View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window opencga-analysis-2.8.3.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.opencb.opencga.analysis.wrappers.executors
├─ org.opencb.opencga.analysis.wrappers.executors.DockerWrapperAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.executors.OpenCgaWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.mendelianError
├─ org.opencb.opencga.analysis.variant.mendelianError.MendelianErrorAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.mendelianError.MendelianErrorLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.family.qc
├─ org.opencb.opencga.analysis.family.qc.FamilyQcAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.family.qc.FamilyQcLocalAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.family.qc.IBDComputation.class - [JAR]
org.opencb.opencga.analysis.variant.knockout
├─ org.opencb.opencga.analysis.variant.knockout.KnockoutAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.knockout.KnockoutAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.variant.knockout.KnockoutAnalysisResultReader.class - [JAR]
├─ org.opencb.opencga.analysis.variant.knockout.KnockoutLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.clinical.exomiser
├─ org.opencb.opencga.analysis.clinical.exomiser.ExomiserClinicalVariantCreator.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.exomiser.ExomiserInterpretationAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.exomiser.ExomiserTranscriptAnnotation.class - [JAR]
org.opencb.opencga.analysis
├─ org.opencb.opencga.analysis.AnalysisUtils.class - [JAR]
├─ org.opencb.opencga.analysis.ConfigurationUtils.class - [JAR]
├─ org.opencb.opencga.analysis.ResourceUtils.class - [JAR]
├─ org.opencb.opencga.analysis.StorageManager.class - [JAR]
├─ org.opencb.opencga.analysis.StorageToolExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.manager
├─ org.opencb.opencga.analysis.variant.manager.CatalogUtils.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.VariantStorageManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.VariantStorageToolExecutor.class - [JAR]
org.opencb.opencga.analysis.sample.qc
├─ org.opencb.opencga.analysis.sample.qc.SampleQcAnalysis.class - [JAR]
org.opencb.opencga.analysis.clinical.team
├─ org.opencb.opencga.analysis.clinical.team.TeamInterpretationAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.team.TeamInterpretationAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.team.TeamInterpretationConfiguration.class - [JAR]
org.opencb.opencga.analysis.sample
├─ org.opencb.opencga.analysis.sample.SampleIndexTask.class - [JAR]
├─ org.opencb.opencga.analysis.sample.SampleTsvAnnotationLoader.class - [JAR]
org.opencb.opencga.analysis.variant.manager.operations
├─ org.opencb.opencga.analysis.variant.manager.operations.OperationManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.operations.VariantAnnotationOperationManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.operations.VariantDeleteOperationManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.operations.VariantExportOperationManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.operations.VariantFileIndexerOperationManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.operations.VariantImportOperationManager.class - [JAR]
├─ org.opencb.opencga.analysis.variant.manager.operations.VariantStatsOperationManager.class - [JAR]
org.opencb.opencga.analysis.variant.julie
├─ org.opencb.opencga.analysis.variant.julie.JulieTool.class - [JAR]
org.opencb.opencga.analysis.individual
├─ org.opencb.opencga.analysis.individual.IndividualIndexTask.class - [JAR]
├─ org.opencb.opencga.analysis.individual.IndividualTsvAnnotationLoader.class - [JAR]
org.opencb.opencga.analysis.variant.samples
├─ org.opencb.opencga.analysis.variant.samples.SampleEligibilityAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.samples.SampleEligibilityAnalysisResult.class - [JAR]
├─ org.opencb.opencga.analysis.variant.samples.SampleVariantFilterAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.samples.TreeQuery.class - [JAR]
├─ org.opencb.opencga.analysis.variant.samples.VariantQueryOptimizer.class - [JAR]
org.opencb.opencga.analysis.family
├─ org.opencb.opencga.analysis.family.FamilyIndexTask.class - [JAR]
├─ org.opencb.opencga.analysis.family.FamilyTsvAnnotationLoader.class - [JAR]
├─ org.opencb.opencga.analysis.family.PedigreeGraphAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.family.PedigreeGraphInitAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.family.PedigreeGraphLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.operations
├─ org.opencb.opencga.analysis.variant.operations.OperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantAggregateFamilyOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantAggregateOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantAnnotationDeleteOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantAnnotationIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantAnnotationRebuilderOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantAnnotationSaveOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantFamilyIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantFileDeleteOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantFileIndexJobLauncherTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantPruneOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantSampleDeleteOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantScoreDeleteOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantScoreIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantSecondaryAnnotationIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantSecondaryIndexSamplesDeleteOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantSecondaryIndexSamplesOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantSecondarySampleIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantStatsDeleteOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantStatsIndexOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantStorageMetadataRepairTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantStorageMetadataSynchronizeOperationTool.class - [JAR]
├─ org.opencb.opencga.analysis.variant.operations.VariantStudyDeleteOperationTool.class - [JAR]
org.opencb.opencga.analysis.variant.relatedness
├─ org.opencb.opencga.analysis.variant.relatedness.IBDRelatednessLocalAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.variant.relatedness.RelatednessAnalysis.class - [JAR]
org.opencb.opencga.analysis.wrappers.rvtests
├─ org.opencb.opencga.analysis.wrappers.rvtests.RvtestsWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.rvtests.RvtestsWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.clinical.rga
├─ org.opencb.opencga.analysis.clinical.rga.AuxiliarRgaAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.rga.RgaAnalysis.class - [JAR]
org.opencb.opencga.analysis.clinical.tiering
├─ org.opencb.opencga.analysis.clinical.tiering.CancerTieringInterpretationAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.tiering.CancerTieringInterpretationAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.tiering.CancerTieringInterpretationConfiguration.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.tiering.TieringInterpretationAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.tiering.TieringInterpretationAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.tiering.TieringInterpretationConfiguration.class - [JAR]
org.opencb.opencga.analysis.wrappers.exomiser
├─ org.opencb.opencga.analysis.wrappers.exomiser.ExomiserWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.exomiser.ExomiserWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.clinical.xnet
├─ org.opencb.opencga.analysis.clinical.xnet.BionetInterpretationConfiguration.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.xnet.XQueryInterpretationAnalysis.class - [JAR]
org.opencb.opencga.analysis.variant.hrdetect
├─ org.opencb.opencga.analysis.variant.hrdetect.HRDetectAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.hrdetect.HRDetectLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.individual.qc
├─ org.opencb.opencga.analysis.individual.qc.IndividualQcAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.individual.qc.IndividualQcLocalAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.individual.qc.IndividualQcUtils.class - [JAR]
├─ org.opencb.opencga.analysis.individual.qc.InferredSexComputation.class - [JAR]
├─ org.opencb.opencga.analysis.individual.qc.MendelianInconsistenciesComputation.class - [JAR]
org.opencb.opencga.analysis.wrappers.plink
├─ org.opencb.opencga.analysis.wrappers.plink.PlinkWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.plink.PlinkWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.gwas
├─ org.opencb.opencga.analysis.variant.gwas.GwasAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.gwas.GwasLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.tools
├─ org.opencb.opencga.analysis.tools.OpenCgaTool.class - [JAR]
├─ org.opencb.opencga.analysis.tools.OpenCgaToolScopeStudy.class - [JAR]
├─ org.opencb.opencga.analysis.tools.ToolExecutorFactory.class - [JAR]
├─ org.opencb.opencga.analysis.tools.ToolFactory.class - [JAR]
├─ org.opencb.opencga.analysis.tools.ToolRunner.class - [JAR]
org.opencb.opencga.analysis.variant
├─ org.opencb.opencga.analysis.variant.VariantExportTool.class - [JAR]
org.opencb.opencga.analysis.wrappers.picard
├─ org.opencb.opencga.analysis.wrappers.picard.PicardWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.picard.PicardWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.annotations
├─ org.opencb.opencga.analysis.annotations.TsvAnnotationLoader.class - [JAR]
org.opencb.opencga.analysis.wrappers.samtools
├─ org.opencb.opencga.analysis.wrappers.samtools.SamtoolsWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.samtools.SamtoolsWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.wrappers.deeptools
├─ org.opencb.opencga.analysis.wrappers.deeptools.DeeptoolsWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.deeptools.DeeptoolsWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.alignment.qc
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentFastQcMetricsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentFlagStatsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentGeneCoverageStatsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentGeneCoverageStatsLocalAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentHsMetricsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentQcAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.qc.AlignmentStatsAnalysis.class - [JAR]
org.opencb.opencga.analysis.models
├─ org.opencb.opencga.analysis.models.FileInfo.class - [JAR]
├─ org.opencb.opencga.analysis.models.IndividualPrivateUpdateParams.class - [JAR]
├─ org.opencb.opencga.analysis.models.SamplePrivateUpdateParams.class - [JAR]
├─ org.opencb.opencga.analysis.models.StudyInfo.class - [JAR]
org.opencb.opencga.analysis.panel
├─ org.opencb.opencga.analysis.panel.PanelImportTask.class - [JAR]
org.opencb.opencga.analysis.cohort
├─ org.opencb.opencga.analysis.cohort.CohortIndexTask.class - [JAR]
├─ org.opencb.opencga.analysis.cohort.CohortTsvAnnotationLoader.class - [JAR]
org.opencb.opencga.analysis.clinical.zetta
├─ org.opencb.opencga.analysis.clinical.zetta.ZettaInterpretationAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.zetta.ZettaInterpretationAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.zetta.ZettaInterpretationConfiguration.class - [JAR]
org.opencb.opencga.analysis.variant.genomePlot
├─ org.opencb.opencga.analysis.variant.genomePlot.GenomePlotAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.genomePlot.GenomePlotLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.stats
├─ org.opencb.opencga.analysis.variant.stats.CohortVariantStatsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.stats.CohortVariantStatsLocalAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.variant.stats.SampleVariantStatsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.stats.SampleVariantStatsLocalAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.variant.stats.VariantStatsAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.stats.VariantStatsLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.circos
├─ org.opencb.opencga.analysis.variant.circos.CircosAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.circos.CircosLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.file
├─ org.opencb.opencga.analysis.file.FetchAndRegisterTask.class - [JAR]
├─ org.opencb.opencga.analysis.file.FileDeleteTask.class - [JAR]
├─ org.opencb.opencga.analysis.file.FileIndexTask.class - [JAR]
├─ org.opencb.opencga.analysis.file.FileLinkTask.class - [JAR]
├─ org.opencb.opencga.analysis.file.FileTsvAnnotationLoader.class - [JAR]
├─ org.opencb.opencga.analysis.file.FileUnlinkTask.class - [JAR]
├─ org.opencb.opencga.analysis.file.PostLinkSampleAssociation.class - [JAR]
org.opencb.opencga.analysis.wrappers.bwa
├─ org.opencb.opencga.analysis.wrappers.bwa.BwaWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.bwa.BwaWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.variant.inferredSex
├─ org.opencb.opencga.analysis.variant.inferredSex.InferredSexAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.inferredSex.InferredSexLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.wrappers.fastqc
├─ org.opencb.opencga.analysis.wrappers.fastqc.FastqcWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.fastqc.FastqcWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.rga
├─ org.opencb.opencga.analysis.rga.AbstractRgaConverter.class - [JAR]
├─ org.opencb.opencga.analysis.rga.AuxiliarRgaDataModel.class - [JAR]
├─ org.opencb.opencga.analysis.rga.GeneRgaConverter.class - [JAR]
├─ org.opencb.opencga.analysis.rga.IndividualRgaConverter.class - [JAR]
├─ org.opencb.opencga.analysis.rga.RgaDataModel.class - [JAR]
├─ org.opencb.opencga.analysis.rga.RgaEngine.class - [JAR]
├─ org.opencb.opencga.analysis.rga.RgaManager.class - [JAR]
├─ org.opencb.opencga.analysis.rga.RgaQueryParams.class - [JAR]
├─ org.opencb.opencga.analysis.rga.RgaQueryParser.class - [JAR]
├─ org.opencb.opencga.analysis.rga.RgaUtils.class - [JAR]
├─ org.opencb.opencga.analysis.rga.VariantRgaConverter.class - [JAR]
org.opencb.opencga.analysis.variant.tdt
├─ org.opencb.opencga.analysis.variant.tdt.TdtAnalysis.class - [JAR]
org.opencb.opencga.analysis.templates
├─ org.opencb.opencga.analysis.templates.TemplateRunner.class - [JAR]
org.opencb.opencga.analysis.clinical
├─ org.opencb.opencga.analysis.clinical.ClinicalInterpretationAnalysisExecutor.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.ClinicalInterpretationManager.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.ClinicalUtils.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.InterpretationAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.clinical.InterpretationAnalysisConfiguration.class - [JAR]
org.opencb.opencga.analysis.rga.exceptions
├─ org.opencb.opencga.analysis.rga.exceptions.RgaException.class - [JAR]
org.opencb.opencga.analysis.variant.mutationalSignature
├─ org.opencb.opencga.analysis.variant.mutationalSignature.MutationalSignatureAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.variant.mutationalSignature.MutationalSignatureLocalAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.alignment
├─ org.opencb.opencga.analysis.alignment.AlignmentCoverageAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.AlignmentIndexOperation.class - [JAR]
├─ org.opencb.opencga.analysis.alignment.AlignmentStorageManager.class - [JAR]
org.opencb.opencga.analysis.job
├─ org.opencb.opencga.analysis.job.JobIndexTask.class - [JAR]
org.opencb.opencga.analysis.wrappers.gatk
├─ org.opencb.opencga.analysis.wrappers.gatk.GatkWrapperAnalysis.class - [JAR]
├─ org.opencb.opencga.analysis.wrappers.gatk.GatkWrapperAnalysisExecutor.class - [JAR]
org.opencb.opencga.analysis.rga.iterators
├─ org.opencb.opencga.analysis.rga.iterators.RgaIterator.class - [JAR]
├─ org.opencb.opencga.analysis.rga.iterators.SolrNativeIterator.class - [JAR]
org.opencb.opencga.analysis.variant.metadata
├─ org.opencb.opencga.analysis.variant.metadata.CatalogStorageMetadataSynchronizer.class - [JAR]
├─ org.opencb.opencga.analysis.variant.metadata.CatalogVariantMetadataFactory.class - [JAR]
