View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window core_spark1_2.10-0.21.1.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.bdgenomics.adam.rdd.read
├─ org.bdgenomics.adam.rdd.read.ADAMBAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ADAMBAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ADAMCRAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ADAMCRAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ADAMSAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ADAMSAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AlignedReadRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AlignmentRecordArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AlignmentRecordArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AlignmentRecordRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AnySAMInFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AnySAMInFormatterCompanion.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.AnySAMOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.BAMInFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.DuplicateMetrics.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.FlagStat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.FlagStatMetrics.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.FragmentIterator.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.IncorrectMDTagException.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.InstrumentedADAMBAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.InstrumentedADAMBAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.InstrumentedADAMCRAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.InstrumentedADAMCRAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.InstrumentedADAMSAMOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.InstrumentedADAMSAMOutputFormatHeaderLess.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.MDTagging.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.MarkDuplicates.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ReferencePositionPair.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.ReferencePositionPairSerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.SAMInFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.SingleReadBucket.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.SingleReadBucketSerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.UnalignedReadRDD.class - [JAR]
org.bdgenomics.adam.projections
├─ org.bdgenomics.adam.projections.AlignmentRecordField.class - [JAR]
├─ org.bdgenomics.adam.projections.ContigField.class - [JAR]
├─ org.bdgenomics.adam.projections.DbxrefField.class - [JAR]
├─ org.bdgenomics.adam.projections.FeatureField.class - [JAR]
├─ org.bdgenomics.adam.projections.FieldEnumeration.class - [JAR]
├─ org.bdgenomics.adam.projections.FieldValue.class - [JAR]
├─ org.bdgenomics.adam.projections.Filter.class - [JAR]
├─ org.bdgenomics.adam.projections.FragmentField.class - [JAR]
├─ org.bdgenomics.adam.projections.GenotypeField.class - [JAR]
├─ org.bdgenomics.adam.projections.NucleotideContigFragmentField.class - [JAR]
├─ org.bdgenomics.adam.projections.OntologyTermField.class - [JAR]
├─ org.bdgenomics.adam.projections.Projection.class - [JAR]
├─ org.bdgenomics.adam.projections.ReadField.class - [JAR]
├─ org.bdgenomics.adam.projections.RecordGroupMetadataField.class - [JAR]
├─ org.bdgenomics.adam.projections.SampleField.class - [JAR]
├─ org.bdgenomics.adam.projections.SequenceField.class - [JAR]
├─ org.bdgenomics.adam.projections.SliceField.class - [JAR]
├─ org.bdgenomics.adam.projections.TranscriptEffectField.class - [JAR]
├─ org.bdgenomics.adam.projections.VariantAnnotationField.class - [JAR]
├─ org.bdgenomics.adam.projections.VariantCallingAnnotationsField.class - [JAR]
├─ org.bdgenomics.adam.projections.VariantField.class - [JAR]
org.bdgenomics.adam.rich
├─ org.bdgenomics.adam.rich.DecadentRead.class - [JAR]
├─ org.bdgenomics.adam.rich.ReferenceSequenceContext.class - [JAR]
├─ org.bdgenomics.adam.rich.RichAlignmentRecord.class - [JAR]
├─ org.bdgenomics.adam.rich.RichCigar.class - [JAR]
├─ org.bdgenomics.adam.rich.RichVariant.class - [JAR]
org.bdgenomics.adam.rdd.feature
├─ org.bdgenomics.adam.rdd.feature.BEDParser.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.CoverageArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.CoverageArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.CoverageRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.FeatureArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.FeatureArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.FeatureOrdering.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.FeatureParser.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.FeatureRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.Features.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.GFF3Parser.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.GTFParser.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.IntervalListParser.class - [JAR]
├─ org.bdgenomics.adam.rdd.feature.NarrowPeakParser.class - [JAR]
org.bdgenomics.adam.models
├─ org.bdgenomics.adam.models.Alphabet.class - [JAR]
├─ org.bdgenomics.adam.models.Attribute.class - [JAR]
├─ org.bdgenomics.adam.models.Coverage.class - [JAR]
├─ org.bdgenomics.adam.models.DNAAlphabet.class - [JAR]
├─ org.bdgenomics.adam.models.IndelTable.class - [JAR]
├─ org.bdgenomics.adam.models.MdTag.class - [JAR]
├─ org.bdgenomics.adam.models.MdTagEvent.class - [JAR]
├─ org.bdgenomics.adam.models.MultiContigNonoverlappingRegions.class - [JAR]
├─ org.bdgenomics.adam.models.NonoverlappingRegions.class - [JAR]
├─ org.bdgenomics.adam.models.OptionalPositionOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.OptionalReferenceOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.OptionalRegionOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.ProgramRecord.class - [JAR]
├─ org.bdgenomics.adam.models.QualityScore.class - [JAR]
├─ org.bdgenomics.adam.models.RecordGroup.class - [JAR]
├─ org.bdgenomics.adam.models.RecordGroupDictionary.class - [JAR]
├─ org.bdgenomics.adam.models.ReferenceOrdering.class - [JAR]
├─ org.bdgenomics.adam.models.ReferencePosition.class - [JAR]
├─ org.bdgenomics.adam.models.ReferencePositionSerializer.class - [JAR]
├─ org.bdgenomics.adam.models.ReferenceRegion.class - [JAR]
├─ org.bdgenomics.adam.models.ReferenceRegionSerializer.class - [JAR]
├─ org.bdgenomics.adam.models.SAMFileHeaderWritable.class - [JAR]
├─ org.bdgenomics.adam.models.SequenceDictionary.class - [JAR]
├─ org.bdgenomics.adam.models.SequenceRecord.class - [JAR]
├─ org.bdgenomics.adam.models.SnpTable.class - [JAR]
├─ org.bdgenomics.adam.models.Symbol.class - [JAR]
├─ org.bdgenomics.adam.models.TagType.class - [JAR]
├─ org.bdgenomics.adam.models.VCFHeaderWritable.class - [JAR]
├─ org.bdgenomics.adam.models.VariantContext.class - [JAR]
├─ org.bdgenomics.adam.models.VariantContextSerializer.class - [JAR]
org.bdgenomics.adam.converters
├─ org.bdgenomics.adam.converters.AlignmentRecordConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.DefaultHeaderLines.class - [JAR]
├─ org.bdgenomics.adam.converters.FastaConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.FastqRecordConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.FragmentCollector.class - [JAR]
├─ org.bdgenomics.adam.converters.FragmentConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.SAMRecordConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.TranscriptEffectConverter.class - [JAR]
├─ org.bdgenomics.adam.converters.VariantContextConverter.class - [JAR]
org.bdgenomics.adam.algorithms.smithwaterman
├─ org.bdgenomics.adam.algorithms.smithwaterman.SmithWaterman.class - [JAR]
├─ org.bdgenomics.adam.algorithms.smithwaterman.SmithWatermanConstantGapScoring.class - [JAR]
├─ org.bdgenomics.adam.algorithms.smithwaterman.SmithWatermanGapScoringFromFn.class - [JAR]
org.bdgenomics.adam.instrumentation
├─ org.bdgenomics.adam.instrumentation.Timers.class - [JAR]
org.bdgenomics.adam.rdd.read.realignment
├─ org.bdgenomics.adam.rdd.read.realignment.IndelRealignmentTarget.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.IndelRealignmentTargetSerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.RealignIndels.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.RealignmentTargetFinder.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.TargetOrdering.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.TargetSet.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.TargetSetSerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.ZippedTargetOrdering.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.ZippedTargetSet.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.realignment.ZippedTargetSetSerializer.class - [JAR]
org.bdgenomics.adam.util
├─ org.bdgenomics.adam.util.AttributeUtils.class - [JAR]
├─ org.bdgenomics.adam.util.IndexedFastaFile.class - [JAR]
├─ org.bdgenomics.adam.util.ParquetFileTraversable.class - [JAR]
├─ org.bdgenomics.adam.util.ParquetLogger.class - [JAR]
├─ org.bdgenomics.adam.util.PhredUtils.class - [JAR]
├─ org.bdgenomics.adam.util.ReferenceContigMap.class - [JAR]
├─ org.bdgenomics.adam.util.ReferenceFile.class - [JAR]
├─ org.bdgenomics.adam.util.TwoBitFile.class - [JAR]
├─ org.bdgenomics.adam.util.TwoBitFileSerializer.class - [JAR]
├─ org.bdgenomics.adam.util.TwoBitRecord.class - [JAR]
org.bdgenomics.adam.rdd.variant
├─ org.bdgenomics.adam.rdd.variant.ADAMHeaderlessVCFOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.ADAMVCFOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.GenotypeArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.GenotypeArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.GenotypeRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VCFInFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VCFOutFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VariantArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VariantArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VariantContextArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VariantContextArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VariantContextRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.variant.VariantRDD.class - [JAR]
org.bdgenomics.adam.serialization
├─ org.bdgenomics.adam.serialization.ADAMKryoRegistrator.class - [JAR]
├─ org.bdgenomics.adam.serialization.AvroSerializer.class - [JAR]
├─ org.bdgenomics.adam.serialization.InputStreamWithDecoder.class - [JAR]
org.bdgenomics.adam.algorithms.consensus
├─ org.bdgenomics.adam.algorithms.consensus.Consensus.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGenerator.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGeneratorFromKnowns.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGeneratorFromReads.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.ConsensusGeneratorFromSmithWaterman.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.NormalizationUtils.class - [JAR]
├─ org.bdgenomics.adam.algorithms.consensus.UnionConsensusGenerator.class - [JAR]
org.bdgenomics.adam.rdd
├─ org.bdgenomics.adam.rdd.ADAMContext.class - [JAR]
├─ org.bdgenomics.adam.rdd.ADAMRDDFunctions.class - [JAR]
├─ org.bdgenomics.adam.rdd.ADAMSaveAnyArgs.class - [JAR]
├─ org.bdgenomics.adam.rdd.AppendableIterator.class - [JAR]
├─ org.bdgenomics.adam.rdd.AvroGenomicRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.AvroReadGroupGenomicRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.ConcreteADAMRDDFunctions.class - [JAR]
├─ org.bdgenomics.adam.rdd.FileFilter.class - [JAR]
├─ org.bdgenomics.adam.rdd.FileMerger.class - [JAR]
├─ org.bdgenomics.adam.rdd.FullOuterShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.FullOuterSortedIntervalPartitionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.GenericGenomicRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.GenomeBins.class - [JAR]
├─ org.bdgenomics.adam.rdd.GenomicPositionPartitioner.class - [JAR]
├─ org.bdgenomics.adam.rdd.GenomicRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.GenomicRegionPartitioner.class - [JAR]
├─ org.bdgenomics.adam.rdd.InFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.InFormatterCompanion.class - [JAR]
├─ org.bdgenomics.adam.rdd.InFormatterRunner.class - [JAR]
├─ org.bdgenomics.adam.rdd.InnerShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.InnerShuffleRegionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.rdd.InnerSortedIntervalPartitionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.InnerTreeRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.InnerTreeRegionJoinAndGroupByRight.class - [JAR]
├─ org.bdgenomics.adam.rdd.InstrumentedADAMAvroParquetOutputFormat.class - [JAR]
├─ org.bdgenomics.adam.rdd.JavaSaveArgs.class - [JAR]
├─ org.bdgenomics.adam.rdd.LeftOuterShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.LeftOuterSortedIntervalPartitionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.LocatableReferenceRegion.class - [JAR]
├─ org.bdgenomics.adam.rdd.ManualRegionPartitioner.class - [JAR]
├─ org.bdgenomics.adam.rdd.MultisampleAvroGenomicRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.MultisampleGenomicRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.OutFormatter.class - [JAR]
├─ org.bdgenomics.adam.rdd.OutFormatterRunner.class - [JAR]
├─ org.bdgenomics.adam.rdd.ReferencePartitioner.class - [JAR]
├─ org.bdgenomics.adam.rdd.RegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.RightOuterShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.RightOuterShuffleRegionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.rdd.RightOuterSortedIntervalPartitionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.rdd.RightOuterTreeRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.RightOuterTreeRegionJoinAndGroupByRight.class - [JAR]
├─ org.bdgenomics.adam.rdd.SAMHeaderWriter.class - [JAR]
├─ org.bdgenomics.adam.rdd.ShuffleRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.SortedIntervalPartitionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.SortedIntervalPartitionJoinAndGroupByLeft.class - [JAR]
├─ org.bdgenomics.adam.rdd.SortedIntervalPartitionJoinWithVictims.class - [JAR]
├─ org.bdgenomics.adam.rdd.TreeRegionJoin.class - [JAR]
├─ org.bdgenomics.adam.rdd.Unaligned.class - [JAR]
├─ org.bdgenomics.adam.rdd.VCFHeaderUtils.class - [JAR]
├─ org.bdgenomics.adam.rdd.VictimlessSortedIntervalPartitionJoin.class - [JAR]
org.bdgenomics.adam.io
├─ org.bdgenomics.adam.io.FastqRecordReader.class - [JAR]
├─ org.bdgenomics.adam.io.InterleavedFastqInputFormat.class - [JAR]
├─ org.bdgenomics.adam.io.SingleFastqInputFormat.class - [JAR]
org.bdgenomics.adam.rdd.read.recalibration
├─ org.bdgenomics.adam.rdd.read.recalibration.AbstractCovariate.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.Aggregate.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.BaseQualityRecalibration.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.Covariate.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.CovariateKey.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.CovariateSpace.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.CycleCovariate.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.DinucCovariate.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.ExtrasTables.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.Observation.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.ObservationAccumulator.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.ObservationTable.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.QualityTable.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.RecalibrationTable.class - [JAR]
├─ org.bdgenomics.adam.rdd.read.recalibration.Recalibrator.class - [JAR]
org.bdgenomics.adam.rdd.fragment
├─ org.bdgenomics.adam.rdd.fragment.FragmentArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.fragment.FragmentArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.fragment.FragmentRDD.class - [JAR]
├─ org.bdgenomics.adam.rdd.fragment.InterleavedFASTQInFormatter.class - [JAR]
org.bdgenomics.adam.rdd.contig
├─ org.bdgenomics.adam.rdd.contig.FlankReferenceFragments.class - [JAR]
├─ org.bdgenomics.adam.rdd.contig.NucleotideContigFragmentArray.class - [JAR]
├─ org.bdgenomics.adam.rdd.contig.NucleotideContigFragmentArraySerializer.class - [JAR]
├─ org.bdgenomics.adam.rdd.contig.NucleotideContigFragmentRDD.class - [JAR]
