Download opencga-app.jar - @org.opencb.opencga

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Latest Version
All Versions
View Java Class Source Code in JAR file

Latest Version

Download org.opencb.opencga : opencga-app JAR file - Latest Versions:

Latest Stable: 2.8.3.jar

All Versions

Download org.opencb.opencga : opencga-app JAR file - All Versions:

Version	Vulnerabilities	Size	Updated
2.10.x	opencga-app-2.10.0.jar		1.23 MB	Jul 17, 2023
2.9.x	opencga-app-2.9.2.jar		1.23 MB	Jul 24, 2023
opencga-app-2.9.1.jar		1.23 MB	Jun 13, 2023
opencga-app-2.9.0.jar		1.23 MB	May 26, 2023
2.8.x	opencga-app-2.8.3.jar		1.23 MB	Aug 11, 2023
opencga-app-2.8.2.1.jar		1.23 MB	Jul 12, 2023
opencga-app-2.8.2.jar		1.23 MB	Jun 08, 2023
opencga-app-2.8.1.jar		1.23 MB	May 11, 2023
opencga-app-2.8.0.jar		1.23 MB	Apr 21, 2023
2.7.x	opencga-app-2.7.2.jar		1.21 MB	May 05, 2023
opencga-app-2.7.1.jar		1.21 MB	Mar 23, 2023
opencga-app-2.7.0.jar		1.21 MB	Feb 20, 2023
2.6.x	opencga-app-2.6.1.1.jar		1.21 MB	Feb 02, 2023
opencga-app-2.6.1.jar		1.21 MB	Jan 31, 2023
opencga-app-2.6.0.1.jar		1.21 MB	Jan 17, 2023
opencga-app-2.6.0.jar		1.21 MB	Jan 11, 2023
2.5.x	opencga-app-2.5.0.jar		1.19 MB	Nov 11, 2022
2.4.x	opencga-app-2.4.15.jar		1.20 MB	May 05, 2023
opencga-app-2.4.14.jar		1.20 MB	Mar 22, 2023
opencga-app-2.4.13.1.jar		1.20 MB	Feb 02, 2023
opencga-app-2.4.13.jar		1.20 MB	Jan 29, 2023
opencga-app-2.4.12.jar		1.20 MB	Dec 20, 2022
opencga-app-2.4.11.jar		1.19 MB	Nov 30, 2022
opencga-app-2.4.10.1.jar		1.19 MB	Dec 12, 2022
opencga-app-2.4.10.jar		1.19 MB	Oct 28, 2022
opencga-app-2.4.9.jar		1.19 MB	Oct 24, 2022
opencga-app-2.4.8.jar		1.19 MB	Oct 19, 2022
opencga-app-2.4.7.jar		1.19 MB	Oct 10, 2022
opencga-app-2.4.6.jar		1.19 MB	Oct 04, 2022
opencga-app-2.4.4.jar		1.17 MB	Sep 07, 2022
opencga-app-2.4.3.jar		1.17 MB	Aug 19, 2022
opencga-app-2.4.2.jar		1.15 MB	Aug 02, 2022
opencga-app-2.4.1.jar		1.14 MB	Jul 23, 2022
opencga-app-2.4.0.1.jar		1.15 MB	Jan 17, 2023
opencga-app-2.4.0.jar		1.15 MB	Jul 01, 2022
2.3.x	opencga-app-2.3.2.jar		1.12 MB	Jul 23, 2022
opencga-app-2.3.1.jar		1.13 MB	Jun 29, 2022
opencga-app-2.3.0.jar		1.13 MB	May 20, 2022
2.2.x	opencga-app-2.2.10.jar		1.08 MB	Nov 04, 2022
opencga-app-2.2.9.jar		1.08 MB	Oct 21, 2022
opencga-app-2.2.8.jar		1.08 MB	Sep 30, 2022
opencga-app-2.2.7.jar		1.08 MB	Sep 28, 2022
opencga-app-2.2.6.jar		1.08 MB	Sep 21, 2022
opencga-app-2.2.5.jar		1.08 MB	Aug 02, 2022
opencga-app-2.2.4.jar		1.08 MB	Jul 22, 2022
opencga-app-2.2.3.jar		1.09 MB	Jul 07, 2022
opencga-app-2.2.1.jar		1.08 MB	May 05, 2022
opencga-app-2.2.0.jar		1.08 MB	Mar 25, 2022
2.0.x	opencga-app-2.0.5.jar		663.27 KB	Jul 21, 2021
opencga-app-2.0.4.jar		660.85 KB	Jun 03, 2021
opencga-app-2.0.3.jar		660.85 KB	May 27, 2021
opencga-app-2.0.2.jar		655.80 KB	Apr 21, 2021
opencga-app-2.0.1.jar		655.32 KB	Mar 09, 2021
opencga-app-2.0.0.jar		650.80 KB	Dec 31, 2020
opencga-app-2.0.0-SNAPHOST.jar		643.96 KB	Nov 26, 2020

Version

Vulnerabilities

Size

Updated

2.10.x

opencga-app-2.10.0.jar

1.23 MB

Jul 17, 2023

2.9.x

opencga-app-2.9.2.jar

1.23 MB

Jul 24, 2023

opencga-app-2.9.1.jar

1.23 MB

Jun 13, 2023

opencga-app-2.9.0.jar

1.23 MB

May 26, 2023

2.8.x

opencga-app-2.8.3.jar

1.23 MB

Aug 11, 2023

opencga-app-2.8.2.1.jar

1.23 MB

Jul 12, 2023

opencga-app-2.8.2.jar

1.23 MB

Jun 08, 2023

opencga-app-2.8.1.jar

1.23 MB

May 11, 2023

opencga-app-2.8.0.jar

1.23 MB

Apr 21, 2023

2.7.x

opencga-app-2.7.2.jar

1.21 MB

May 05, 2023

opencga-app-2.7.1.jar

1.21 MB

Mar 23, 2023

opencga-app-2.7.0.jar

1.21 MB

Feb 20, 2023

2.6.x

opencga-app-2.6.1.1.jar

1.21 MB

Feb 02, 2023

opencga-app-2.6.1.jar

1.21 MB

Jan 31, 2023

opencga-app-2.6.0.1.jar

1.21 MB

Jan 17, 2023

opencga-app-2.6.0.jar

1.21 MB

Jan 11, 2023

2.5.x

opencga-app-2.5.0.jar

1.19 MB

Nov 11, 2022

2.4.x

opencga-app-2.4.15.jar

1.20 MB

May 05, 2023

opencga-app-2.4.14.jar

1.20 MB

Mar 22, 2023

opencga-app-2.4.13.1.jar

1.20 MB

Feb 02, 2023

opencga-app-2.4.13.jar

1.20 MB

Jan 29, 2023

opencga-app-2.4.12.jar

1.20 MB

Dec 20, 2022

opencga-app-2.4.11.jar

1.19 MB

Nov 30, 2022

opencga-app-2.4.10.1.jar

1.19 MB

Dec 12, 2022

opencga-app-2.4.10.jar

1.19 MB

Oct 28, 2022

opencga-app-2.4.9.jar

1.19 MB

Oct 24, 2022

opencga-app-2.4.8.jar

1.19 MB

Oct 19, 2022

opencga-app-2.4.7.jar

1.19 MB

Oct 10, 2022

opencga-app-2.4.6.jar

1.19 MB

Oct 04, 2022

opencga-app-2.4.4.jar

1.17 MB

Sep 07, 2022

opencga-app-2.4.3.jar

1.17 MB

Aug 19, 2022

opencga-app-2.4.2.jar

1.15 MB

Aug 02, 2022

opencga-app-2.4.1.jar

1.14 MB

Jul 23, 2022

opencga-app-2.4.0.1.jar

1.15 MB

Jan 17, 2023

opencga-app-2.4.0.jar

1.15 MB

Jul 01, 2022

2.3.x

opencga-app-2.3.2.jar

1.12 MB

Jul 23, 2022

opencga-app-2.3.1.jar

1.13 MB

Jun 29, 2022

opencga-app-2.3.0.jar

1.13 MB

May 20, 2022

2.2.x

opencga-app-2.2.10.jar

1.08 MB

Nov 04, 2022

opencga-app-2.2.9.jar

1.08 MB

Oct 21, 2022

opencga-app-2.2.8.jar

1.08 MB

Sep 30, 2022

opencga-app-2.2.7.jar

1.08 MB

Sep 28, 2022

opencga-app-2.2.6.jar

1.08 MB

Sep 21, 2022

opencga-app-2.2.5.jar

1.08 MB

Aug 02, 2022

opencga-app-2.2.4.jar

1.08 MB

Jul 22, 2022

opencga-app-2.2.3.jar

1.09 MB

Jul 07, 2022

opencga-app-2.2.1.jar

1.08 MB

May 05, 2022

opencga-app-2.2.0.jar

1.08 MB

Mar 25, 2022

2.0.x

opencga-app-2.0.5.jar

663.27 KB

Jul 21, 2021

opencga-app-2.0.4.jar

660.85 KB

Jun 03, 2021

opencga-app-2.0.3.jar

660.85 KB

May 27, 2021

opencga-app-2.0.2.jar

655.80 KB

Apr 21, 2021

opencga-app-2.0.1.jar

655.32 KB

Mar 09, 2021

opencga-app-2.0.0.jar

650.80 KB

Dec 31, 2020

opencga-app-2.0.0-SNAPHOST.jar

643.96 KB

Nov 26, 2020

View Java Class Source Code in JAR file

Download JD-GUI to open JAR file and explore Java source code file (.class .java)
Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window opencga-app-2.8.3.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.

org.opencb.opencga.app.cli.admin.options

├─ org.opencb.opencga.app.cli.admin.options.MigrationCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.options.StorageCommandOptions.class - [JAR]

org.opencb.opencga.app.migrations.v2_0_5.catalog.java

├─ org.opencb.opencga.app.migrations.v2_0_5.catalog.java.initialiseGroups.class - [JAR]

org.opencb.opencga.app.cli.main.processors

├─ org.opencb.opencga.app.cli.main.processors.CommandProcessor.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_1.storage

├─ org.opencb.opencga.app.migrations.v2_2_1.storage.SampleIndexConfigurationAddMissingStatus.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_11.catalog

├─ org.opencb.opencga.app.migrations.v2_4_11.catalog.SignatureFittingsMigration.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddInternalLastModified.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToClinicalInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToCohortInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToFamilyInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToFileInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToIndividualInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToInterpretationInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToJobInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToProjectInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToSampleInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInternalLastModified.AddModificationDateToStudyInternal.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.AddMissingClinicalAudit.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.AddNameFieldInCohort.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.AddNewAllowedBiotype.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.AddNewFileInternalIndex_1850.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.AddSampleInternalVariant_1851.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.ChangeInterpretationMethods.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.ClinicalVariantEvidenceMigration.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.DeleteUnusedVariableSets.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.FixFamilyReferences.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.FixNonExistingMoIFromPanels.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.ImproveClinicalAnalysisQualityControl.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.ImproveFileQualityControl.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.ImproveIndividualQualityControl.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.ImproveVariableSetNamesAndDescriptions.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RemoveFileDocsFromCA.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RemoveParallelIndexes.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RenameFamilyQualityControlFields.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RenameFileQualityControlFields.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RenameIndividualQualityControlFields.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RenameInterpretationFindingStats.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.RenameSampleQualityControlFields.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addDefaultVariantCallerInterpretationStudyConfiguration.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addInterpretationStats.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRgaIndexToStudyInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.renameVariableSetFieldFromVariable.class - [JAR]

org.opencb.opencga.app.migrations

├─ org.opencb.opencga.app.migrations.StorageMigrationTool.class - [JAR]

org.opencb.opencga.app.cli.main.io

├─ org.opencb.opencga.app.cli.main.io.AbstractOutputWriter.class - [JAR]

├─ org.opencb.opencga.app.cli.main.io.JsonOutputWriter.class - [JAR]

├─ org.opencb.opencga.app.cli.main.io.Table.class - [JAR]

├─ org.opencb.opencga.app.cli.main.io.TextOutputWriter.class - [JAR]

├─ org.opencb.opencga.app.cli.main.io.VcfOutputWriter.class - [JAR]

├─ org.opencb.opencga.app.cli.main.io.WriterConfiguration.class - [JAR]

├─ org.opencb.opencga.app.cli.main.io.YamlOutputWriter.class - [JAR]

org.opencb.opencga.app.cli.main.executors

├─ org.opencb.opencga.app.cli.main.executors.AdminCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.AnalysisAlignmentCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.AnalysisClinicalCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.AnalysisVariantCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.CohortsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.DiseasePanelsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.ExecutorProvider.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.FamiliesCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.FilesCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.IndividualsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.JobsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.MetaCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.OpencgaCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.OperationsVariantStorageCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.ProjectsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.SamplesCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.StudiesCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.executors.UsersCommandExecutor.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDate.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToClinicalInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToCohortInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToFamilyInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToFileInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToIndividualInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToInterpretationInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToJobInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToProjectInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToSampleInternal.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.addRegistrationDate.AddRegistrationDateToStudyInternal.class - [JAR]

org.opencb.opencga.app.migrations.v2_3_1.catalog

├─ org.opencb.opencga.app.migrations.v2_3_1.catalog.MoveCellbaseFromProjectInternalToProjectBugFix.class - [JAR]

org.opencb.opencga.app.cli.main.utils

├─ org.opencb.opencga.app.cli.main.utils.CommandLineUtils.class - [JAR]

├─ org.opencb.opencga.app.cli.main.utils.JobsLog.class - [JAR]

├─ org.opencb.opencga.app.cli.main.utils.JobsTopManager.class - [JAR]

├─ org.opencb.opencga.app.cli.main.utils.LoginUtils.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_11

├─ org.opencb.opencga.app.migrations.v2_4_11.SynchronizeCatalogStorageStatuses.class - [JAR]

org.opencb.opencga.app.migrations.v2_8_0.catalog

├─ org.opencb.opencga.app.migrations.v2_8_0.catalog.CalculatePedigreeGraphMigration.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_4.catalog

├─ org.opencb.opencga.app.migrations.v2_4_4.catalog.AvoidCaseStatusIdNullMigration.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_4_4.catalog.RemoveBiotypeAllowedKeysMigration.class - [JAR]

org.opencb.opencga.app.cli.admin.executors.migration.storage

├─ org.opencb.opencga.app.cli.admin.executors.migration.storage.AbstractStorageMigrator.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.migration.storage.AddFilePathToStudyConfigurationMigration.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.migration.storage.NewStudyMetadata.class - [JAR]

org.opencb.opencga.app.cli.main.custom

├─ org.opencb.opencga.app.cli.main.custom.CustomCliOptionsParser.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomFilesCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomFilesCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomJobsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomJobsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomStudiesCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomStudiesCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomUsersCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.main.custom.CustomUsersCommandOptions.class - [JAR]

org.opencb.opencga.app.migrations.v2_1_0.storage

├─ org.opencb.opencga.app.migrations.v2_1_0.storage.AddCellbaseConfigurationToProject.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.storage.DefaultSampleIndexConfiguration.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.storage.NewClinicalSignificanceFields.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_0.catalog

├─ org.opencb.opencga.app.migrations.v2_4_0.catalog.AddClinicalStatusType_607.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_4_0.catalog.AddPrivateDueDate_803.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_4_0.catalog.IndexPanelSource.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_2.catalog

├─ org.opencb.opencga.app.migrations.v2_4_2.catalog.AddClinicalDiscussion.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_4_2.catalog.RecoverProbandSamplesInCases.class - [JAR]

org.opencb.opencga.app.migrations.v2_0_6.catalog

├─ org.opencb.opencga.app.migrations.v2_0_6.catalog.removeDeletedFileReferencesFromSample.class - [JAR]

org.opencb.opencga.app.migrations.v2_1_0.catalog.java

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.AddMissingIndexes.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.AddPanelsToInterpretations.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.CreateAuditIndexes.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.PanelLock.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.RemoveRCVersionsFromMigrationRuns.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.RenameDatastoreConfigurationToOptions.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.StudyClinicalConfigurationRelocation.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.java.VariantFileStatsRelocation.class - [JAR]

org.opencb.opencga.app.migrations.v2_0_3.catalog.java

├─ org.opencb.opencga.app.migrations.v2_0_3.catalog.java.Migration1.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_4.storage

├─ org.opencb.opencga.app.migrations.v2_4_4.storage.InvalidateVariantArchivesMigration.class - [JAR]

org.opencb.opencga.app.cli.main.shell

├─ org.opencb.opencga.app.cli.main.shell.Shell.class - [JAR]

org.opencb.opencga.app.cli.admin.executors.migration.v2_0_0

├─ org.opencb.opencga.app.cli.admin.executors.migration.v2_0_0.VariantStorage200MigrationTool.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_10.catalog

├─ org.opencb.opencga.app.migrations.v2_4_10.catalog.AddMissingEndDateOnFinishedJobs.class - [JAR]

org.opencb.opencga.app.cli.main.options

├─ org.opencb.opencga.app.cli.main.options.AdminCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.AnalysisAlignmentCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.AnalysisClinicalCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.AnalysisVariantCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.CohortsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.DiseasePanelsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.FamiliesCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.FilesCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.IndividualsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.JobsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.MetaCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.OperationsVariantStorageCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.ProjectsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.SamplesCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.StudiesCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.main.options.UsersCommandOptions.class - [JAR]

org.opencb.opencga.app.cli.internal.options

├─ org.opencb.opencga.app.cli.internal.options.AlignmentCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.ClinicalCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.CohortCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.DiseasePanelInternalCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.FamilyCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.FileCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.IndividualCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.JobCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.SampleCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.StudyCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.ToolsCommandOptions.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.options.VariantCommandOptions.class - [JAR]

org.opencb.opencga.app.migrations.v2_7_0.catalog

├─ org.opencb.opencga.app.migrations.v2_7_0.catalog.CancerRoleAndModeOfInheritanceMigration.class - [JAR]

org.opencb.opencga.app.cli.session

├─ org.opencb.opencga.app.cli.session.Session.class - [JAR]

├─ org.opencb.opencga.app.cli.session.SessionManager.class - [JAR]

org.opencb.opencga.app.cli

├─ org.opencb.opencga.app.cli.CliOptionsParser.class - [JAR]

├─ org.opencb.opencga.app.cli.CommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.GeneralCliOptions.class - [JAR]

org.opencb.opencga.app.migrations.v2_6_0.storage

├─ org.opencb.opencga.app.migrations.v2_6_0.storage.AddCellbaseDataRelease.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_1.catalog

├─ org.opencb.opencga.app.migrations.v2_2_1.catalog.AddMissingBiotypes.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_1.catalog.AddPanelGeneNameIndex.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_1.catalog.InitSharedProjectField.class - [JAR]

org.opencb.opencga.app.cli.utils

├─ org.opencb.opencga.app.cli.utils.CliCompletionMain.class - [JAR]

org.opencb.opencga.app.migrations.v2_3_0.catalog

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.AddLockedToInterpretation.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.AddPanelInternalField.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.AutoIncrementVersion.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.InitSampleIndexConfiguration.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.MoveCellbaseFromProjectInternalToProject.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.RenameDeletedCollections.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.RenameDeprecatedVariantStorageToolId.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_3_0.catalog.UpdateJWTSecretKey.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1796

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1796.AddCohortIdsInSample.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1795

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1795.AddFamilyIdsInIndividual.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.storage

├─ org.opencb.opencga.app.migrations.v2_2_0.storage.SynchronizeCatalogStorage.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.storage.UpdateSampleIndexStatus.class - [JAR]

org.opencb.opencga.app.migrations.v2_1_0.catalog.javascript

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.javascript.Migration1.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.javascript.Migration2.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.javascript.Migration3.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_1_0.catalog.javascript.Migration4.class - [JAR]

org.opencb.opencga.app.cli.admin.executors

├─ org.opencb.opencga.app.cli.admin.executors.AdminCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.AuditCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.CatalogCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.MetaCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.MigrationCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.PanelCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.ServerCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.StorageCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.executors.UsersCommandExecutor.class - [JAR]

org.opencb.opencga.app.migrations.v2_4_3.catalog

├─ org.opencb.opencga.app.migrations.v2_4_3.catalog.MigrateToClinicalAcmg.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_4_3.catalog.ShortenIndexedFieldVariables.class - [JAR]

org.opencb.opencga.app.migrations.v2_3_0.storage

├─ org.opencb.opencga.app.migrations.v2_3_0.storage.AddMissingColumnsToPhoenix.class - [JAR]

org.opencb.opencga.app.cli.main

├─ org.opencb.opencga.app.cli.main.OpenCgaCompleter.class - [JAR]

├─ org.opencb.opencga.app.cli.main.OpenCgaCompleterImpl.class - [JAR]

├─ org.opencb.opencga.app.cli.main.OpencgaCliOptionsParser.class - [JAR]

├─ org.opencb.opencga.app.cli.main.OpencgaMain.class - [JAR]

org.opencb.opencga.app.cli.internal

├─ org.opencb.opencga.app.cli.internal.InternalCliOptionsParser.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.InternalMain.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteClinicalStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteCohortStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteFamilyStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteFileStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteIndividualStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteInterpretationStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteJobStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompletePanelStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteProjectStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteSampleStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteStatusDataModelUtils.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteStudyStatusDataModel.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issue_1849.CompleteUserStatusDataModel.class - [JAR]

org.opencb.opencga.app.cli.internal.executors

├─ org.opencb.opencga.app.cli.internal.executors.AlignmentCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.ClinicalCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.CohortCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.DiseasePanelInternalCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.FamilyCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.FileCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.IndividualCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.InternalCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.JobCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.SampleCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.StudyCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.ToolsCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.VariantInternalCommandExecutor.class - [JAR]

├─ org.opencb.opencga.app.cli.internal.executors.VariantQueryCommandUtils.class - [JAR]

org.opencb.opencga.app.cli.admin

├─ org.opencb.opencga.app.cli.admin.AdminCliOptionsParser.class - [JAR]

├─ org.opencb.opencga.app.cli.admin.AdminMain.class - [JAR]

org.opencb.opencga.app.migrations.v2_2_0.catalog.issues_1853_1855

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issues_1853_1855.IndividualOntologyTermMigration.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issues_1853_1855.NewStudyDataModelFields.class - [JAR]

├─ org.opencb.opencga.app.migrations.v2_2_0.catalog.issues_1853_1855.SampleProcessingAndCollectionChanges.class - [JAR]

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