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pt.uminho.ceb.biosystems.mcslibrary : mcslibrary

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Jul 09, 2018
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mcslibrary · Java implementation of the MCSEnumerator approach for MEWorkbench

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1.1.x

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  1. Download JD-GUI to open JAR file and explore Java source code file (.class .java)
  2. Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window mcslibrary-1.1.0.jar file.
    Once you open a JAR file, all the java classes in the JAR file will be displayed.

pt.uminho.ceb.biosystems.mcslibrary.enumeration

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.AbstractEnumerationResult.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.AbstractEnumerationSolver.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.EnumerationProblem.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.Solution.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.AbstractMetabolicNetwork.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.MetabolicNetworkManipulation.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.Metabolite.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.Reaction.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.ReactionGroup.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.SimulationResult.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic.compression

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.compression.NullspaceNetworkCompressor.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic.fba

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.fba.CPLEXFluxBalanceAnalysis.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.fba.CPLEXParsimoniousFluxBalanceAnalysis.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.fba.FluxBalanceAnalysisResult.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic.implementation

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.implementation.CompressedMetabolicNetwork.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.implementation.DefaultMetabolicNetwork.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.SimulationMatrix.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.SolutionFluxStepGrid.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution.analysis

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.AnalysisFileManager.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.AnalysisUtilities.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.RobustnessCriteria.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.SimulationMap.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.SolutionAnalysisPipeline.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.SolutionAnalysisResult.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.SolutionFilter.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.SolutionFilterPipeline.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.TurnoverDependencyChecker.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.TurnoverScore.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic.fva

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.fva.CPLEXFluxVariabilityAnalysis.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.fva.FluxVariabilityAnalysisResult.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution.scoring

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.SolutionScorer.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.enumeration.implementation

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.implementation.CPLEXEnumerationFilter.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.implementation.CPLEXEnumerationSolver.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.implementation.CPLEXFlexibleFVA.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.implementation.CompressedEnumerationResults.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.enumeration.implementation.DefaultEnumerationResult.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic.constraints

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.constraints.ConstraintType.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.constraints.FluxBound.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.constraints.ReactionConstraint.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.constraints.YieldConstraint.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.SolutionUtilities.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.utilities

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.AlgorithmType.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.BarChart.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.BashQueueGenerator.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.ChartUtilities.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.MCSPipeline.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.MainClass.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.MapUtils.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.Pair.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.RegexUtils.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.ScatterPlot.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.SteadyStateModelReader.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.utilities.Utilities.class - [JAR]

pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.pathwayanalysis

├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.pathwayanalysis.AbstractPathwayAnalysisConfiguration.class - [JAR]

├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.pathwayanalysis.McslibraryGenericConfiguration.class - [JAR]

├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.pathwayanalysis.MinimalCutSetEnumerationAlgorithm.class - [JAR]

├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.pathwayanalysis.PathwayAnalysisProperties.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.datastructures.dataframe.components

├─ pt.uminho.ceb.biosystems.mcslibrary.datastructures.dataframe.components.Series.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution.converter

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.converter.ConvertReactionToGenesKos.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.converter.GKtoRKConverter.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.converter.RKtoGKConverter.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.datastructures

├─ pt.uminho.ceb.biosystems.mcslibrary.datastructures.AbstractTree.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.datastructures.SimulationContainer.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.metabolic.compression.alg

├─ pt.uminho.ceb.biosystems.mcslibrary.metabolic.compression.alg.MatrixTools.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.components

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.components.EnvelopeProperties.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.components.EnvelopeResult.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.components.PivotResult.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.components.VariabilityAnalysis.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.analysis.simulation.components.VariabilityAnalysisResult.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.datastructures.dataframe

├─ pt.uminho.ceb.biosystems.mcslibrary.datastructures.dataframe.DataFrame.class - [JAR]

pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems.BPCYScoreItem.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems.CarbonYieldScoreItem.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems.IScoreItem.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems.PFBAFluxValueItem.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems.RobustnessScoreItem.class - [JAR]

├─ pt.uminho.ceb.biosystems.mcslibrary.solution.scoring.scoreitems.SolutionSizeItem.class - [JAR]

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