jar

org.genestrip : genestrip

Maven & Gradle

Apr 25, 2024
5 stars

Genestrip · Genestrip is a Bioinformatics tool for efficient read classification, filtering and k-mer counting for selected groups of species.

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Version Vulnerabilities Size Updated
0.5

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org.metagene.genestrip.refseq

├─ org.metagene.genestrip.refseq.AbstractRefSeqFastaReader.class - [JAR]

├─ org.metagene.genestrip.refseq.AbstractStoreFastaReader.class - [JAR]

├─ org.metagene.genestrip.refseq.AccessionFileProcessor.class - [JAR]

├─ org.metagene.genestrip.refseq.AccessionMap.class - [JAR]

├─ org.metagene.genestrip.refseq.AccessionMapImpl.class - [JAR]

├─ org.metagene.genestrip.refseq.RefSeqCategory.class - [JAR]

org.metagene.genestrip.goals.kraken

├─ org.metagene.genestrip.goals.kraken.KrakenResCountGoal.class - [JAR]

org.metagene.genestrip.store

├─ org.metagene.genestrip.store.KMerSortedArray.class - [JAR]

├─ org.metagene.genestrip.store.KMerStore.class - [JAR]

├─ org.metagene.genestrip.store.KMerStoreFactory.class - [JAR]

├─ org.metagene.genestrip.store.KMerStoreWrapper.class - [JAR]

├─ org.metagene.genestrip.store.KMerTrie.class - [JAR]

├─ org.metagene.genestrip.store.KMerUniqueCounter.class - [JAR]

├─ org.metagene.genestrip.store.KMerUniqueCounterBits.class - [JAR]

├─ org.metagene.genestrip.store.KMerUniqueCounterMap.class - [JAR]

org.metagene.genestrip.make

├─ org.metagene.genestrip.make.FileDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.make.FileGoal.class - [JAR]

├─ org.metagene.genestrip.make.FileListGoal.class - [JAR]

├─ org.metagene.genestrip.make.Goal.class - [JAR]

├─ org.metagene.genestrip.make.Maker.class - [JAR]

├─ org.metagene.genestrip.make.ObjectGoal.class - [JAR]

org.metagene.genestrip.genbank

├─ org.metagene.genestrip.genbank.AssemblySummaryReader.class - [JAR]

org.metagene.genestrip.kraken

├─ org.metagene.genestrip.kraken.KrakenExecutor.class - [JAR]

├─ org.metagene.genestrip.kraken.KrakenResultListener.class - [JAR]

├─ org.metagene.genestrip.kraken.KrakenResultProcessor.class - [JAR]

├─ org.metagene.genestrip.kraken.KrakenStreamPumper.class - [JAR]

org.metagene.genestrip.fastq

├─ org.metagene.genestrip.fastq.AbstractFastqReader.class - [JAR]

├─ org.metagene.genestrip.fastq.FastqReaderInterruptedException.class - [JAR]

org.metagene.genestrip

├─ org.metagene.genestrip.GSConfig.class - [JAR]

├─ org.metagene.genestrip.GSMaker.class - [JAR]

├─ org.metagene.genestrip.GSProject.class - [JAR]

├─ org.metagene.genestrip.Main.class - [JAR]

org.metagene.genestrip.fastqgen

├─ org.metagene.genestrip.fastqgen.FastQWriter.class - [JAR]

├─ org.metagene.genestrip.fastqgen.KMerFastqGenerator.class - [JAR]

org.metagene.genestrip.goals.genbank

├─ org.metagene.genestrip.goals.genbank.AssemblyFileDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.genbank.FastaFilesFromGenbankGoal.class - [JAR]

├─ org.metagene.genestrip.goals.genbank.FastaFilesGenbankDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.genbank.TaxNodesFromGenbankGoal.class - [JAR]

org.metagene.genestrip.goals

├─ org.metagene.genestrip.goals.AdditionalFastasGoal.class - [JAR]

├─ org.metagene.genestrip.goals.DB2FastqGoal.class - [JAR]

├─ org.metagene.genestrip.goals.DB2FastqTaxNodesGoal.class - [JAR]

├─ org.metagene.genestrip.goals.FilterGoal.class - [JAR]

├─ org.metagene.genestrip.goals.MatchGoal.class - [JAR]

├─ org.metagene.genestrip.goals.MultiFileGoal.class - [JAR]

├─ org.metagene.genestrip.goals.MultiMatchGoal.class - [JAR]

├─ org.metagene.genestrip.goals.StoreInfoGoal.class - [JAR]

├─ org.metagene.genestrip.goals.TaxIdFileDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.TaxNodesGoal.class - [JAR]

org.metagene.genestrip.io

├─ org.metagene.genestrip.io.BufferedLineReader.class - [JAR]

├─ org.metagene.genestrip.io.ByteCountingFileInputStream.class - [JAR]

├─ org.metagene.genestrip.io.StreamProvider.class - [JAR]

├─ org.metagene.genestrip.io.StreamingFileResource.class - [JAR]

├─ org.metagene.genestrip.io.StreamingResource.class - [JAR]

org.metagene.genestrip.bloom

├─ org.metagene.genestrip.bloom.FastqBloomFilter.class - [JAR]

├─ org.metagene.genestrip.bloom.MurmurCGATBloomFilter.class - [JAR]

org.metagene.genestrip.goals.refseq

├─ org.metagene.genestrip.goals.refseq.AccessionMapGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.AccessionMapSizeGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.BloomIndexGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.BloomIndexedGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.CategoriesGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.FillBloomFilterGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.FillSizeGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.FillStoreGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.FilledStoreGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.RefSeqCatalogDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.RefSeqDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.RefSeqFnaFilesDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.RefSeqRNumDownloadGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.UpdateStoreGoal.class - [JAR]

├─ org.metagene.genestrip.goals.refseq.UpdatedStoreGoal.class - [JAR]

org.metagene.genestrip.fasta

├─ org.metagene.genestrip.fasta.AbstractFastaReader.class - [JAR]

org.metagene.genestrip.match

├─ org.metagene.genestrip.match.CountsPerTaxid.class - [JAR]

├─ org.metagene.genestrip.match.FastqKMerMatcher.class - [JAR]

├─ org.metagene.genestrip.match.FastqKMerMatcher2.class - [JAR]

├─ org.metagene.genestrip.match.MatchingResult.class - [JAR]

├─ org.metagene.genestrip.match.ResultReporter.class - [JAR]

├─ org.metagene.genestrip.match.UniqueKMerEstimator.class - [JAR]

org.metagene.genestrip.tax

├─ org.metagene.genestrip.tax.TaxIdCollector.class - [JAR]

├─ org.metagene.genestrip.tax.TaxTree.class - [JAR]

org.metagene.genestrip.util

├─ org.metagene.genestrip.util.ByteArrayUtil.class - [JAR]

├─ org.metagene.genestrip.util.CGAT.class - [JAR]

├─ org.metagene.genestrip.util.CGATLongBuffer.class - [JAR]

├─ org.metagene.genestrip.util.CGATRingBuffer.class - [JAR]

├─ org.metagene.genestrip.util.DefaultExecutorServiceBundle.class - [JAR]

├─ org.metagene.genestrip.util.DigitTrie.class - [JAR]

├─ org.metagene.genestrip.util.ExecutorServiceBundle.class - [JAR]

├─ org.metagene.genestrip.util.GSLogFactory.class - [JAR]

├─ org.metagene.genestrip.util.LargeBitVector.class - [JAR]

├─ org.metagene.genestrip.util.LargeShortVector.class - [JAR]

├─ org.metagene.genestrip.util.StringLongDigitTrie.class - [JAR]