - [JAR]
org.simulator.fba
├─ org.simulator.fba.FluxBalanceAnalysis.class - [JAR]
├─ org.simulator.fba.NewGLPKSolver.class - [JAR]
fern.simulation.algorithm
├─ fern.simulation.algorithm.AbstractBaseTauLeaping.class - [JAR]
├─ fern.simulation.algorithm.AbstractTauLeapingPropensityBoundSimulator.class - [JAR]
├─ fern.simulation.algorithm.CompositionRejection.class - [JAR]
├─ fern.simulation.algorithm.DependencyGraph.class - [JAR]
├─ fern.simulation.algorithm.GibsonBruckSimulator.class - [JAR]
├─ fern.simulation.algorithm.GillespieEnhanced.class - [JAR]
├─ fern.simulation.algorithm.GillespieSimple.class - [JAR]
├─ fern.simulation.algorithm.GroupContainer.class - [JAR]
├─ fern.simulation.algorithm.HybridMaximalTimeStep.class - [JAR]
├─ fern.simulation.algorithm.IndexedPriorityQueue.class - [JAR]
├─ fern.simulation.algorithm.TauLeapingAbsoluteBoundSimulator.class - [JAR]
├─ fern.simulation.algorithm.TauLeapingRelativeBoundSimulator.class - [JAR]
├─ fern.simulation.algorithm.TauLeapingSpeciesPopulationBoundSimulator.class - [JAR]
fern.example
├─ fern.example.AutocatalyticNetworkExample.class - [JAR]
├─ fern.example.CellGrowthObserver.class - [JAR]
├─ fern.example.CompositionRejectionStressTest.class - [JAR]
├─ fern.example.DecayingDimerizingHistogramDistances.class - [JAR]
├─ fern.example.DecayingDimerizingInteractive.class - [JAR]
├─ fern.example.DecayingDimerizingPlots.class - [JAR]
├─ fern.example.Dsmts.class - [JAR]
├─ fern.example.ExamplePath.class - [JAR]
├─ fern.example.HistogramDistanceTestSet.class - [JAR]
├─ fern.example.IrreversibleIsomerization.class - [JAR]
├─ fern.example.LacYComplete.class - [JAR]
├─ fern.example.LacYHistogramDistances.class - [JAR]
├─ fern.example.LacZ.class - [JAR]
├─ fern.example.Mapk.class - [JAR]
├─ fern.example.MapkBenchmark.class - [JAR]
├─ fern.example.MichaelisMentenKinetic.class - [JAR]
├─ fern.example.SBMLMathTreeTest.class - [JAR]
fern.network
├─ fern.network.AbstractKineticConstantPropensityCalculator.class - [JAR]
├─ fern.network.AbstractNetworkImpl.class - [JAR]
├─ fern.network.AmountManager.class - [JAR]
├─ fern.network.AnnotationManager.class - [JAR]
├─ fern.network.AnnotationManagerImpl.class - [JAR]
├─ fern.network.ArrayKineticConstantPropensityCalculator.class - [JAR]
├─ fern.network.ComplexDependenciesPropensityCalculator.class - [JAR]
├─ fern.network.ConstantAmountManager.class - [JAR]
├─ fern.network.DefaultAmountManager.class - [JAR]
├─ fern.network.FeatureNotSupportedException.class - [JAR]
├─ fern.network.KineticConstantPropensityCalculator.class - [JAR]
├─ fern.network.Network.class - [JAR]
├─ fern.network.NetworkLoader.class - [JAR]
├─ fern.network.PartialDerivativePropensityCalculator.class - [JAR]
├─ fern.network.PropensityCalculator.class - [JAR]
fern.network.creation
├─ fern.network.creation.AutocatalyticNetwork.class - [JAR]
├─ fern.network.creation.CatalystIterator.class - [JAR]
org.simulator.comp
├─ org.simulator.comp.CompSimulator.class - [JAR]
org.simulator.omex
├─ org.simulator.omex.OMEXArchive.class - [JAR]
fern
├─ fern.Start.class - [JAR]
fern.tools.functions
├─ fern.tools.functions.Probability.class - [JAR]
org.simulator.sedml
├─ org.simulator.sedml.ExecutionException.class - [JAR]
├─ org.simulator.sedml.FileModelResolver.class - [JAR]
├─ org.simulator.sedml.IProcessedSedMLSimulationResultsWrapper.class - [JAR]
├─ org.simulator.sedml.MultTableSEDMLWrapper.class - [JAR]
├─ org.simulator.sedml.ProcessSedMLResults.class - [JAR]
├─ org.simulator.sedml.SEDMLWriter.class - [JAR]
├─ org.simulator.sedml.SedMLSBMLSimulatorExecutor.class - [JAR]
fern.simulation.observer
├─ fern.simulation.observer.AmountAtMomentObserver.class - [JAR]
├─ fern.simulation.observer.AmountIntervalObserver.class - [JAR]
├─ fern.simulation.observer.FireTypeObserver.class - [JAR]
├─ fern.simulation.observer.GnuPlotObserver.class - [JAR]
├─ fern.simulation.observer.InstantOutputObserver.class - [JAR]
├─ fern.simulation.observer.IntervalObserver.class - [JAR]
├─ fern.simulation.observer.LeapObserver.class - [JAR]
├─ fern.simulation.observer.MultiAmountIntervalObserver.class - [JAR]
├─ fern.simulation.observer.Observer.class - [JAR]
├─ fern.simulation.observer.RandomNumberGeneratorCallObserver.class - [JAR]
├─ fern.simulation.observer.ReactionIntervalObserver.class - [JAR]
├─ fern.simulation.observer.TriggerObserver.class - [JAR]
org.simulator.math.odes
├─ org.simulator.math.odes.AbstractDESSolver.class - [JAR]
├─ org.simulator.math.odes.AdamsBashforthSolver.class - [JAR]
├─ org.simulator.math.odes.AdamsMoultonSolver.class - [JAR]
├─ org.simulator.math.odes.AdaptiveStepsizeIntegrator.class - [JAR]
├─ org.simulator.math.odes.DESSolver.class - [JAR]
├─ org.simulator.math.odes.DESystem.class - [JAR]
├─ org.simulator.math.odes.DelayValueHolder.class - [JAR]
├─ org.simulator.math.odes.DelayedDESystem.class - [JAR]
├─ org.simulator.math.odes.DormandPrince54Solver.class - [JAR]
├─ org.simulator.math.odes.DormandPrince853Solver.class - [JAR]
├─ org.simulator.math.odes.EulerMethod.class - [JAR]
├─ org.simulator.math.odes.EventDESystem.class - [JAR]
├─ org.simulator.math.odes.EventInProgress.class - [JAR]
├─ org.simulator.math.odes.FastProcessDESystem.class - [JAR]
├─ org.simulator.math.odes.FirstOrderSolver.class - [JAR]
├─ org.simulator.math.odes.GraggBulirschStoerSolver.class - [JAR]
├─ org.simulator.math.odes.HighamHall54Solver.class - [JAR]
├─ org.simulator.math.odes.MultiTable.class - [JAR]
├─ org.simulator.math.odes.ParameterizedDESystem.class - [JAR]
├─ org.simulator.math.odes.RichDESystem.class - [JAR]
├─ org.simulator.math.odes.RosenbrockSolver.class - [JAR]
├─ org.simulator.math.odes.RungeKutta_EventSolver.class - [JAR]
fern.tools
├─ fern.tools.ColorSpectrum.class - [JAR]
├─ fern.tools.ConfigReader.class - [JAR]
├─ fern.tools.NetworkTools.class - [JAR]
├─ fern.tools.NumberTools.class - [JAR]
├─ fern.tools.Stochastics.class - [JAR]
org.simulator.math
├─ org.simulator.math.ArithmeticMean.class - [JAR]
├─ org.simulator.math.DistanceSum.class - [JAR]
├─ org.simulator.math.EuclideanDistance.class - [JAR]
├─ org.simulator.math.ManhattanDistance.class - [JAR]
├─ org.simulator.math.Mathematics.class - [JAR]
├─ org.simulator.math.MatrixOperations.class - [JAR]
├─ org.simulator.math.MaxAbsDistance.class - [JAR]
├─ org.simulator.math.MaxDivergenceTolerance.class - [JAR]
├─ org.simulator.math.MeanFunction.class - [JAR]
├─ org.simulator.math.N_Metric.class - [JAR]
├─ org.simulator.math.PearsonCorrelation.class - [JAR]
├─ org.simulator.math.QualityMeasure.class - [JAR]
├─ org.simulator.math.RelativeEuclideanDistance.class - [JAR]
├─ org.simulator.math.RelativeManhattanDistance.class - [JAR]
├─ org.simulator.math.RelativeMaxDistance.class - [JAR]
├─ org.simulator.math.RelativeSquaredError.class - [JAR]
├─ org.simulator.math.Relative_N_Metric.class - [JAR]
fern.network.sbml
├─ fern.network.sbml.MathTree.class - [JAR]
├─ fern.network.sbml.SBMLEventHandlerObserver.class - [JAR]
├─ fern.network.sbml.SBMLNetwork.class - [JAR]
├─ fern.network.sbml.SBMLPropensityCalculator.class - [JAR]
org.simulator.sbml.astnode
├─ org.simulator.sbml.astnode.ASTNodeInterpreter.class - [JAR]
├─ org.simulator.sbml.astnode.ASTNodeValue.class - [JAR]
├─ org.simulator.sbml.astnode.AssignmentRuleValue.class - [JAR]
├─ org.simulator.sbml.astnode.CompartmentOrParameterValue.class - [JAR]
├─ org.simulator.sbml.astnode.DivideValue.class - [JAR]
├─ org.simulator.sbml.astnode.FunctionValue.class - [JAR]
├─ org.simulator.sbml.astnode.IntegerValue.class - [JAR]
├─ org.simulator.sbml.astnode.LocalParameterValue.class - [JAR]
├─ org.simulator.sbml.astnode.MinusValue.class - [JAR]
├─ org.simulator.sbml.astnode.NamedValue.class - [JAR]
├─ org.simulator.sbml.astnode.PlusValue.class - [JAR]
├─ org.simulator.sbml.astnode.PowerValue.class - [JAR]
├─ org.simulator.sbml.astnode.RateRuleValue.class - [JAR]
├─ org.simulator.sbml.astnode.ReactionValue.class - [JAR]
├─ org.simulator.sbml.astnode.RootFunctionValue.class - [JAR]
├─ org.simulator.sbml.astnode.RuleValue.class - [JAR]
├─ org.simulator.sbml.astnode.SpeciesReferenceValue.class - [JAR]
├─ org.simulator.sbml.astnode.SpeciesValue.class - [JAR]
├─ org.simulator.sbml.astnode.StoichiometryValue.class - [JAR]
├─ org.simulator.sbml.astnode.TimesValue.class - [JAR]
fern.simulation
├─ fern.simulation.Simulator.class - [JAR]
fern.network.fernml
├─ fern.network.fernml.FernMLAnnotationManager.class - [JAR]
├─ fern.network.fernml.FernMLNetwork.class - [JAR]
org.simulator
├─ org.simulator.About.class - [JAR]
fern.network.modification
├─ fern.network.modification.CatalysedNetwork.class - [JAR]
├─ fern.network.modification.ExtractSubNetwork.class - [JAR]
├─ fern.network.modification.ModifierNetwork.class - [JAR]
├─ fern.network.modification.ReversibleNetwork.class - [JAR]
org.simulator.examples
├─ org.simulator.examples.BiomodelsExample.class - [JAR]
├─ org.simulator.examples.CompExample.class - [JAR]
├─ org.simulator.examples.ConstraintExample.class - [JAR]
├─ org.simulator.examples.FBAExample.class - [JAR]
├─ org.simulator.examples.OMEXExample.class - [JAR]
├─ org.simulator.examples.SEDMLExample.class - [JAR]
├─ org.simulator.examples.SimulatorExample.class - [JAR]
org.simulator.sbml
├─ org.simulator.sbml.AddMetaInfo.class - [JAR]
├─ org.simulator.sbml.AlgebraicRuleConverter.class - [JAR]
├─ org.simulator.sbml.ConstraintEvent.class - [JAR]
├─ org.simulator.sbml.ConstraintListener.class - [JAR]
├─ org.simulator.sbml.EquationSystem.class - [JAR]
├─ org.simulator.sbml.SBMLEventInProgress.class - [JAR]
├─ org.simulator.sbml.SBMLEventInProgressWithDelay.class - [JAR]
├─ org.simulator.sbml.SBMLValueHolder.class - [JAR]
├─ org.simulator.sbml.SBMLinterpreter.class - [JAR]
├─ org.simulator.sbml.SimpleConstraintListener.class - [JAR]
org.testsuite
├─ org.testsuite.SBMLTestSuiteRunnerWrapper.class - [JAR]
org.simulator.io
├─ org.simulator.io.CSVImporter.class - [JAR]
fern.simulation.controller
├─ fern.simulation.controller.AmountLowerThanController.class - [JAR]
├─ fern.simulation.controller.AndController.class - [JAR]
├─ fern.simulation.controller.DefaultController.class - [JAR]
├─ fern.simulation.controller.OrController.class - [JAR]
├─ fern.simulation.controller.SimulationController.class - [JAR]
fern.benchmark
├─ fern.benchmark.Benchmark.class - [JAR]
├─ fern.benchmark.RandomNumber.class - [JAR]
├─ fern.benchmark.SimulatorCorrectness.class - [JAR]
├─ fern.benchmark.SimulatorFireTypes.class - [JAR]
├─ fern.benchmark.SimulatorPerformance.class - [JAR]
├─ fern.benchmark.SimulatorRandomNumbers.class - [JAR]
├─ fern.benchmark.SimulatorTime.class - [JAR]
fern.tools.gnuplot
├─ fern.tools.gnuplot.ArrayMatrixAxes.class - [JAR]
├─ fern.tools.gnuplot.Axes.class - [JAR]
├─ fern.tools.gnuplot.CollectionAxes.class - [JAR]
├─ fern.tools.gnuplot.GnuPlot.class - [JAR]
├─ fern.tools.gnuplot.TransposedArrayMatrixAxes.class - [JAR]
