View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window mew-regulatorycore-1.1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.formulations
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.formulations.NetworkMemory.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.methods.doublelayer.abstractions
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.methods.doublelayer.abstractions.AbstractTwoStepIntegratedSimulation.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.status
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.status.StatusHandlerCriticalgenes.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.objectivefunctions
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.objectivefunctions.NumKnockoutsObjectiveFunctionRegulatory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.objectivefunctions.YieldMinimumBiomassObjectiveFunctionRegulatory.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container.interfaces
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.interfaces.IContainerIntegratedMRBuilder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.interfaces.IContainerRegulatoryBuilder.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.results
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.results.RegulatorySolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.results.RegulatorySolutionSet.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.results
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.results.IRegulatoryNetworkSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.formulations.methods
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.formulations.methods.BRNV.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.controlcenters
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.controlcenters.AbstractRegulatoryNetworkSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.controlcenters.RegulatoryNetworkSimulationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.decoders
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.decoders.RegulatoryGenesKnockoutDecoder.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.criticalgenes
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.criticalgenes.CriticalRegulatoryGenes.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.criticalgenes.CriticalRegulatoryGenesResults.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.results.resultcontainers
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.results.resultcontainers.AbstractRegulatoryNetworkSimulationResults.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.results.resultcontainers.BRNSimulationResults.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.networkmodel
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.networkmodel.BooleanRegulatoryNetworkModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.networkmodel.IRegulatoryModel.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.components
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.components.GeneregulatorychangesList.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.components.IntegratedSimulationMethods.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.components.RegulatoryGeneticConditions.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.components.RegulatorySimulationProperties.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.methods.doublelayer
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.methods.doublelayer.IntegratedBRN.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.controlcenter
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.controlcenter.RegulatoryGeneKnockoutOptimizationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.AbstractRegulatoryNetworkModelReader.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.CSVRegulatoryNetworkModelReader.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.ExcelRegulatoryNetworkModelReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.auxiliar
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.auxiliar.AuxiliarRegModelReaderExcel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.auxiliar.RegModelAuxiliarStaticMethods.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.auxiliar.RegModelInfoContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.auxiliar.RegModelPreprocessingChecker.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.regulatorynetwork.auxiliar.RegModelTempinformationContainer.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.controlcenter
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.controlcenter.IntegratedMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.controlcenter.IntegratedSimulationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.components
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.components.IRegulatoryNetworkSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.components.RegulatoryNetworkSimulationMethods.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.components.RegulatoryNetworkSimulationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.components.RegulatoryNetworkSimulationProperties.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.integratedmodel
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.integratedmodel.FlatFileIntegratedModelReader.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.readers.integratedmodel.SBMLIntegratedModelReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.optflux.readers
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.io.optflux.readers.AbstractRegulatoryModelReader.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.converters
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.converters.ConvertToIntegratedModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.converters.ConvertToRegulatoryNetModel.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.components
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.components.RegulatoryRule.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.components.RegulatoryVariable.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.configuration
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.configuration.RegulatoryGenericConfiguration.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.IntegratedMRContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.RegulatoryContainer.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.results
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.results.IntegratedSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.controlcenter.subcomponents
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.controlcenter.subcomponents.OptimizationDefinitionsContainer.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.container.components
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.components.RegulatoryGeneCI.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.components.RegulatoryRuleCI.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.components.UnsuportedVariableException.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.container.components.VariableCI.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.overunderexpression.decoder
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.overunderexpression.decoder.RegulatoryGeneSteadyStateUnderOverExp2Decoder.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.formulations.abstractions
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.simulation.formulations.abstractions.AbstractRegulatoryNetworkSimulation.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.components
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.components.VariablesContainer.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.model
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.model.IIntegratedStedystateModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.model.IntegratedSteadyStateModel.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.simplification
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.simplification.RegulatorySolutionSimplification.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.simplification.RegulatorySolutionSimplificationResult.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.methods
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.integratedmodel.simulation.methods.SRFBA.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.evaluationfunctions
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.optimization.components.evaluationfunctions.RegulatoryGeneKnockoutEvaluationFunction.class - [JAR]
pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.mapper.regnetworkmodel
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.mapper.regnetworkmodel.IRegulatoryDecoder.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.mapper.regnetworkmodel.IRegulatoryModelMapper.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.mapper.regnetworkmodel.IRegulatoryOverrideModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.mapper.regnetworkmodel.OverrideRegulatoryModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.mew.regulatorycore.genenetworkmodel.mapper.regnetworkmodel.RegulatoryModelMapper.class - [JAR]
