View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window mew-core-1.1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
pt.uminho.ceb.biosystems.mew.core.analysis.solutionanalysis.methods
├─ pt.uminho.ceb.biosystems.mew.core.analysis.solutionanalysis.methods.AbstractSolutionAnalysisMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.analysis.solutionanalysis.methods.GenericRobustnessAnalysis.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.randomsearch.strategy
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.randomsearch.strategy.JecoliRANDOMRKCSOM.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.sampling.implementation
├─ pt.uminho.ceb.biosystems.mew.core.sampling.implementation.ACHRSampling.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.GetInputData.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.LA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.SystemSimplification.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.ModelStructureDouble.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.ModelStructureLong.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.ReducedModelDouble.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.ReducedModelLong.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.exceptions
├─ pt.uminho.ceb.biosystems.mew.core.model.exceptions.InvalidDynamicModelException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.exceptions.InvalidSteadyStateModelException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.exceptions.NonExistentIdException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.exceptions.ReactionConstraintNotPresentException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.gou
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.gou.GOUStrategyReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.controlcenter
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.controlcenter.AbstractMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.controlcenter.AbstractOptimizationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.controlcenter.AbstractStrainOptimizationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.controlcenter.OptimizationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.controlcenter.StrainOptimizationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.GenericConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.GenericOptimizationProperties.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.IGeneSteadyStateConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.IGenericConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.ISteadyStateConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.ISwapsSteadyStateConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.configuration.InvalidConfigurationException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.rkrs
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.rkrs.RKRSStrategyReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.Flux.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.FluxSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.LA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.MFANullSpace.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.MFANullSpaceSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.MeasuredFlux.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.NullSpaceDefaults.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.nullspace.NullSpaceMethod.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset.GKSolutionSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset.GOUSolutionSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset.RKRSSolutionSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset.RKSolutionSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset.ROUSolutionSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solutionset.ResultSetFactory.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.GKDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.GOUDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.ISteadyStateDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.RKDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.RKRSDualSetRepresentationDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.ROUDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.decoder.ReactionSwapData.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.RatioSolver.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.SolveContraint.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.TDPS.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.TDPS2.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.TDPS2_backup.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.TDPS3.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.TDPS_FBA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.tdps.TDPS_LMOMA.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.archivetrimming
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.archivetrimming.SelectionValueTrimmer.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.rk
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.rk.RKStrategyReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution.GKSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution.GOUSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution.RKRSSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution.RKSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution.ROUSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.solution.SolutionFactory.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.properties
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.properties.MFAProperties.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.properties.MFASystemType.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.properties.MFASystemTypeDetermination.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.AbstractObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.IObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.InvalidFieldException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.InvalidObjectiveFunctionConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ObjectiveFunctionParameterType.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ObjectiveFunctionsFactory.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter.IJecoliOptimizationStrategyConverter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter.JecoliGKConverter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter.JecoliGOUConverter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter.JecoliRKConverter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter.JecoliRKRSConverter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.components.strategyconverter.JecoliROUConverter.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.components
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.AbstractOverrideSteadyStateModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.AbstractSimulationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.AbstractSimulationSteadyStateControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.AddReactionsContainerBuilder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.AddReactionsSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.AddReactionsSimulationResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.FluxValueMap.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.GeneChangesList.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.GeneticConditions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.IConvexSteadyStateSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.IOverrideReactionBounds.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.ISteadyStateSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.MetaboliteValueMap.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.OverrideSteadyStateModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.ReactionChangesList.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.ReferenceFluxDistributionSource.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.RegistMethodException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.SimulationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.SimulationProperties.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.SimulationSteadyStateControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.SteadyStateMultiSimulationResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.SteadyStateSimulationResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.components.UnderOverSingleReference.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.dspp
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.dspp.DSPP_BPCYObjectiveFunction.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.pbil
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.pbil.JecoliPBILCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.pbil.JecoliPBILCSOMConfig.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.exceptions
├─ pt.uminho.ceb.biosystems.mew.core.simulation.exceptions.AutomaticOverUnderSimulationException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.exceptions.AutomaticSimulationException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.exceptions.NoSuchSolverTypeException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.exceptions.SimulationMethodTypeNotDefinedException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.exceptions.UnsupportedPropertyException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.robustness
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.robustness.MFARobustnessAnalysis.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.robustness.MFARobustnessResult.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.exceptions
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.exceptions.ClassicAlgebraInverseException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.exceptions.ErrorLog.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.exceptions.InvalidExpressionException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.JecoliSPEAIICSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.JecoliSPEAIICSOMConfig.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.exceptions
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.exceptions.OptimizationAlgorithmNotDefinedException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.exceptions.StrategyNotDefinedException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.exceptions.UnregisteredAlgorithmStrategyException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.MaxTurnOver_TRNO.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.MiMBl.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.MiMBlFIXED.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.MiMBl_MILP.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.MiMBl_NormalizeSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.TurnOverProperties.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.turnover.TurnOver_Text.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.JecoliEACSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.JecoliEACSOMConfig.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.converters
├─ pt.uminho.ceb.biosystems.mew.core.model.converters.ContainerConverter.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.fva
├─ pt.uminho.ceb.biosystems.mew.core.simulation.fva.FBAFluxVariabilityAnalysis.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.fva.FBAFluxVariabilityAnalysisNew.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.fva.IFluxVariabilityAnalysis.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel.gpr
├─ pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel.gpr.ISteadyStateGeneReactionModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel.gpr.SteadyStateGeneReactionModel.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.AbstractStrainOptimizationAlgorithm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.IAlgorithm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.IStrainOptimizationAlgorithm.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.FluxRatios.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.FluxRatiosConstants.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.FluxRatiosTokenManager.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.ParseException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.SimpleCharStream.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.Token.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.TokenMgrError.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.fluxratios.grammar.ValidateFluxRatios.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.components.enums
├─ pt.uminho.ceb.biosystems.mew.core.model.components.enums.MatrixEnum.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.enums.ModelType.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.enums.ReactionType.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.AbstractSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.AbstractStrainOptimizationResultSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.IStrainOptimizationReader.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.IStrainOptimizationResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.IStrainOptimizationResultSet.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.IStrainOptimizationWriter.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.AbstractStrainOptimizationSolutionReader.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.SolutionReaderFactory.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.AbstractObjTerm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.AbstractSSBasicSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.AbstractSSReferenceSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.AbstractTurnoverFormulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.AbstractTurnoverFormulationFIXED.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.L1VarTerm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.OverUnderException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.QuadraticTerm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.VarTerm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.abstractions.WrongFormulationException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.analysis.solutionanalysis
├─ pt.uminho.ceb.biosystems.mew.core.analysis.solutionanalysis.ISolutionAnalysis.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ratioconstraints
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ratioconstraints.FluxRatioConstraint.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ratioconstraints.FluxRatioConstraintList.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ratioconstraints.FluxRatioTokens.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ratioconstraints.MathmlRatiosParser.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ratioconstraints.RatioConstraintComparator.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.formulations.exceptions
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.exceptions.ManagerExceptionUtils.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.exceptions.MandatoryPropertyException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.exceptions.NoConstructorMethodException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.exceptions.PropertyCastException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.exceptions.UnregistaredMethodException.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.utils
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.utils.AlgebraUtils.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.utils.LinkedMap.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.utils.MathUtils.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.utils.ThreeTuple.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.strategy
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.strategy.JecoliEAGKCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.strategy.JecoliEAGOUCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.strategy.JecoliEARKCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.strategy.JecoliEARKRSCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.ea.strategy.JecoliEAROUCSOM.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.balance
├─ pt.uminho.ceb.biosystems.mew.core.balance.AbstractIndexedMatrix.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.BalanceChecker.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.ColtSolveSystems.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.IndexedMatrixBuilder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.IndexedSparseColtMatrix.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.Mmatrixbuilder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.Smatrixbuilder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.balance.SolveSystems.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simplification.model
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.EquivalentFluxes.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.FVAZeroValueFluxes.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.ListEquivalentReactions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.ListProportionalFluxesDouble.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.ListProportionalFluxesLong.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.ModelSimplificationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.StructuralAnalysisFunctions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.ZeroValueFluxes.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.sampling.abstraction
├─ pt.uminho.ceb.biosystems.mew.core.sampling.abstraction.Bias.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.sampling.abstraction.CreateWarmupPoints.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.sampling.abstraction.ISampling.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.sampling.abstraction.Sampling.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.sampling.abstraction.SamplingResult.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.criticality.experimental
├─ pt.uminho.ceb.biosystems.mew.core.criticality.experimental.IExperimentalGeneEssentiality.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.experimental.KEIO.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.experimental.ManualEssencials.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.experimental.OGEE.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.strategy
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.strategy.JecoliSPEA2GKCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.strategy.JecoliSPEA2GOUCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.strategy.JecoliSPEA2RKCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.strategy.JecoliSPEA2RKRSCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.spea2.strategy.JecoliSPEA2ROUCSOM.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel
├─ pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel.IModelInformation.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel.ISteadyStateModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.steadystatemodel.SteadyStateModel.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.EstimateVMs.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.IMFASimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.IMultipleSolutionsMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.MFAApproaches.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.MFAMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.MFAWithSolvers.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.components
├─ pt.uminho.ceb.biosystems.mew.core.model.components.AbstractModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.ColtSparseStoichiometricMatrix.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.Compartment.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.EnvironmentalConditions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.Gene.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.GeneReactionRule.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.IModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.IStoichiometricMatrix.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.Metabolite.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.Pathway.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.Protein.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.ProteinReactionRule.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.Reaction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.ReactionConstraint.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.ExpMeasuredFluxes.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.MFAConstraintSource.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.MFAControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.MFAOverrideModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.MFARatiosOverrideModel.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.BPCYObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.CYIELDObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.FVAObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.FVASenseMinPSYieldObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.FVASenseObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.FluxValueNumberReactionsObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.FluxValueObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.MinimizeAlternativesObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.NumKnockoutsObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.PercentMaxTheoreticalCarbonYieldObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.ProductYieldObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.SumOfFluxesObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.TurnoverObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.WeightedBPCYObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.WeightedBPObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.WeightedBiomassYIELDObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.WeightedYIELDObjectiveFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.objectivefunctions.ofs.YieldMinimumBiomassObjectiveFunction.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.formulations
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.DSPP_LMOMA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.FBA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.LMOMA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.LPVariabilityProblem.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.MOMA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.MinMaxRacio.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.NormLMoma.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.PFBA.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.formulations.ROOM.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.strategy
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.strategy.JecoliSAGKCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.strategy.JecoliSAGOUCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.strategy.JecoliSARKCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.strategy.JecoliSARKRSCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.strategy.JecoliSAROUSCOM.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.model.components.kineticlaw
├─ pt.uminho.ceb.biosystems.mew.core.model.components.kineticlaw.KineticLaw.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.kineticlaw.LocalParameters.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.model.components.kineticlaw.Parameter.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.gk
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.gk.GKStrategyReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.simplifiers
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.simplifiers.GKSolutionSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.simplifiers.GOUSolutionSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.simplifiers.RKRSSolutionSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.simplifiers.RKSolutionSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.simplifiers.ROUSolutionSimplifier.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.randomsearch
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.randomsearch.JecoliRANDOMCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.randomsearch.JecoliRANDOMCSOMConfig.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.linearprogramming
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.linearprogramming.MFALP.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.linearprogramming.MFAParsimonious.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.linearprogramming.MFAQP.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.IJecoliConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.IJecoliStrainOptimizationAlgorithm.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.JecoliCSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.JecoliGenericConfiguration.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.JecoliOptimizationProperties.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.variability
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.variability.MFAFluxVariabilityAnalysis.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.variability.MFAFvaResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.variability.MFATightBounds.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.variability.MFATightBoundsResult.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.mains
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.mains.TestNullSpace.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.evaluationfunction
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.evaluationfunction.IOptimizationEvaluationFunction.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.evaluationfunction.StrainOptimizationEvaluationFunction.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.rou
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.io.rou.ROUStrategyReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.factory
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.factory.AlgorithmNotInFactoryException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.factory.IOptimizationAlgorithmFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.algorithm.factory.OptimizationAlgorithmMainFactory.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.utils
├─ pt.uminho.ceb.biosystems.mew.core.utils.BinaryFluxValueMap.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.Constants.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.Debugger.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.DistanceMetric.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.Evaluator.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.FluxDistributionUtils.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.IOnOffSwitch.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.ModelInteractionUtils.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.OrderCompoundFields.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.OrderReactionFields.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.utils.SmartProperties.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.criticality
├─ pt.uminho.ceb.biosystems.mew.core.criticality.AbstractOptimizationTargetsStrategy.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.CriticalGenes.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.CriticalReactions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.DeadEnds.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.Flag.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.GKOptimizationTargetsStrategy.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.IOptimizationTargetsStrategy.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.OptimizationTargetsControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.RKOptimizationTargetsStrategy.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.criticality.TargetIDStrategy.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.JecoliSACSOM.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.strainoptimizationalgorithms.jecoli.sa.JecoliSACSOMConfig.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simplification.solutions
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.AbstractGeneticConditionsSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.AbstractPersistenceSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.AbstractSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.GenesSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.GeneticConditionSimplifiedResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.IGeneticConditionsSimplifiedResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.ISimplifierGeneticConditions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.ReactionsSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.ReactionsSwapsSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.solutions.SimplifierOptions.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.IStrainOptimizationResultsSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.StrainOptimizationResultsSimplifier.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.strainoptimization.optimizationresult.simplification.StrainOptimizationSimplificationFactory.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces.IModelStructure.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces.IModelStructureDouble.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces.IModelStructureLong.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces.IReducedModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces.IReducedModelDouble.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simplification.model.nullspace.structure.interfaces.IReducedModelLong.class - [JAR]
pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.EchelonTransformation.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFAAlgebra.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFAAlgebraStoichConversions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFAClassicAlgebra.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFAClassicAlgebraResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFADetermined.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFALeastSquares.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.core.simulation.mfa.methods.algebra.MFAWeightedLeastSquares.class - [JAR]
