View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window biodata-tools-2.10.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.opencb.biodata.tools.alignment.exceptions
├─ org.opencb.biodata.tools.alignment.exceptions.AlignmentCoverageException.class - [JAR]
org.opencb.biodata.tools.variant
├─ org.opencb.biodata.tools.variant.LeftAligner.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantDeduplicationTask.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantJsonReader.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantNormalizer.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantOptions.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantReferenceBlockCreatorTask.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantSorterTask.class - [JAR]
├─ org.opencb.biodata.tools.variant.VariantVcfHtsjdkReader.class - [JAR]
├─ org.opencb.biodata.tools.variant.VcfFileReader.class - [JAR]
├─ org.opencb.biodata.tools.variant.VcfManager.class - [JAR]
├─ org.opencb.biodata.tools.variant.VcfUtils.class - [JAR]
org.opencb.biodata.tools.variant.converters.ga4gh
├─ org.opencb.biodata.tools.variant.converters.ga4gh.Ga4ghCallSetConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.ga4gh.Ga4ghVariantConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.ga4gh.Ga4ghVariantSetConverter.class - [JAR]
org.opencb.biodata.tools.variant.exceptions
├─ org.opencb.biodata.tools.variant.exceptions.VariantNormalizerException.class - [JAR]
org.opencb.biodata.tools.alignment.stats
├─ org.opencb.biodata.tools.alignment.stats.AlignmentGlobalStats.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.AlignmentGlobalStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.AvroAlignmentGlobalStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.ProtoAlignmentGlobalStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.SamRecordAlignmentGlobalStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.SequenceInfo.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.SequenceKmers.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.SequenceKmersCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.SequenceStats.class - [JAR]
├─ org.opencb.biodata.tools.alignment.stats.SequenceStatsCalculator.class - [JAR]
org.opencb.biodata.tools.alignment.iterators
├─ org.opencb.biodata.tools.alignment.iterators.AvroFileIterator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.iterators.BamIterator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.iterators.SAMRecordToAvroReadAlignmentBamIterator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.iterators.SAMRecordToProtoReadAlignmentBamIterator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.iterators.SamRecordBamIterator.class - [JAR]
org.opencb.biodata.tools.pedigree
├─ org.opencb.biodata.tools.pedigree.MendelianError.class - [JAR]
├─ org.opencb.biodata.tools.pedigree.ModeOfInheritance.class - [JAR]
org.opencb.biodata.tools.sequence
├─ org.opencb.biodata.tools.sequence.FastaIndex.class - [JAR]
├─ org.opencb.biodata.tools.sequence.FastaIndexManager.class - [JAR]
├─ org.opencb.biodata.tools.sequence.FastqRecordToReadBiConverter.class - [JAR]
├─ org.opencb.biodata.tools.sequence.SamtoolsFastaIndex.class - [JAR]
├─ org.opencb.biodata.tools.sequence.SequenceAdaptor.class - [JAR]
org.opencb.biodata.tools.alignment.coverage
├─ org.opencb.biodata.tools.alignment.coverage.AvroRegionCoverageCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.coverage.RegionCoverageCalculator.class - [JAR]
├─ org.opencb.biodata.tools.alignment.coverage.SamRecordRegionCoverageCalculator.class - [JAR]
org.opencb.biodata.tools.variant.stats.writer
├─ org.opencb.biodata.tools.variant.stats.writer.VariantStatsPopulationFrequencyExporter.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.writer.VariantStatsTsvExporter.class - [JAR]
org.opencb.biodata.tools.alignment
├─ org.opencb.biodata.tools.alignment.AlignmentOptions.class - [JAR]
├─ org.opencb.biodata.tools.alignment.BamManager.class - [JAR]
├─ org.opencb.biodata.tools.alignment.BamUtils.class - [JAR]
org.opencb.biodata.tools.alignment.converters
├─ org.opencb.biodata.tools.alignment.converters.AlignmentBiConverter.class - [JAR]
├─ org.opencb.biodata.tools.alignment.converters.SAMRecordToAvroReadAlignmentBiConverter.class - [JAR]
├─ org.opencb.biodata.tools.alignment.converters.SAMRecordToProtoReadAlignmentBiConverter.class - [JAR]
org.opencb.biodata.tools.feature
├─ org.opencb.biodata.tools.feature.BedManager.class - [JAR]
├─ org.opencb.biodata.tools.feature.BigWigManager.class - [JAR]
├─ org.opencb.biodata.tools.feature.FeatureManager.class - [JAR]
├─ org.opencb.biodata.tools.feature.WigUtils.class - [JAR]
org.opencb.biodata.tools.variant.converters
├─ org.opencb.biodata.tools.variant.converters.VCFExporter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.VariantContextConverter.class - [JAR]
org.opencb.biodata.tools.variant.converters.proto
├─ org.opencb.biodata.tools.variant.converters.proto.VariantAvroToVariantProtoConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.proto.VariantContextToVariantProtoConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.proto.VariantProtoToVariantContextConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.proto.VariantToProtoVcfRecord.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.proto.VariantToVcfSliceConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.proto.VcfRecordProtoToVariantConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.proto.VcfSliceToVariantListConverter.class - [JAR]
org.opencb.biodata.tools.variant.filters
├─ org.opencb.biodata.tools.variant.filters.VariantAvroFilters.class - [JAR]
├─ org.opencb.biodata.tools.variant.filters.VariantContextFilters.class - [JAR]
├─ org.opencb.biodata.tools.variant.filters.VariantFilters.class - [JAR]
├─ org.opencb.biodata.tools.variant.filters.VariantProtoFilters.class - [JAR]
org.opencb.biodata.tools.variant.converters.avro
├─ org.opencb.biodata.tools.variant.converters.avro.VCFHeaderToAvroVcfHeaderConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VCFHeaderToVariantFileHeaderConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VCFHeaderToVariantFileMetadataConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantAvroToVariantContextConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantContextToVariantConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantFileHeaderToVCFHeaderConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantSourceToVCFHeaderConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantStatsToPopulationFrequencyConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantStatsToTsvConverter.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.avro.VariantStudyMetadataToVCFHeaderConverter.class - [JAR]
org.opencb.biodata.tools.alignment.filters
├─ org.opencb.biodata.tools.alignment.filters.AlignmentFilters.class - [JAR]
├─ org.opencb.biodata.tools.alignment.filters.ReadAlignmentFilters.class - [JAR]
├─ org.opencb.biodata.tools.alignment.filters.SamRecordFilters.class - [JAR]
org.opencb.biodata.tools.variant.simulator
├─ org.opencb.biodata.tools.variant.simulator.VariantSimulator.class - [JAR]
├─ org.opencb.biodata.tools.variant.simulator.VariantSimulatorConfiguration.class - [JAR]
org.opencb.biodata.tools.commons
├─ org.opencb.biodata.tools.commons.BiConverter.class - [JAR]
├─ org.opencb.biodata.tools.commons.ChunkFrequencyManager.class - [JAR]
├─ org.opencb.biodata.tools.commons.CommonsFilters.class - [JAR]
├─ org.opencb.biodata.tools.commons.Converter.class - [JAR]
org.opencb.biodata.tools.variant.writers
├─ org.opencb.biodata.tools.variant.writers.EnsemblVepOutputWriter.class - [JAR]
org.opencb.biodata.tools.variant.merge
├─ org.opencb.biodata.tools.variant.merge.VariantAlternateRearranger.class - [JAR]
├─ org.opencb.biodata.tools.variant.merge.VariantMerger.class - [JAR]
org.opencb.biodata.tools.variant.algorithm
├─ org.opencb.biodata.tools.variant.algorithm.IdentityByDescentClustering.class - [JAR]
├─ org.opencb.biodata.tools.variant.algorithm.IdentityByStateClustering.class - [JAR]
org.opencb.biodata.tools.clinical
├─ org.opencb.biodata.tools.clinical.ClinicalVariantCreator.class - [JAR]
├─ org.opencb.biodata.tools.clinical.DefaultClinicalVariantCreator.class - [JAR]
├─ org.opencb.biodata.tools.clinical.DiseasePanelParsers.class - [JAR]
├─ org.opencb.biodata.tools.clinical.TeamClinicalVariantCreator.class - [JAR]
├─ org.opencb.biodata.tools.clinical.TieringClinicalVariantCreator.class - [JAR]
org.opencb.biodata.tools.variant.stats
├─ org.opencb.biodata.tools.variant.stats.AggregationUtils.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.SampleVariantStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.VariantAggregatedEVSStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.VariantAggregatedExacStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.VariantAggregatedStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.VariantSetStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.VariantStatsCalculator.class - [JAR]
├─ org.opencb.biodata.tools.variant.stats.VariantStatsPedigree.class - [JAR]
org.opencb.biodata.tools.variant.scores
├─ org.opencb.biodata.tools.variant.scores.AcmgVariantClassifier.class - [JAR]
├─ org.opencb.biodata.tools.variant.scores.HardyWeinbergScoreCalculatorTask.class - [JAR]
org.opencb.biodata.tools.variant.converters.ga4gh.factories
├─ org.opencb.biodata.tools.variant.converters.ga4gh.factories.AvroGa4GhVariantFactory.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.ga4gh.factories.Ga4ghVariantFactory.class - [JAR]
├─ org.opencb.biodata.tools.variant.converters.ga4gh.factories.ProtoGa4GhVariantFactory.class - [JAR]
org.opencb.biodata.tools.variant.metadata
├─ org.opencb.biodata.tools.variant.metadata.VariantMetadataManager.class - [JAR]
├─ org.opencb.biodata.tools.variant.metadata.VariantMetadataUtils.class - [JAR]
org.opencb.biodata.tools.variant.iterators
├─ org.opencb.biodata.tools.variant.iterators.VariantContextToAvroVariantVcfIterator.class - [JAR]
├─ org.opencb.biodata.tools.variant.iterators.VariantContextToProtoVariantVcfIterator.class - [JAR]
├─ org.opencb.biodata.tools.variant.iterators.VariantContextVcfIterator.class - [JAR]
├─ org.opencb.biodata.tools.variant.iterators.VcfIterator.class - [JAR]
org.opencb.biodata.tools.variant.normalizer.extensions
├─ org.opencb.biodata.tools.variant.normalizer.extensions.CustomNormalizerExtension.class - [JAR]
├─ org.opencb.biodata.tools.variant.normalizer.extensions.SvVariantNormalizerExtension.class - [JAR]
├─ org.opencb.biodata.tools.variant.normalizer.extensions.VafVariantNormalizerExtension.class - [JAR]
├─ org.opencb.biodata.tools.variant.normalizer.extensions.VariantNormalizerExtension.class - [JAR]
├─ org.opencb.biodata.tools.variant.normalizer.extensions.VariantNormalizerExtensionFactory.class - [JAR]
├─ org.opencb.biodata.tools.variant.normalizer.extensions.VariantNormalizerExtensionFileToSample.class - [JAR]