View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window mew-regulatory-simulation-1.1.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.synchronous.updaters
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.synchronous.updaters.SynchronousUpdaterWithKnockouts.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.srfba
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.srfba.SRFBA.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.srfba.SRFBARegulatoryStateMemory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.srfba.SRFBASimulationResults.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.GeneKnockoutsIntegratedSimulationthread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.metabolic
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.metabolic.MultiThreadMetabolicSimulationControlCenterManyByThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.metabolic.MultiThreadMetabolicSimulationControlCenterOneByThread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.IntegratedReducedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.IntegratedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.ListIntegratedCompleteSolutions.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.ListIntegratedReducedSolutions.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.MultipleExtendedIntegratedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.MultipleIntegratedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.integrated.ReducedGeneIntegratedSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.integrated
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.integrated.IntegratedMultiGenesReusableSimulationThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.integrated.IntegratedSimulationCCPerGeneSetThread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.AbstractMultipleSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.AbstractSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.SimulationFlag.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.results
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.results.GenericRegulatorySimulationResults.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.results.IntegratedSimulationMethodResult.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.results.TypeIntegratedSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components.AbstractThreadSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components.ExecutionProcessKiller.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components.IExecutionKiller.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components.IntegratedSimulationOptionsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components.RFBASimulationOptionsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.components.SimulationOptionsContainer.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.DynamicRFBA.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.Dynamic
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.Dynamic.DynamicRegulatoryGeneticConditions.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.synchronous
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.synchronous.SequencialSimulationWithMemory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.synchronous.SynchronousSimulationWithMemory.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.containers
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.containers.AbstractRegulatoryNetworkSimulationResults.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.containers.AsynchronousSimulationResults.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.containers.BRNSimulationResults.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.containers.RegulatoryResultsContainerType.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.containers.SynchronousSimulationResults.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.PropertiesOfMethodRequirementException.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.features.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.features.components.StatusHandlerCriticalgenes.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.analysis.regulatoryrules
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.analysis.regulatoryrules.OrderRuleDependencies.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.analysis.regulatoryrules.RegulatoryRulesAnalyserControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.analysis.regulatoryrules.RegulatoryRulesAnalyserTask.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.analysis.regulatoryrules.RegulatoryRulesAnalyserThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.analysis.regulatoryrules.RulesAnalyserReporterContainer.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic.ListMetabolicSolutions.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic.MetabolicExtendedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic.MetabolicReducedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic.MultipleMetabolicReducedSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic.MultipleMetabolicSimulationResultsContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.components.metabolic.ReducedGeneSteadyStateSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.features
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.features.CriticalRegulatoryGenes.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.features.CriticalRegulatoryGenesResults.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.tasks
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.tasks.SingleIntegratedSimulationTask.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.tasks.SingleMetabolicSimulationTask.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.tasks.SingleMetabolicSimulationTaskReducedSol.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.common
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.common.StaticFieldsDescriptor.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.asynchronous
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.asynchronous.AsynchronousSimulator.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.asynchronous.IMultipleSuccessorSimulationMemoryFeature.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.asynchronous.MultipleSuccessorSimulationWithMemory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.asynchronous.QueuedState.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.LogicalModelSimulationStateMemory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.logicalmodelextensions.SimulationWithMemory.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.INetworkSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.IRegulatoryNetworkSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.InvalidRegulatoryModelException.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.RegulatoryNetworkGenesInfoContainer.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.RegulatoryNetworkSimulationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.RegulatoryNetworkSimulationProperties.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.components.RegulatorySimulationMethod.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.tasks
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.tasks.GeneKnockoutsIntegratedSimulationTask.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.metabolic
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.metabolic.MetabolicMultiGenesReusableSimulationThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.metabolic.MetabolicSimulationCCPerGeneSetThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.threads.metabolic.SingleMetabolicSimulationThread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.AbstractTwoStepIntegratedSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.OptfluxIntegratedSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.aux
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.aux.MapOfResults.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.factory
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.factory.IntegratedAbstractSimulationMethodsFactory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.factory.IntegratedMethodsFactory.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.results
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.results.RFBASimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.integrated
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.integrated.AbstractMultiThreadIntegratedSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.integrated.MultiThreadIntegratedSimulationControlCenterManyByThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.controlcenters.integrated.MultiThreadIntegratedSimulationControlCenterOneByThread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedLayerSimulation
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedLayerSimulation.AbstractIntegratedNetworkSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedLayerSimulation.ConditionalIntegratedNetworkSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedLayerSimulation.ConditionalIntegratedSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedLayerSimulation.IntegratedSimulationWithCoupledAsynchronousRegulatory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.doublelayer.IntegratedLayerSimulation.PreValidationIntegratedNetworkSimulation.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.methodscontrolcenter
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.methodscontrolcenter.DynamicRFBAControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.methodscontrolcenter.GeminiSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.methodscontrolcenter.IntegratedSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.methodscontrolcenter.PromSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.methodscontrolcenter.SRFBAControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.EmptyPropertyValueException.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.GeneregulatorychangesList.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.IIntegratedSteadyStateSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.IntegratedSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.RegulatoryGeneticConditions.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.RegulatorySimulationProperties.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.components.VariablesStateContainer.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.controlcenter
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.controlcenter.SingleThreadIntegratedSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.controlcenter.SingleThreadMetabolicSimulationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.components.ISimulationThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.components.IntegratedSimulationThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.components.MetabolicSimulationThread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.executors
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.executors.MultiThreadSimulationExecutorCallableTasks.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.executors.MultiThreadSimulationExecutorRunneableSim.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.executors.StaticMultiThreadSimulationExecutorCallableTasks.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.controlcenters
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.controlcenters.AbstractRegulatoryNetworkSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.controlcenters.RegulatoryNetworkSimulationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.tasks.metabolic
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.multithread.tasks.metabolic.MetabolicSimulationCCPerGeneSetTask.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.AbstractRegulatoryNetworkSimulationMethod.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.BDDAsynchronousStateSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.BDDSequencialStateSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.BDDSynchronousStateSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.OptFluxSynchronousBooleanSimulation.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.components.Attractor.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.components.INetworkMemory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.components.OptFluxRegulatoryNetworkMemory.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.abstractcontrolcenter
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.abstractcontrolcenter.AbstractIntegratedSimulationControlCenter.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.controlcenter.abstractcontrolcenter.TwoStepIntegratedSimulationControlCenter.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.gemini
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.gemini.Gemini.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.gemini.GeminiMetricType.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.gemini.GeminiSimulationResults.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.gemini.TypePhenotypeKnockout.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.prom
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.prom.Prom.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.prom.PromRegulatoryGeneticConditions.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.prom.PromSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.coupled
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.coupled.AsynchronousSimulatorWithCoupledMetabolicSimulation.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.methods.coupled.BDDAsynchronousStateWithCoupleMetabolicSimulation.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.regulatorynetwork.results.IRegulatoryModelSimulationResult.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.thread
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.thread.SingleIntegratedSimulationThread.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.executioncc.singlethread.thread.SingleMetabolicSimulationThread.class - [JAR]
pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.BooleanRegulatoryModelSolver.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.DynamicRFBAProcess.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.OptimizeRegulatoryModel.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.RFBAOptimizationSolution.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.RFBARegulatoryStateMemory.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.RFBASolutionException.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.RFBASolutionType.class - [JAR]
├─ pt.uminho.ceb.biosystems.reg4optfluxsimulation.integratednetwork.methods.rfba.components.UnknownRegulatoryModelComponentException.class - [JAR]
