jar

uk.ac.ebi.ena.sequence : embl-api-validator

Maven & Gradle

Aug 20, 2018
10 stars

sequencetools · flat file parser and validator

Table Of Contents

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1.1.x

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    Once you open a JAR file, all the java classes in the JAR file will be displayed.

org.apache.commons.dbutils.handlers

├─ org.apache.commons.dbutils.handlers.AbstractKeyedHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.AbstractListHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.ArrayHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.ArrayListHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.BeanHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.BeanListHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.BeanMapHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.ColumnListHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.KeyedHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.MapHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.MapListHandler.class - [JAR]

├─ org.apache.commons.dbutils.handlers.ScalarHandler.class - [JAR]

org.apache.commons.lang3.builder

├─ org.apache.commons.lang3.builder.Builder.class - [JAR]

├─ org.apache.commons.lang3.builder.CompareToBuilder.class - [JAR]

├─ org.apache.commons.lang3.builder.EqualsBuilder.class - [JAR]

├─ org.apache.commons.lang3.builder.HashCodeBuilder.class - [JAR]

├─ org.apache.commons.lang3.builder.IDKey.class - [JAR]

├─ org.apache.commons.lang3.builder.ReflectionToStringBuilder.class - [JAR]

├─ org.apache.commons.lang3.builder.StandardToStringStyle.class - [JAR]

├─ org.apache.commons.lang3.builder.ToStringBuilder.class - [JAR]

├─ org.apache.commons.lang3.builder.ToStringStyle.class - [JAR]

org.apache.log4j.lf5.viewer.categoryexplorer

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryAbstractCellEditor.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryElement.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryExplorerLogRecordFilter.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryExplorerModel.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryExplorerTree.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryImmediateEditor.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryNode.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryNodeEditor.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryNodeEditorRenderer.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryNodeRenderer.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.CategoryPath.class - [JAR]

├─ org.apache.log4j.lf5.viewer.categoryexplorer.TreeModelAdapter.class - [JAR]

uk.ac.ebi.ena.taxonomy.util

├─ uk.ac.ebi.ena.taxonomy.util.JsonUtils.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.util.TaxonUtils.class - [JAR]

uk.ac.ebi.embl.api.validation.check.entries

├─ uk.ac.ebi.embl.api.validation.check.entries.EntriesValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entries.Entry_NameCheck.class - [JAR]

org.apache.commons.collections.list

├─ org.apache.commons.collections.list.AbstractLinkedList.class - [JAR]

├─ org.apache.commons.collections.list.AbstractListDecorator.class - [JAR]

├─ org.apache.commons.collections.list.AbstractSerializableListDecorator.class - [JAR]

├─ org.apache.commons.collections.list.CursorableLinkedList.class - [JAR]

├─ org.apache.commons.collections.list.FixedSizeList.class - [JAR]

├─ org.apache.commons.collections.list.GrowthList.class - [JAR]

├─ org.apache.commons.collections.list.LazyList.class - [JAR]

├─ org.apache.commons.collections.list.NodeCachingLinkedList.class - [JAR]

├─ org.apache.commons.collections.list.PredicatedList.class - [JAR]

├─ org.apache.commons.collections.list.SetUniqueList.class - [JAR]

├─ org.apache.commons.collections.list.SynchronizedList.class - [JAR]

├─ org.apache.commons.collections.list.TransformedList.class - [JAR]

├─ org.apache.commons.collections.list.TreeList.class - [JAR]

├─ org.apache.commons.collections.list.TypedList.class - [JAR]

├─ org.apache.commons.collections.list.UnmodifiableList.class - [JAR]

com.beust.jcommander.internal

├─ com.beust.jcommander.internal.DefaultConverterFactory.class - [JAR]

├─ com.beust.jcommander.internal.Lists.class - [JAR]

├─ com.beust.jcommander.internal.Maps.class - [JAR]

├─ com.beust.jcommander.internal.Sets.class - [JAR]

uk.ac.ebi.embl.api.validation.plan

├─ uk.ac.ebi.embl.api.validation.plan.EmblEntryValidationPlan.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.EmblEntryValidationPlanProperty.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.GFF3ValidationPlan.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.GenomeAssemblyValidationPlan.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.GenomeAssemblyValidationUnit.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.ValidationPlan.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.ValidationPlanFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.ValidationPlanProperty.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.plan.ValidationUnit.class - [JAR]

uk.ac.ebi.embl.flatfile.writer.degenerator

├─ uk.ac.ebi.embl.flatfile.writer.degenerator.DEData.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.degenerator.DEGenerator.class - [JAR]

org.apache.commons.compress.compressors.lzma

├─ org.apache.commons.compress.compressors.lzma.LZMACompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lzma.LZMAUtils.class - [JAR]

org.json.zip

├─ org.json.zip.BitInputStream.class - [JAR]

├─ org.json.zip.BitOutputStream.class - [JAR]

├─ org.json.zip.BitReader.class - [JAR]

├─ org.json.zip.BitWriter.class - [JAR]

├─ org.json.zip.Compressor.class - [JAR]

├─ org.json.zip.Decompressor.class - [JAR]

├─ org.json.zip.Huff.class - [JAR]

├─ org.json.zip.JSONzip.class - [JAR]

├─ org.json.zip.Keep.class - [JAR]

├─ org.json.zip.MapKeep.class - [JAR]

├─ org.json.zip.None.class - [JAR]

├─ org.json.zip.PostMortem.class - [JAR]

├─ org.json.zip.TrieKeep.class - [JAR]

org.apache.commons.lang.math

├─ org.apache.commons.lang.math.DoubleRange.class - [JAR]

├─ org.apache.commons.lang.math.FloatRange.class - [JAR]

├─ org.apache.commons.lang.math.Fraction.class - [JAR]

├─ org.apache.commons.lang.math.IEEE754rUtils.class - [JAR]

├─ org.apache.commons.lang.math.IntRange.class - [JAR]

├─ org.apache.commons.lang.math.JVMRandom.class - [JAR]

├─ org.apache.commons.lang.math.LongRange.class - [JAR]

├─ org.apache.commons.lang.math.NumberRange.class - [JAR]

├─ org.apache.commons.lang.math.NumberUtils.class - [JAR]

├─ org.apache.commons.lang.math.RandomUtils.class - [JAR]

├─ org.apache.commons.lang.math.Range.class - [JAR]

org.json

├─ org.json.CDL.class - [JAR]

├─ org.json.Cookie.class - [JAR]

├─ org.json.CookieList.class - [JAR]

├─ org.json.HTTP.class - [JAR]

├─ org.json.HTTPTokener.class - [JAR]

├─ org.json.JSONArray.class - [JAR]

├─ org.json.JSONException.class - [JAR]

├─ org.json.JSONML.class - [JAR]

├─ org.json.JSONObject.class - [JAR]

├─ org.json.JSONString.class - [JAR]

├─ org.json.JSONStringer.class - [JAR]

├─ org.json.JSONTokener.class - [JAR]

├─ org.json.JSONWriter.class - [JAR]

├─ org.json.Kim.class - [JAR]

├─ org.json.Property.class - [JAR]

├─ org.json.XML.class - [JAR]

├─ org.json.XMLTokener.class - [JAR]

org.apache.commons.lang3.exception

├─ org.apache.commons.lang3.exception.CloneFailedException.class - [JAR]

├─ org.apache.commons.lang3.exception.ContextedException.class - [JAR]

├─ org.apache.commons.lang3.exception.ContextedRuntimeException.class - [JAR]

├─ org.apache.commons.lang3.exception.DefaultExceptionContext.class - [JAR]

├─ org.apache.commons.lang3.exception.ExceptionContext.class - [JAR]

├─ org.apache.commons.lang3.exception.ExceptionUtils.class - [JAR]

org.apache.commons.compress.compressors.xz

├─ org.apache.commons.compress.compressors.xz.XZCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.xz.XZCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.xz.XZUtils.class - [JAR]

org.apache.commons.lang

├─ org.apache.commons.lang.ArrayUtils.class - [JAR]

├─ org.apache.commons.lang.BitField.class - [JAR]

├─ org.apache.commons.lang.BooleanUtils.class - [JAR]

├─ org.apache.commons.lang.CharEncoding.class - [JAR]

├─ org.apache.commons.lang.CharRange.class - [JAR]

├─ org.apache.commons.lang.CharSet.class - [JAR]

├─ org.apache.commons.lang.CharSetUtils.class - [JAR]

├─ org.apache.commons.lang.CharUtils.class - [JAR]

├─ org.apache.commons.lang.ClassUtils.class - [JAR]

├─ org.apache.commons.lang.Entities.class - [JAR]

├─ org.apache.commons.lang.IllegalClassException.class - [JAR]

├─ org.apache.commons.lang.IncompleteArgumentException.class - [JAR]

├─ org.apache.commons.lang.IntHashMap.class - [JAR]

├─ org.apache.commons.lang.LocaleUtils.class - [JAR]

├─ org.apache.commons.lang.NotImplementedException.class - [JAR]

├─ org.apache.commons.lang.NullArgumentException.class - [JAR]

├─ org.apache.commons.lang.NumberRange.class - [JAR]

├─ org.apache.commons.lang.NumberUtils.class - [JAR]

├─ org.apache.commons.lang.ObjectUtils.class - [JAR]

├─ org.apache.commons.lang.RandomStringUtils.class - [JAR]

├─ org.apache.commons.lang.SerializationException.class - [JAR]

├─ org.apache.commons.lang.SerializationUtils.class - [JAR]

├─ org.apache.commons.lang.StringEscapeUtils.class - [JAR]

├─ org.apache.commons.lang.StringUtils.class - [JAR]

├─ org.apache.commons.lang.SystemUtils.class - [JAR]

├─ org.apache.commons.lang.UnhandledException.class - [JAR]

├─ org.apache.commons.lang.Validate.class - [JAR]

├─ org.apache.commons.lang.WordUtils.class - [JAR]

uk.ac.ebi.ena.taxonomy.taxon

├─ uk.ac.ebi.ena.taxonomy.taxon.SubmittableTaxon.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.taxon.Taxon.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.taxon.TaxonFactory.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.taxon.TaxonomyException.class - [JAR]

uk.ac.ebi.embl.flatfile.reader.genomeassembly

├─ uk.ac.ebi.embl.flatfile.reader.genomeassembly.AssemblyInfoReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genomeassembly.ChromosomeListFileReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genomeassembly.GCSEntryReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genomeassembly.UnlocalisedListFileReader.class - [JAR]

uk.ac.ebi.embl.flatfile.writer

├─ uk.ac.ebi.embl.flatfile.writer.AssemblyWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.BookChapterWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.BookEditorWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.BookPublisherWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.BookWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.ElectronicReferenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.EntryWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.FeatureLocationWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.FeatureWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.FlatFileWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.QualifierWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.WrapChar.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.WrapType.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.XRefQualifierWriter.class - [JAR]

org.apache.log4j.config

├─ org.apache.log4j.config.PropertyGetter.class - [JAR]

├─ org.apache.log4j.config.PropertyPrinter.class - [JAR]

├─ org.apache.log4j.config.PropertySetter.class - [JAR]

├─ org.apache.log4j.config.PropertySetterException.class - [JAR]

org.apache.log4j.helpers

├─ org.apache.log4j.helpers.AbsoluteTimeDateFormat.class - [JAR]

├─ org.apache.log4j.helpers.AppenderAttachableImpl.class - [JAR]

├─ org.apache.log4j.helpers.BoundedFIFO.class - [JAR]

├─ org.apache.log4j.helpers.CountingQuietWriter.class - [JAR]

├─ org.apache.log4j.helpers.CyclicBuffer.class - [JAR]

├─ org.apache.log4j.helpers.DateLayout.class - [JAR]

├─ org.apache.log4j.helpers.DateTimeDateFormat.class - [JAR]

├─ org.apache.log4j.helpers.FileWatchdog.class - [JAR]

├─ org.apache.log4j.helpers.FormattingInfo.class - [JAR]

├─ org.apache.log4j.helpers.ISO8601DateFormat.class - [JAR]

├─ org.apache.log4j.helpers.Loader.class - [JAR]

├─ org.apache.log4j.helpers.LogLog.class - [JAR]

├─ org.apache.log4j.helpers.MDCKeySetExtractor.class - [JAR]

├─ org.apache.log4j.helpers.NullEnumeration.class - [JAR]

├─ org.apache.log4j.helpers.OnlyOnceErrorHandler.class - [JAR]

├─ org.apache.log4j.helpers.OptionConverter.class - [JAR]

├─ org.apache.log4j.helpers.PatternConverter.class - [JAR]

├─ org.apache.log4j.helpers.PatternParser.class - [JAR]

├─ org.apache.log4j.helpers.QuietWriter.class - [JAR]

├─ org.apache.log4j.helpers.RelativeTimeDateFormat.class - [JAR]

├─ org.apache.log4j.helpers.SyslogQuietWriter.class - [JAR]

├─ org.apache.log4j.helpers.SyslogWriter.class - [JAR]

├─ org.apache.log4j.helpers.ThreadLocalMap.class - [JAR]

├─ org.apache.log4j.helpers.Transform.class - [JAR]

├─ org.apache.log4j.helpers.UtilLoggingLevel.class - [JAR]

uk.ac.ebi.embl.flatfile.writer.xml

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlArticleWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlAssemblyWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlBookWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlContigWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlEntryAttributeWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlEntryWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlFeatureLocationWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlFeatureWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlMasterXrefWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlPatentWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlReferenceLocationWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlReferenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlSequenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlSubmissionWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlThesisWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlUnpublishedWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.xml.XmlXrefWriter.class - [JAR]

org.apache.commons.compress.parallel

├─ org.apache.commons.compress.parallel.FileBasedScatterGatherBackingStore.class - [JAR]

├─ org.apache.commons.compress.parallel.InputStreamSupplier.class - [JAR]

├─ org.apache.commons.compress.parallel.ScatterGatherBackingStore.class - [JAR]

├─ org.apache.commons.compress.parallel.ScatterGatherBackingStoreSupplier.class - [JAR]

com.beust.jcommander.defaultprovider

├─ com.beust.jcommander.defaultprovider.PropertyFileDefaultProvider.class - [JAR]

org.apache.commons.lang3.text.translate

├─ org.apache.commons.lang3.text.translate.AggregateTranslator.class - [JAR]

├─ org.apache.commons.lang3.text.translate.CharSequenceTranslator.class - [JAR]

├─ org.apache.commons.lang3.text.translate.CodePointTranslator.class - [JAR]

├─ org.apache.commons.lang3.text.translate.EntityArrays.class - [JAR]

├─ org.apache.commons.lang3.text.translate.LookupTranslator.class - [JAR]

├─ org.apache.commons.lang3.text.translate.NumericEntityEscaper.class - [JAR]

├─ org.apache.commons.lang3.text.translate.NumericEntityUnescaper.class - [JAR]

├─ org.apache.commons.lang3.text.translate.OctalUnescaper.class - [JAR]

├─ org.apache.commons.lang3.text.translate.UnicodeEscaper.class - [JAR]

├─ org.apache.commons.lang3.text.translate.UnicodeUnescaper.class - [JAR]

uk.ac.ebi.embl.agp.writer

├─ uk.ac.ebi.embl.agp.writer.AGPFileWriter.class - [JAR]

├─ uk.ac.ebi.embl.agp.writer.AGPRowWriter.class - [JAR]

uk.ac.ebi.embl.gff3.reader

├─ uk.ac.ebi.embl.gff3.reader.GFF3AbstractLineReader.class - [JAR]

├─ uk.ac.ebi.embl.gff3.reader.GFF3FlatFileEntryReader.class - [JAR]

├─ uk.ac.ebi.embl.gff3.reader.GFF3LineReader.class - [JAR]

├─ uk.ac.ebi.embl.gff3.reader.GFF3TestRead.class - [JAR]

├─ uk.ac.ebi.embl.gff3.reader.LineReader.class - [JAR]

uk.ac.ebi.ena.taxonomy.client

├─ uk.ac.ebi.ena.taxonomy.client.TaxonomyClient.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.client.TaxonomyClientCacheImpl.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.client.TaxonomyClientImpl.class - [JAR]

├─ uk.ac.ebi.ena.taxonomy.client.TaxonomyUrl.class - [JAR]

com.beust.jcommander.converters

├─ com.beust.jcommander.converters.BaseConverter.class - [JAR]

├─ com.beust.jcommander.converters.BooleanConverter.class - [JAR]

├─ com.beust.jcommander.converters.CommaSeparatedConverter.class - [JAR]

├─ com.beust.jcommander.converters.FileConverter.class - [JAR]

├─ com.beust.jcommander.converters.IntegerConverter.class - [JAR]

├─ com.beust.jcommander.converters.LongConverter.class - [JAR]

├─ com.beust.jcommander.converters.NoConverter.class - [JAR]

├─ com.beust.jcommander.converters.StringConverter.class - [JAR]

org.apache.log4j.lf5.viewer.configure

├─ org.apache.log4j.lf5.viewer.configure.ConfigurationManager.class - [JAR]

├─ org.apache.log4j.lf5.viewer.configure.MRUFileManager.class - [JAR]

uk.ac.ebi.embl.api.validation.annotation

├─ uk.ac.ebi.embl.api.validation.annotation.Description.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.annotation.ExcludeScope.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.annotation.GroupIncludeScope.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.annotation.RemoteExclude.class - [JAR]

uk.ac.ebi.embl.api.validation.helper

├─ uk.ac.ebi.embl.api.validation.helper.ByteBufferUtils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.DataclassProvider.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.EntryUtils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.FileUtils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.FlatFileComparator.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.FlatFileComparatorException.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.FlatFileComparatorOptions.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.FlattenedMessageResult.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.FlattenedValidationPlanResult.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.QualifierHelper.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.Utils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.ValidationMessageComparator.class - [JAR]

org.apache.commons.lang3.mutable

├─ org.apache.commons.lang3.mutable.Mutable.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableBoolean.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableByte.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableDouble.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableFloat.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableInt.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableLong.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableObject.class - [JAR]

├─ org.apache.commons.lang3.mutable.MutableShort.class - [JAR]

uk.ac.ebi.embl.fasta.reader

├─ uk.ac.ebi.embl.fasta.reader.FastaFileReader.class - [JAR]

├─ uk.ac.ebi.embl.fasta.reader.FastaLineReader.class - [JAR]

org.apache.commons.lang.exception

├─ org.apache.commons.lang.exception.CloneFailedException.class - [JAR]

├─ org.apache.commons.lang.exception.ExceptionUtils.class - [JAR]

├─ org.apache.commons.lang.exception.Nestable.class - [JAR]

├─ org.apache.commons.lang.exception.NestableDelegate.class - [JAR]

├─ org.apache.commons.lang.exception.NestableError.class - [JAR]

├─ org.apache.commons.lang.exception.NestableException.class - [JAR]

├─ org.apache.commons.lang.exception.NestableRuntimeException.class - [JAR]

uk.ac.ebi.embl.api.validation

├─ uk.ac.ebi.embl.api.validation.CVTable.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.DefaultOrigin.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.EmblEntryValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.EnaValidator.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.EntryValidations.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ExtendedMessage.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ExtendedResult.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.FileName.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.FileType.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.FlatFileOrigin.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.GlobalDataSets.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.HasOrigin.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.LocationComparator.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.Origin.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.SequenceEntryUtils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.SequenceType.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.Severity.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationEngineException.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationException.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationMessage.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationMessageManager.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationPlanResult.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationResult.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidationScope.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.Validator.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.ValidatorImpl.class - [JAR]

org.apache.commons.collections.set

├─ org.apache.commons.collections.set.AbstractSerializableSetDecorator.class - [JAR]

├─ org.apache.commons.collections.set.AbstractSetDecorator.class - [JAR]

├─ org.apache.commons.collections.set.AbstractSortedSetDecorator.class - [JAR]

├─ org.apache.commons.collections.set.CompositeSet.class - [JAR]

├─ org.apache.commons.collections.set.ListOrderedSet.class - [JAR]

├─ org.apache.commons.collections.set.MapBackedSet.class - [JAR]

├─ org.apache.commons.collections.set.PredicatedSet.class - [JAR]

├─ org.apache.commons.collections.set.PredicatedSortedSet.class - [JAR]

├─ org.apache.commons.collections.set.SynchronizedSet.class - [JAR]

├─ org.apache.commons.collections.set.SynchronizedSortedSet.class - [JAR]

├─ org.apache.commons.collections.set.TransformedSet.class - [JAR]

├─ org.apache.commons.collections.set.TransformedSortedSet.class - [JAR]

├─ org.apache.commons.collections.set.TypedSet.class - [JAR]

├─ org.apache.commons.collections.set.TypedSortedSet.class - [JAR]

├─ org.apache.commons.collections.set.UnmodifiableSet.class - [JAR]

├─ org.apache.commons.collections.set.UnmodifiableSortedSet.class - [JAR]

org.apache.commons.lang3.reflect

├─ org.apache.commons.lang3.reflect.ConstructorUtils.class - [JAR]

├─ org.apache.commons.lang3.reflect.FieldUtils.class - [JAR]

├─ org.apache.commons.lang3.reflect.MemberUtils.class - [JAR]

├─ org.apache.commons.lang3.reflect.MethodUtils.class - [JAR]

├─ org.apache.commons.lang3.reflect.TypeUtils.class - [JAR]

org.apache.commons.lang.enum

├─ org.apache.commons.lang.enum.Enum.class - [JAR]

├─ org.apache.commons.lang.enum.EnumUtils.class - [JAR]

├─ org.apache.commons.lang.enum.ValuedEnum.class - [JAR]

org.apache.commons.compress.compressors.lzw

├─ org.apache.commons.compress.compressors.lzw.LZWInputStream.class - [JAR]

uk.ac.ebi.embl.flatfile

├─ uk.ac.ebi.embl.flatfile.EmblPadding.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.EmblTag.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.FlatFileUtils.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.GenbankPadding.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.GenbankTag.class - [JAR]

org.apache.commons.compress.archivers.sevenz

├─ org.apache.commons.compress.archivers.sevenz.AES256SHA256Decoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Archive.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.BindPair.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.BoundedRandomAccessFileInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.CLI.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Coder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.CoderBase.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Coders.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.DeltaDecoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Folder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.LZMA2Decoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.NID.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZFile.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZMethod.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZMethodConfiguration.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZOutputFile.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.StartHeader.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.StreamMap.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SubStreamsInfo.class - [JAR]

org.apache.commons.collections.map

├─ org.apache.commons.collections.map.AbstractHashedMap.class - [JAR]

├─ org.apache.commons.collections.map.AbstractInputCheckedMapDecorator.class - [JAR]

├─ org.apache.commons.collections.map.AbstractLinkedMap.class - [JAR]

├─ org.apache.commons.collections.map.AbstractMapDecorator.class - [JAR]

├─ org.apache.commons.collections.map.AbstractOrderedMapDecorator.class - [JAR]

├─ org.apache.commons.collections.map.AbstractReferenceMap.class - [JAR]

├─ org.apache.commons.collections.map.AbstractSortedMapDecorator.class - [JAR]

├─ org.apache.commons.collections.map.CaseInsensitiveMap.class - [JAR]

├─ org.apache.commons.collections.map.CompositeMap.class - [JAR]

├─ org.apache.commons.collections.map.DefaultedMap.class - [JAR]

├─ org.apache.commons.collections.map.FixedSizeMap.class - [JAR]

├─ org.apache.commons.collections.map.FixedSizeSortedMap.class - [JAR]

├─ org.apache.commons.collections.map.Flat3Map.class - [JAR]

├─ org.apache.commons.collections.map.HashedMap.class - [JAR]

├─ org.apache.commons.collections.map.IdentityMap.class - [JAR]

├─ org.apache.commons.collections.map.LRUMap.class - [JAR]

├─ org.apache.commons.collections.map.LazyMap.class - [JAR]

├─ org.apache.commons.collections.map.LazySortedMap.class - [JAR]

├─ org.apache.commons.collections.map.LinkedMap.class - [JAR]

├─ org.apache.commons.collections.map.ListOrderedMap.class - [JAR]

├─ org.apache.commons.collections.map.MultiKeyMap.class - [JAR]

├─ org.apache.commons.collections.map.MultiValueMap.class - [JAR]

├─ org.apache.commons.collections.map.PredicatedMap.class - [JAR]

├─ org.apache.commons.collections.map.PredicatedSortedMap.class - [JAR]

├─ org.apache.commons.collections.map.ReferenceIdentityMap.class - [JAR]

├─ org.apache.commons.collections.map.ReferenceMap.class - [JAR]

├─ org.apache.commons.collections.map.SingletonMap.class - [JAR]

├─ org.apache.commons.collections.map.StaticBucketMap.class - [JAR]

├─ org.apache.commons.collections.map.TransformedMap.class - [JAR]

├─ org.apache.commons.collections.map.TransformedSortedMap.class - [JAR]

├─ org.apache.commons.collections.map.TypedMap.class - [JAR]

├─ org.apache.commons.collections.map.TypedSortedMap.class - [JAR]

├─ org.apache.commons.collections.map.UnmodifiableEntrySet.class - [JAR]

├─ org.apache.commons.collections.map.UnmodifiableMap.class - [JAR]

├─ org.apache.commons.collections.map.UnmodifiableOrderedMap.class - [JAR]

├─ org.apache.commons.collections.map.UnmodifiableSortedMap.class - [JAR]

uk.ac.ebi.embl.api.gff3

├─ uk.ac.ebi.embl.api.gff3.GFF3Record.class - [JAR]

├─ uk.ac.ebi.embl.api.gff3.GFF3RecordSet.class - [JAR]

org.apache.commons.compress.archivers.cpio

├─ org.apache.commons.compress.archivers.cpio.CpioArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioUtil.class - [JAR]

org.apache.commons.compress.compressors.deflate

├─ org.apache.commons.compress.compressors.deflate.DeflateCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.deflate.DeflateCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.deflate.DeflateParameters.class - [JAR]

org.apache.commons.lang3.event

├─ org.apache.commons.lang3.event.EventListenerSupport.class - [JAR]

├─ org.apache.commons.lang3.event.EventUtils.class - [JAR]

org.apache.commons.compress.archivers.zip

├─ org.apache.commons.compress.archivers.zip.AbstractUnicodeExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.AsiExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.BinaryTree.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.BitStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.CircularBuffer.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ExplodingInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ExtraFieldUtils.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.FallbackZipEncoding.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.GeneralPurposeBit.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.JarMarker.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.NioZipEncoding.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ParallelScatterZipCreator.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ScatterStatistics.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ScatterZipOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Simple8BitZipEncoding.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.StreamCompressor.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnicodeCommentExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnicodePathExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnixStat.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnparseableExtraFieldData.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnrecognizedExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnshrinkingInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnsupportedZipFeatureException.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X5455_ExtendedTimestamp.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X7875_NewUnix.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Zip64ExtendedInformationExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Zip64Mode.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Zip64RequiredException.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntryPredicate.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntryRequest.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipEightByteInteger.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipEncoding.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipEncodingHelper.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipFile.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipLong.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipMethod.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipShort.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipUtil.class - [JAR]

org.apache.log4j.net

├─ org.apache.log4j.net.DefaultEvaluator.class - [JAR]

├─ org.apache.log4j.net.JMSAppender.class - [JAR]

├─ org.apache.log4j.net.JMSSink.class - [JAR]

├─ org.apache.log4j.net.SMTPAppender.class - [JAR]

├─ org.apache.log4j.net.SimpleSocketServer.class - [JAR]

├─ org.apache.log4j.net.SocketAppender.class - [JAR]

├─ org.apache.log4j.net.SocketHubAppender.class - [JAR]

├─ org.apache.log4j.net.SocketNode.class - [JAR]

├─ org.apache.log4j.net.SocketServer.class - [JAR]

├─ org.apache.log4j.net.SyslogAppender.class - [JAR]

├─ org.apache.log4j.net.TelnetAppender.class - [JAR]

├─ org.apache.log4j.net.ZeroConfSupport.class - [JAR]

org.apache.commons.compress.archivers.jar

├─ org.apache.commons.compress.archivers.jar.JarArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.jar.JarArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.jar.JarArchiveOutputStream.class - [JAR]

uk.ac.ebi.embl.api.validation.check

├─ uk.ac.ebi.embl.api.validation.check.CheckFileManager.class - [JAR]

uk.ac.ebi.embl.gff3.mapping

├─ uk.ac.ebi.embl.gff3.mapping.GFF3Mapper.class - [JAR]

org.apache.commons.collections

├─ org.apache.commons.collections.ArrayStack.class - [JAR]

├─ org.apache.commons.collections.Bag.class - [JAR]

├─ org.apache.commons.collections.BagUtils.class - [JAR]

├─ org.apache.commons.collections.BeanMap.class - [JAR]

├─ org.apache.commons.collections.BidiMap.class - [JAR]

├─ org.apache.commons.collections.BinaryHeap.class - [JAR]

├─ org.apache.commons.collections.BoundedCollection.class - [JAR]

├─ org.apache.commons.collections.BoundedFifoBuffer.class - [JAR]

├─ org.apache.commons.collections.BoundedMap.class - [JAR]

├─ org.apache.commons.collections.Buffer.class - [JAR]

├─ org.apache.commons.collections.BufferOverflowException.class - [JAR]

├─ org.apache.commons.collections.BufferUnderflowException.class - [JAR]

├─ org.apache.commons.collections.BufferUtils.class - [JAR]

├─ org.apache.commons.collections.Closure.class - [JAR]

├─ org.apache.commons.collections.ClosureUtils.class - [JAR]

├─ org.apache.commons.collections.CollectionUtils.class - [JAR]

├─ org.apache.commons.collections.ComparatorUtils.class - [JAR]

├─ org.apache.commons.collections.CursorableLinkedList.class - [JAR]

├─ org.apache.commons.collections.CursorableSubList.class - [JAR]

├─ org.apache.commons.collections.DefaultMapBag.class - [JAR]

├─ org.apache.commons.collections.DefaultMapEntry.class - [JAR]

├─ org.apache.commons.collections.DoubleOrderedMap.class - [JAR]

├─ org.apache.commons.collections.EnumerationUtils.class - [JAR]

├─ org.apache.commons.collections.ExtendedProperties.class - [JAR]

├─ org.apache.commons.collections.Factory.class - [JAR]

├─ org.apache.commons.collections.FactoryUtils.class - [JAR]

├─ org.apache.commons.collections.FastArrayList.class - [JAR]

├─ org.apache.commons.collections.FastHashMap.class - [JAR]

├─ org.apache.commons.collections.FastTreeMap.class - [JAR]

├─ org.apache.commons.collections.FunctorException.class - [JAR]

├─ org.apache.commons.collections.HashBag.class - [JAR]

├─ org.apache.commons.collections.IterableMap.class - [JAR]

├─ org.apache.commons.collections.IteratorUtils.class - [JAR]

├─ org.apache.commons.collections.KeyValue.class - [JAR]

├─ org.apache.commons.collections.LRUMap.class - [JAR]

├─ org.apache.commons.collections.ListUtils.class - [JAR]

├─ org.apache.commons.collections.MapIterator.class - [JAR]

├─ org.apache.commons.collections.MapUtils.class - [JAR]

├─ org.apache.commons.collections.MultiHashMap.class - [JAR]

├─ org.apache.commons.collections.MultiMap.class - [JAR]

├─ org.apache.commons.collections.OrderedBidiMap.class - [JAR]

├─ org.apache.commons.collections.OrderedIterator.class - [JAR]

├─ org.apache.commons.collections.OrderedMap.class - [JAR]

├─ org.apache.commons.collections.OrderedMapIterator.class - [JAR]

├─ org.apache.commons.collections.Predicate.class - [JAR]

├─ org.apache.commons.collections.PredicateUtils.class - [JAR]

├─ org.apache.commons.collections.PriorityQueue.class - [JAR]

├─ org.apache.commons.collections.ProxyMap.class - [JAR]

├─ org.apache.commons.collections.ReferenceMap.class - [JAR]

├─ org.apache.commons.collections.ResettableIterator.class - [JAR]

├─ org.apache.commons.collections.ResettableListIterator.class - [JAR]

├─ org.apache.commons.collections.SequencedHashMap.class - [JAR]

├─ org.apache.commons.collections.SetUtils.class - [JAR]

├─ org.apache.commons.collections.SortedBag.class - [JAR]

├─ org.apache.commons.collections.SortedBidiMap.class - [JAR]

├─ org.apache.commons.collections.StaticBucketMap.class - [JAR]

├─ org.apache.commons.collections.SynchronizedPriorityQueue.class - [JAR]

├─ org.apache.commons.collections.Transformer.class - [JAR]

├─ org.apache.commons.collections.TransformerUtils.class - [JAR]

├─ org.apache.commons.collections.TreeBag.class - [JAR]

├─ org.apache.commons.collections.UnboundedFifoBuffer.class - [JAR]

├─ org.apache.commons.collections.Unmodifiable.class - [JAR]

org.apache.commons.lang.builder

├─ org.apache.commons.lang.builder.CompareToBuilder.class - [JAR]

├─ org.apache.commons.lang.builder.EqualsBuilder.class - [JAR]

├─ org.apache.commons.lang.builder.HashCodeBuilder.class - [JAR]

├─ org.apache.commons.lang.builder.IDKey.class - [JAR]

├─ org.apache.commons.lang.builder.ReflectionToStringBuilder.class - [JAR]

├─ org.apache.commons.lang.builder.StandardToStringStyle.class - [JAR]

├─ org.apache.commons.lang.builder.ToStringBuilder.class - [JAR]

├─ org.apache.commons.lang.builder.ToStringStyle.class - [JAR]

com.beust.jcommander

├─ com.beust.jcommander.IDefaultProvider.class - [JAR]

├─ com.beust.jcommander.IStringConverter.class - [JAR]

├─ com.beust.jcommander.IStringConverterFactory.class - [JAR]

├─ com.beust.jcommander.JCommander.class - [JAR]

├─ com.beust.jcommander.Parameter.class - [JAR]

├─ com.beust.jcommander.ParameterDescription.class - [JAR]

├─ com.beust.jcommander.ParameterException.class - [JAR]

├─ com.beust.jcommander.Parameters.class - [JAR]

├─ com.beust.jcommander.ResourceBundle.class - [JAR]

org.apache.log4j.jmx

├─ org.apache.log4j.jmx.AbstractDynamicMBean.class - [JAR]

├─ org.apache.log4j.jmx.Agent.class - [JAR]

├─ org.apache.log4j.jmx.AppenderDynamicMBean.class - [JAR]

├─ org.apache.log4j.jmx.HierarchyDynamicMBean.class - [JAR]

├─ org.apache.log4j.jmx.LayoutDynamicMBean.class - [JAR]

├─ org.apache.log4j.jmx.LoggerDynamicMBean.class - [JAR]

├─ org.apache.log4j.jmx.MethodUnion.class - [JAR]

uk.ac.ebi.embl.api.project

├─ uk.ac.ebi.embl.api.project.Center.class - [JAR]

├─ uk.ac.ebi.embl.api.project.Project.class - [JAR]

org.apache.commons.collections.bidimap

├─ org.apache.commons.collections.bidimap.AbstractBidiMapDecorator.class - [JAR]

├─ org.apache.commons.collections.bidimap.AbstractDualBidiMap.class - [JAR]

├─ org.apache.commons.collections.bidimap.AbstractOrderedBidiMapDecorator.class - [JAR]

├─ org.apache.commons.collections.bidimap.AbstractSortedBidiMapDecorator.class - [JAR]

├─ org.apache.commons.collections.bidimap.DualHashBidiMap.class - [JAR]

├─ org.apache.commons.collections.bidimap.DualTreeBidiMap.class - [JAR]

├─ org.apache.commons.collections.bidimap.TreeBidiMap.class - [JAR]

├─ org.apache.commons.collections.bidimap.UnmodifiableBidiMap.class - [JAR]

├─ org.apache.commons.collections.bidimap.UnmodifiableOrderedBidiMap.class - [JAR]

├─ org.apache.commons.collections.bidimap.UnmodifiableSortedBidiMap.class - [JAR]

org.apache.commons.dbutils

├─ org.apache.commons.dbutils.AbstractQueryRunner.class - [JAR]

├─ org.apache.commons.dbutils.AsyncQueryRunner.class - [JAR]

├─ org.apache.commons.dbutils.BasicRowProcessor.class - [JAR]

├─ org.apache.commons.dbutils.BeanProcessor.class - [JAR]

├─ org.apache.commons.dbutils.DbUtils.class - [JAR]

├─ org.apache.commons.dbutils.ProxyFactory.class - [JAR]

├─ org.apache.commons.dbutils.QueryLoader.class - [JAR]

├─ org.apache.commons.dbutils.QueryRunner.class - [JAR]

├─ org.apache.commons.dbutils.ResultSetHandler.class - [JAR]

├─ org.apache.commons.dbutils.ResultSetIterator.class - [JAR]

├─ org.apache.commons.dbutils.RowProcessor.class - [JAR]

org.apache.log4j.or

├─ org.apache.log4j.or.DefaultRenderer.class - [JAR]

├─ org.apache.log4j.or.ObjectRenderer.class - [JAR]

├─ org.apache.log4j.or.RendererMap.class - [JAR]

├─ org.apache.log4j.or.ThreadGroupRenderer.class - [JAR]

org.apache.commons.compress

├─ org.apache.commons.compress.PasswordRequiredException.class - [JAR]

org.apache.commons.compress.changes

├─ org.apache.commons.compress.changes.Change.class - [JAR]

├─ org.apache.commons.compress.changes.ChangeSet.class - [JAR]

├─ org.apache.commons.compress.changes.ChangeSetPerformer.class - [JAR]

├─ org.apache.commons.compress.changes.ChangeSetResults.class - [JAR]

org.apache.commons.compress.compressors.gzip

├─ org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.gzip.GzipCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.gzip.GzipParameters.class - [JAR]

├─ org.apache.commons.compress.compressors.gzip.GzipUtils.class - [JAR]

uk.ac.ebi.embl.api.validation.fixer.feature

├─ uk.ac.ebi.embl.api.validation.fixer.feature.AssemblyFeatureRemoteLocationFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.CollectionDateQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.EC_numberValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.EC_numberfromProductValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.ExclusiveQualifierTransformToNoteQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.ExperimentQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.FeatureLocationFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.FeatureQualifierDuplicateValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.FeatureQualifierRenameFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.FeatureRenameFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.Isolation_sourceQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.Lat_lonValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.Linkage_evidenceFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.LocusTagValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.ObsoleteFeatureFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.ObsoleteFeaturetoNewFeatureFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.QualifierValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.QualifierWithinQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.feature.Transl_exceptLocationFix.class - [JAR]

uk.ac.ebi.embl.flatfile.writer.embl

├─ uk.ac.ebi.embl.flatfile.writer.embl.ACStarWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.ACWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.AHWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.ASWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.CCWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.COWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.DEWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.DRWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.DTWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblArticleWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblEntryWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblOrganismWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblPatentWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblPublicationWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblReferenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblSequenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblSubmissionWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblThesisWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.EmblUnpublishedWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.FHWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.FTWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.IDWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.KWWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.MasterCONWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.MasterTPAWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.MasterWGSWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.OCWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.OGWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.OSWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.PAWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.PRWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RAWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RCWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RGWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RLWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RNWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RPWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RTWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.RXWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.embl.STStarWriter.class - [JAR]

uk.ac.ebi.embl.flatfile.validation

├─ uk.ac.ebi.embl.flatfile.validation.FlatFileValidations.class - [JAR]

uk.ac.ebi.embl.api.validation.fixer.entry

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AgpComponentAccessionFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AgptoConFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AnticodonQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AssemblyLevelDataClassFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AssemblyLevelEntryNameFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AssemblyLevelSubmitterReferenceFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.AssemblyTopologyFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.CDS_RNA_LocusFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.ContoAGPFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.DataclassFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.DeleteEntryOnErrorFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.GaptoAssemblyGapFeatureFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.GeneAssociatedwithFeatureFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.GeneAssociationFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.GeneSynonymFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.HoldDateFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.JournalFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.LocusTagAssociationFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.MoleculeTypeAndQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.NonContoAGPFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.ProteinIdRemovalFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.ReferencePositionFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.SubmitterAccessionFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.entry.TPA_dataclass_Fix.class - [JAR]

uk.ac.ebi.embl.template.reader

├─ uk.ac.ebi.embl.template.reader.CSVLine.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.CSVReader.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.CSVWriter.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.Environment.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.FASTAHeaderParser.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.FASTAReaderTokenInfo.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.FASTAUtils.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.FTUploadCSVReader.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.FastaSpreadsheetConverter.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.FieldUniquenessChecker.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.MutableTemplateInfo.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.SectionExtractor.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.StringBuilderLineIterator.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.StringBuilderUtils.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateEntryProcessor.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateException.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateIDs.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateInfo.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateLoader.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplatePreProcessor.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateProcessor.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateProcessorConstants.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateProcessorResultSet.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateSectionInfo.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateSet.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateToken.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateTokenGroupInfo.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateTokenInfo.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateTokenType.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateVariables.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateVariablesSet.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateVersions.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TemplateXMLHandler.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TokenIncrementor.class - [JAR]

├─ uk.ac.ebi.embl.template.reader.TokenMapConverter.class - [JAR]

org.apache.log4j.chainsaw

├─ org.apache.log4j.chainsaw.ControlPanel.class - [JAR]

├─ org.apache.log4j.chainsaw.DetailPanel.class - [JAR]

├─ org.apache.log4j.chainsaw.EventDetails.class - [JAR]

├─ org.apache.log4j.chainsaw.ExitAction.class - [JAR]

├─ org.apache.log4j.chainsaw.LoadXMLAction.class - [JAR]

├─ org.apache.log4j.chainsaw.LoggingReceiver.class - [JAR]

├─ org.apache.log4j.chainsaw.Main.class - [JAR]

├─ org.apache.log4j.chainsaw.MyTableModel.class - [JAR]

├─ org.apache.log4j.chainsaw.XMLFileHandler.class - [JAR]

org.apache.log4j.nt

├─ org.apache.log4j.nt.NTEventLogAppender.class - [JAR]

org.apache.commons.lang3.tuple

├─ org.apache.commons.lang3.tuple.ImmutablePair.class - [JAR]

├─ org.apache.commons.lang3.tuple.MutablePair.class - [JAR]

├─ org.apache.commons.lang3.tuple.Pair.class - [JAR]

uk.ac.ebi.embl.api.translation

├─ uk.ac.ebi.embl.api.translation.AbstractTranslator.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.CdsTranslator.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.Codon.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.CodonTranslator.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.SimpleTranslator.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.TranslationResult.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.TranslationResultWriter.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.TranslationTable.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.TranslationTableDescriptor.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.TranslationTableFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.Translator.class - [JAR]

├─ uk.ac.ebi.embl.api.translation.UnAmbiguousCodon.class - [JAR]

org.apache.log4j.varia

├─ org.apache.log4j.varia.DenyAllFilter.class - [JAR]

├─ org.apache.log4j.varia.ExternallyRolledFileAppender.class - [JAR]

├─ org.apache.log4j.varia.FallbackErrorHandler.class - [JAR]

├─ org.apache.log4j.varia.HUP.class - [JAR]

├─ org.apache.log4j.varia.HUPNode.class - [JAR]

├─ org.apache.log4j.varia.LevelMatchFilter.class - [JAR]

├─ org.apache.log4j.varia.LevelRangeFilter.class - [JAR]

├─ org.apache.log4j.varia.NullAppender.class - [JAR]

├─ org.apache.log4j.varia.ReloadingPropertyConfigurator.class - [JAR]

├─ org.apache.log4j.varia.Roller.class - [JAR]

├─ org.apache.log4j.varia.StringMatchFilter.class - [JAR]

org.apache.commons.dbutils.wrappers

├─ org.apache.commons.dbutils.wrappers.SqlNullCheckedResultSet.class - [JAR]

├─ org.apache.commons.dbutils.wrappers.StringTrimmedResultSet.class - [JAR]

org.apache.commons.lang.enums

├─ org.apache.commons.lang.enums.Enum.class - [JAR]

├─ org.apache.commons.lang.enums.EnumUtils.class - [JAR]

├─ org.apache.commons.lang.enums.ValuedEnum.class - [JAR]

org.apache.commons.compress.archivers.arj

├─ org.apache.commons.compress.archivers.arj.ArjArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.arj.ArjArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.arj.LocalFileHeader.class - [JAR]

├─ org.apache.commons.compress.archivers.arj.MainHeader.class - [JAR]

org.apache.commons.lang.text

├─ org.apache.commons.lang.text.CompositeFormat.class - [JAR]

├─ org.apache.commons.lang.text.ExtendedMessageFormat.class - [JAR]

├─ org.apache.commons.lang.text.FormatFactory.class - [JAR]

├─ org.apache.commons.lang.text.StrBuilder.class - [JAR]

├─ org.apache.commons.lang.text.StrLookup.class - [JAR]

├─ org.apache.commons.lang.text.StrMatcher.class - [JAR]

├─ org.apache.commons.lang.text.StrSubstitutor.class - [JAR]

├─ org.apache.commons.lang.text.StrTokenizer.class - [JAR]

uk.ac.ebi.ena.xml

├─ uk.ac.ebi.ena.xml.SimpleXmlWriter.class - [JAR]

org.apache.commons.lang3.time

├─ org.apache.commons.lang3.time.DateFormatUtils.class - [JAR]

├─ org.apache.commons.lang3.time.DateUtils.class - [JAR]

├─ org.apache.commons.lang3.time.DurationFormatUtils.class - [JAR]

├─ org.apache.commons.lang3.time.FastDateFormat.class - [JAR]

├─ org.apache.commons.lang3.time.FormatCache.class - [JAR]

├─ org.apache.commons.lang3.time.StopWatch.class - [JAR]

uk.ac.ebi.embl.api.entry.reference

├─ uk.ac.ebi.embl.api.entry.reference.Article.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Book.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.ElectronicReference.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Patent.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Person.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Publication.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Reference.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.ReferenceFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Submission.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Thesis.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.reference.Unpublished.class - [JAR]

org.apache.log4j

├─ org.apache.log4j.Appender.class - [JAR]

├─ org.apache.log4j.AppenderSkeleton.class - [JAR]

├─ org.apache.log4j.AsyncAppender.class - [JAR]

├─ org.apache.log4j.BasicConfigurator.class - [JAR]

├─ org.apache.log4j.Category.class - [JAR]

├─ org.apache.log4j.CategoryKey.class - [JAR]

├─ org.apache.log4j.ConsoleAppender.class - [JAR]

├─ org.apache.log4j.DailyRollingFileAppender.class - [JAR]

├─ org.apache.log4j.DefaultCategoryFactory.class - [JAR]

├─ org.apache.log4j.DefaultThrowableRenderer.class - [JAR]

├─ org.apache.log4j.Dispatcher.class - [JAR]

├─ org.apache.log4j.EnhancedPatternLayout.class - [JAR]

├─ org.apache.log4j.EnhancedThrowableRenderer.class - [JAR]

├─ org.apache.log4j.FileAppender.class - [JAR]

├─ org.apache.log4j.HTMLLayout.class - [JAR]

├─ org.apache.log4j.Hierarchy.class - [JAR]

├─ org.apache.log4j.Layout.class - [JAR]

├─ org.apache.log4j.Level.class - [JAR]

├─ org.apache.log4j.LogMF.class - [JAR]

├─ org.apache.log4j.LogManager.class - [JAR]

├─ org.apache.log4j.LogSF.class - [JAR]

├─ org.apache.log4j.LogXF.class - [JAR]

├─ org.apache.log4j.Logger.class - [JAR]

├─ org.apache.log4j.MDC.class - [JAR]

├─ org.apache.log4j.NDC.class - [JAR]

├─ org.apache.log4j.NameValue.class - [JAR]

├─ org.apache.log4j.PatternLayout.class - [JAR]

├─ org.apache.log4j.Priority.class - [JAR]

├─ org.apache.log4j.PropertyConfigurator.class - [JAR]

├─ org.apache.log4j.PropertyWatchdog.class - [JAR]

├─ org.apache.log4j.ProvisionNode.class - [JAR]

├─ org.apache.log4j.RollingCalendar.class - [JAR]

├─ org.apache.log4j.RollingFileAppender.class - [JAR]

├─ org.apache.log4j.SimpleLayout.class - [JAR]

├─ org.apache.log4j.SortedKeyEnumeration.class - [JAR]

├─ org.apache.log4j.TTCCLayout.class - [JAR]

├─ org.apache.log4j.WriterAppender.class - [JAR]

org.apache.commons.compress.archivers.ar

├─ org.apache.commons.compress.archivers.ar.ArArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.ar.ArArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.ar.ArArchiveOutputStream.class - [JAR]

org.apache.log4j.spi

├─ org.apache.log4j.spi.AppenderAttachable.class - [JAR]

├─ org.apache.log4j.spi.Configurator.class - [JAR]

├─ org.apache.log4j.spi.DefaultRepositorySelector.class - [JAR]

├─ org.apache.log4j.spi.ErrorCode.class - [JAR]

├─ org.apache.log4j.spi.ErrorHandler.class - [JAR]

├─ org.apache.log4j.spi.Filter.class - [JAR]

├─ org.apache.log4j.spi.HierarchyEventListener.class - [JAR]

├─ org.apache.log4j.spi.LocationInfo.class - [JAR]

├─ org.apache.log4j.spi.LoggerFactory.class - [JAR]

├─ org.apache.log4j.spi.LoggerRepository.class - [JAR]

├─ org.apache.log4j.spi.LoggingEvent.class - [JAR]

├─ org.apache.log4j.spi.NOPLogger.class - [JAR]

├─ org.apache.log4j.spi.NOPLoggerRepository.class - [JAR]

├─ org.apache.log4j.spi.NullWriter.class - [JAR]

├─ org.apache.log4j.spi.OptionHandler.class - [JAR]

├─ org.apache.log4j.spi.RendererSupport.class - [JAR]

├─ org.apache.log4j.spi.RepositorySelector.class - [JAR]

├─ org.apache.log4j.spi.RootCategory.class - [JAR]

├─ org.apache.log4j.spi.RootLogger.class - [JAR]

├─ org.apache.log4j.spi.ThrowableInformation.class - [JAR]

├─ org.apache.log4j.spi.ThrowableRenderer.class - [JAR]

├─ org.apache.log4j.spi.ThrowableRendererSupport.class - [JAR]

├─ org.apache.log4j.spi.TriggeringEventEvaluator.class - [JAR]

├─ org.apache.log4j.spi.VectorWriter.class - [JAR]

uk.ac.ebi.embl.api.validation.check.feature

├─ uk.ac.ebi.embl.api.validation.check.feature.AntiCodonQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.CdsFeatureAminoAcidCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.CdsFeatureTranslationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.CollectionDateQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.DeprecatedQualifiersCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.EC_numberCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.EC_numberFormatCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.ExclusiveQualifiersCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.ExclusiveQualifiersWithSameValueCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.FeatureKeyCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.FeatureLengthCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.FeatureLocationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.FeatureLocationTypeCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.FeatureQualifiersRequiredCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.FeatureValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.IntronLengthWithinCDSCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.NCBIQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.NcRNAQualifierValueAndQualifierPatternCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.PCRPrimersQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.QualifierAndRequiredQualifierinFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.QualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.QualifierPatternAndQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.QualifierValueNotQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.QualifierValueNotQualifierPatternCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.QualifierValueRequiredQualifierStartsWithValueCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.TranslExceptQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.feature.UnbalancedParenthesesCheck.class - [JAR]

uk.ac.ebi.embl.api.storage.tsv

├─ uk.ac.ebi.embl.api.storage.tsv.TSVReader.class - [JAR]

uk.ac.ebi.embl.flatfile.reader

├─ uk.ac.ebi.embl.flatfile.reader.BlockReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.BufferedFileLineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.ContigLocationMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.ContigLocationsMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.DblinkXRefMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.ElectronicReferenceMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.EntryReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FeatureLocationMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FeatureLocationsMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FeatureReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FlatFileEntryReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FlatFileLineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FlatFileMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.FlatFileReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.ILineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.LineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.LineReaderCache.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.LineReaderWrapper.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.MultiLineBlockReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.OrganismMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.QualifierMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.ReaderOptions.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.SequenceReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.SingleLineBlockReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.StatusMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.SubmissionMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.ThesisMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.UnpublishedMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.XRefMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.XRefQualifierMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.XRefTaxonMatcher.class - [JAR]

uk.ac.ebi.embl.api.entry.qualifier

├─ uk.ac.ebi.embl.api.entry.qualifier.AminoAcid.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.AminoAcidFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.AnticodonQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.CodonQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.CodonStartQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.CompoundLocationQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.LocationQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.OrganismQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.ProteinIdQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.Qualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.QualifierFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.Rpt_Unit_RangeQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.Tag_PeptideQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.TranslExceptQualifier.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.qualifier.TranslTableQualifier.class - [JAR]

org.apache.commons.lang.reflect

├─ org.apache.commons.lang.reflect.ConstructorUtils.class - [JAR]

├─ org.apache.commons.lang.reflect.FieldUtils.class - [JAR]

├─ org.apache.commons.lang.reflect.MemberUtils.class - [JAR]

├─ org.apache.commons.lang.reflect.MethodUtils.class - [JAR]

uk.ac.ebi.embl.api.contant

├─ uk.ac.ebi.embl.api.contant.Constant.class - [JAR]

difflib

├─ difflib.ChangeDelta.class - [JAR]

├─ difflib.Chunk.class - [JAR]

├─ difflib.DeleteDelta.class - [JAR]

├─ difflib.Delta.class - [JAR]

├─ difflib.DeltaComparator.class - [JAR]

├─ difflib.DiffAlgorithm.class - [JAR]

├─ difflib.DiffException.class - [JAR]

├─ difflib.DiffRow.class - [JAR]

├─ difflib.DiffRowGenerator.class - [JAR]

├─ difflib.DiffUtils.class - [JAR]

├─ difflib.InsertDelta.class - [JAR]

├─ difflib.Patch.class - [JAR]

├─ difflib.PatchFailedException.class - [JAR]

├─ difflib.StringUtills.class - [JAR]

uk.ac.ebi.embl.api.taxonomy

├─ uk.ac.ebi.embl.api.taxonomy.HasTaxon.class - [JAR]

uk.ac.ebi.embl.api.entry.location

├─ uk.ac.ebi.embl.api.entry.location.AbstractLocation.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Base.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Between.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.CompoundLocation.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Gap.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Join.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.LocalBase.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.LocalBetween.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.LocalLocation.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.LocalRange.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Location.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.LocationFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Order.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.Range.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.RemoteBase.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.RemoteBetween.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.RemoteLocation.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.location.RemoteRange.class - [JAR]

org.apache.commons.lang3.concurrent

├─ org.apache.commons.lang3.concurrent.AtomicInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.AtomicSafeInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.BackgroundInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.BasicThreadFactory.class - [JAR]

├─ org.apache.commons.lang3.concurrent.CallableBackgroundInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.ConcurrentException.class - [JAR]

├─ org.apache.commons.lang3.concurrent.ConcurrentInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.ConcurrentRuntimeException.class - [JAR]

├─ org.apache.commons.lang3.concurrent.ConcurrentUtils.class - [JAR]

├─ org.apache.commons.lang3.concurrent.ConstantInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.LazyInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.MultiBackgroundInitializer.class - [JAR]

├─ org.apache.commons.lang3.concurrent.TimedSemaphore.class - [JAR]

uk.ac.ebi.embl.api.validation.check.genomeassembly

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoAnalysisIdCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoCoverageCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoDuplicationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoMinGapLengthCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoNameCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoPlatformCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoProgramCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoProjectIdheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoSamplewithDifferentProjectCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoSubmissionIdCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.AssemblyInfoTypeCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.ChromosomeListAnalysisIdCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.ChromosomeListChromosomeLocationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.ChromosomeListChromosomeNameCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.ChromosomeListChromosomeTypeCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.ChromosomeListObjectNameCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.GenomeAssemblyValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.UnlocalisedListChromosomeValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.genomeassembly.UnlocalisedListObjectNameValidationCheck.class - [JAR]

uk.ac.ebi.embl.api.validation.fixer.sourcefeature

├─ uk.ac.ebi.embl.api.validation.fixer.sourcefeature.AssemblySourceQualiferFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sourcefeature.CountryQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sourcefeature.HostQualifierFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sourcefeature.SourceQualifierMissingFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sourcefeature.StrainQualifierValueFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sourcefeature.TaxonomicDivisionNotQualifierFix.class - [JAR]

uk.ac.ebi.embl.flatfile.writer.genbank

├─ uk.ac.ebi.embl.flatfile.writer.genbank.AccessionWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.AuthorsWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.CommentWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.ConsrtmWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.ContigWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.DblinkWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.DefinitionWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.FeaturesWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankArticleWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankEntryWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankOrganismWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankPatentWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankPublicationWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankReferenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankSequenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankSubmissionWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankThesisWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.GenbankUnpublishedWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.JournalWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.KeywordsWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.LocusWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.OrganismWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.PrimaryWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.ProjectWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.PubmedWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.ReferenceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.RemarkWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.SourceWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.TitleWriter.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.writer.genbank.VersionWriter.class - [JAR]

org.apache.log4j.or.sax

├─ org.apache.log4j.or.sax.AttributesRenderer.class - [JAR]

uk.ac.ebi.embl.flatfile.reader.genbank

├─ uk.ac.ebi.embl.flatfile.reader.genbank.AccessionReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.AuthorsReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.BaseCountReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.CommentReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.ConsrtmReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.ContigReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.DblinkReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.DefinitionReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.FeaturesReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankArticleMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankBookMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankEntryReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankLineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankPatentMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankPersonMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.GenbankReferenceLocationMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.JournalReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.KeywordsReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.LocusReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.MedlineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.OrganismReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.OriginReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.PrimaryReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.ProjectReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.PubmedReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.ReferenceReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.RemarkReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.SegmentReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.SourceReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.StandardReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.TitleReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.genbank.VersionReader.class - [JAR]

org.apache.commons.lang.mutable

├─ org.apache.commons.lang.mutable.Mutable.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableBoolean.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableByte.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableDouble.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableFloat.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableInt.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableLong.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableObject.class - [JAR]

├─ org.apache.commons.lang.mutable.MutableShort.class - [JAR]

uk.ac.ebi.embl.agp.reader

├─ uk.ac.ebi.embl.agp.reader.AGPFileReader.class - [JAR]

├─ uk.ac.ebi.embl.agp.reader.AGPLineReader.class - [JAR]

uk.ac.ebi.embl.api.validation.check.entry

├─ uk.ac.ebi.embl.api.validation.check.entry.AGPValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.AntiCodonTranslationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.AsciiCharacterCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.AssemblyLevelDataclassCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.AssemblyLevelEntryNameCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.AssemblySecondarySpanCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.AssemblyTopologyCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.Assembly_gapFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.CitationQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.DataclassCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.DuplicateFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.EntryContigsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.EntryFeatureLocationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.EntryMolTypeCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.EntryNameExistsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.EntryProjectIdCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.EntryValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.ExonFeaturesIntervalCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.FeatureAndSourceQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.FeaturewithRemoteLocationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.GapFeatureBasesCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.GapFeatureLocationsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.GeneAssociationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.GeneFeatureLocusTagCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.HoldDateCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.KWCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.LocusTagAssociationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.LocusTagPrefixCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.LocustagExistsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.MasterEntryDescriptionCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.MasterEntryExistsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.MasterEntrySourceCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.MoleculeTypeAndDataclassCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.MoleculeTypeAndFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.MoltypeExistsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.OperonFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.OrganismAndPermittedQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.PeptideFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.PrimaryAccessionCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.PropeptideLocationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.ProteinIdExistsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.QualifierAndRequiredQualifierinEntryCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.QualifierPatternAndFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.QualifierValueNotQualifierEntryCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.QualifierValueRequiredQualifierValueEntryCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.ReferenceCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.SequenceBasesCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.entry.WGSGapCheck.class - [JAR]

uk.ac.ebi.embl.fasta.writer

├─ uk.ac.ebi.embl.fasta.writer.FastaFileWriter.class - [JAR]

├─ uk.ac.ebi.embl.fasta.writer.FastaSequenceWriter.class - [JAR]

uk.ac.ebi.embl.api.validation.cvtable

├─ uk.ac.ebi.embl.api.validation.cvtable.cv_fqual_value_fix_table.class - [JAR]

uk.ac.ebi.embl.api.storage

├─ uk.ac.ebi.embl.api.storage.CachedFileDataManager.class - [JAR]

├─ uk.ac.ebi.embl.api.storage.DataManager.class - [JAR]

├─ uk.ac.ebi.embl.api.storage.DataRow.class - [JAR]

├─ uk.ac.ebi.embl.api.storage.DataSet.class - [JAR]

uk.ac.ebi.embl.api.validation.check.sequence

├─ uk.ac.ebi.embl.api.validation.check.sequence.AnnotationOnlySequenceCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sequence.SequenceBasesCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sequence.SequenceExistsCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sequence.SequenceLengthCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sequence.SequenceToGapFeatureBasesCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sequence.SequenceValidationCheck.class - [JAR]

org.apache.commons.collections.buffer

├─ org.apache.commons.collections.buffer.AbstractBufferDecorator.class - [JAR]

├─ org.apache.commons.collections.buffer.BlockingBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.BoundedBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.BoundedFifoBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.CircularFifoBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.PredicatedBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.PriorityBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.SynchronizedBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.TransformedBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.TypedBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.UnboundedFifoBuffer.class - [JAR]

├─ org.apache.commons.collections.buffer.UnmodifiableBuffer.class - [JAR]

org.apache.log4j.lf5

├─ org.apache.log4j.lf5.AppenderFinalizer.class - [JAR]

├─ org.apache.log4j.lf5.DefaultLF5Configurator.class - [JAR]

├─ org.apache.log4j.lf5.LF5Appender.class - [JAR]

├─ org.apache.log4j.lf5.Log4JLogRecord.class - [JAR]

├─ org.apache.log4j.lf5.LogLevel.class - [JAR]

├─ org.apache.log4j.lf5.LogLevelFormatException.class - [JAR]

├─ org.apache.log4j.lf5.LogRecord.class - [JAR]

├─ org.apache.log4j.lf5.LogRecordFilter.class - [JAR]

├─ org.apache.log4j.lf5.PassingLogRecordFilter.class - [JAR]

├─ org.apache.log4j.lf5.StartLogFactor5.class - [JAR]

difflib.myers

├─ difflib.myers.DiffException.class - [JAR]

├─ difflib.myers.DiffNode.class - [JAR]

├─ difflib.myers.DifferentiationFailedException.class - [JAR]

├─ difflib.myers.MyersDiff.class - [JAR]

├─ difflib.myers.PathNode.class - [JAR]

├─ difflib.myers.Snake.class - [JAR]

org.apache.commons.lang3.math

├─ org.apache.commons.lang3.math.Fraction.class - [JAR]

├─ org.apache.commons.lang3.math.IEEE754rUtils.class - [JAR]

├─ org.apache.commons.lang3.math.NumberUtils.class - [JAR]

uk.ac.ebi.embl.api.validation.helper.location

├─ uk.ac.ebi.embl.api.validation.helper.location.LocationStringParser.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.location.LocationToStringCoverter.class - [JAR]

uk.ac.ebi.embl.api.validation.helper.taxon

├─ uk.ac.ebi.embl.api.validation.helper.taxon.TaxonHelper.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.helper.taxon.TaxonHelperImpl.class - [JAR]

org.apache.commons.collections.functors

├─ org.apache.commons.collections.functors.AllPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.AndPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.AnyPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.ChainedClosure.class - [JAR]

├─ org.apache.commons.collections.functors.ChainedTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.CloneTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.ClosureTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.ConstantFactory.class - [JAR]

├─ org.apache.commons.collections.functors.ConstantTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.EqualPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.ExceptionClosure.class - [JAR]

├─ org.apache.commons.collections.functors.ExceptionFactory.class - [JAR]

├─ org.apache.commons.collections.functors.ExceptionPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.ExceptionTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.FactoryTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.FalsePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.ForClosure.class - [JAR]

├─ org.apache.commons.collections.functors.FunctorUtils.class - [JAR]

├─ org.apache.commons.collections.functors.IdentityPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.IfClosure.class - [JAR]

├─ org.apache.commons.collections.functors.InstanceofPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.InstantiateFactory.class - [JAR]

├─ org.apache.commons.collections.functors.InstantiateTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.InvokerTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.MapTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.NOPClosure.class - [JAR]

├─ org.apache.commons.collections.functors.NOPTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.NonePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.NotNullPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.NotPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.NullIsExceptionPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.NullIsFalsePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.NullIsTruePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.NullPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.OnePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.OrPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.PredicateDecorator.class - [JAR]

├─ org.apache.commons.collections.functors.PredicateTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.PrototypeFactory.class - [JAR]

├─ org.apache.commons.collections.functors.StringValueTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.SwitchClosure.class - [JAR]

├─ org.apache.commons.collections.functors.SwitchTransformer.class - [JAR]

├─ org.apache.commons.collections.functors.TransformedPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.TransformerClosure.class - [JAR]

├─ org.apache.commons.collections.functors.TransformerPredicate.class - [JAR]

├─ org.apache.commons.collections.functors.TruePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.UniquePredicate.class - [JAR]

├─ org.apache.commons.collections.functors.WhileClosure.class - [JAR]

org.apache.commons.compress.compressors.z

├─ org.apache.commons.compress.compressors.z.ZCompressorInputStream.class - [JAR]

org.apache.log4j.pattern

├─ org.apache.log4j.pattern.BridgePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.BridgePatternParser.class - [JAR]

├─ org.apache.log4j.pattern.CachedDateFormat.class - [JAR]

├─ org.apache.log4j.pattern.ClassNamePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.DatePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.FileDatePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.FileLocationPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.FormattingInfo.class - [JAR]

├─ org.apache.log4j.pattern.FullLocationPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.IntegerPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.LevelPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.LineLocationPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.LineSeparatorPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.LiteralPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.LogEvent.class - [JAR]

├─ org.apache.log4j.pattern.LoggerPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.LoggingEventPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.MessagePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.MethodLocationPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.NDCPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.NameAbbreviator.class - [JAR]

├─ org.apache.log4j.pattern.NamePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.PatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.PatternParser.class - [JAR]

├─ org.apache.log4j.pattern.PropertiesPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.RelativeTimePatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.SequenceNumberPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.ThreadPatternConverter.class - [JAR]

├─ org.apache.log4j.pattern.ThrowableInformationPatternConverter.class - [JAR]

uk.ac.ebi.embl.api.entry.sequence

├─ uk.ac.ebi.embl.api.entry.sequence.AbstractSequence.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.AccessionFormatException.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.Complementer.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.ReverseComplementer.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.Segment.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.SegmentFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.Sequence.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.SequenceAccession.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.sequence.SequenceFactory.class - [JAR]

uk.ac.ebi.embl.gff3.writer

├─ uk.ac.ebi.embl.gff3.writer.GFF3EntryWriter.class - [JAR]

├─ uk.ac.ebi.embl.gff3.writer.GFF3Gene.class - [JAR]

├─ uk.ac.ebi.embl.gff3.writer.GFF3Show.class - [JAR]

├─ uk.ac.ebi.embl.gff3.writer.GFF3Writer.class - [JAR]

org.apache.commons.collections.keyvalue

├─ org.apache.commons.collections.keyvalue.AbstractKeyValue.class - [JAR]

├─ org.apache.commons.collections.keyvalue.AbstractMapEntry.class - [JAR]

├─ org.apache.commons.collections.keyvalue.AbstractMapEntryDecorator.class - [JAR]

├─ org.apache.commons.collections.keyvalue.DefaultKeyValue.class - [JAR]

├─ org.apache.commons.collections.keyvalue.DefaultMapEntry.class - [JAR]

├─ org.apache.commons.collections.keyvalue.MultiKey.class - [JAR]

├─ org.apache.commons.collections.keyvalue.TiedMapEntry.class - [JAR]

├─ org.apache.commons.collections.keyvalue.UnmodifiableMapEntry.class - [JAR]

uk.ac.ebi.embl.api.validation.dao

├─ uk.ac.ebi.embl.api.validation.dao.EntryDAOUtils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.dao.EntryDAOUtilsImpl.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.dao.EraproDAOUtils.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.dao.EraproDAOUtilsImpl.class - [JAR]

org.apache.commons.compress.utils

├─ org.apache.commons.compress.utils.ArchiveUtils.class - [JAR]

├─ org.apache.commons.compress.utils.BitInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.BoundedInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CRC32VerifyingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CharsetNames.class - [JAR]

├─ org.apache.commons.compress.utils.Charsets.class - [JAR]

├─ org.apache.commons.compress.utils.ChecksumVerifyingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CountingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CountingOutputStream.class - [JAR]

├─ org.apache.commons.compress.utils.IOUtils.class - [JAR]

org.apache.commons.collections.collection

├─ org.apache.commons.collections.collection.AbstractCollectionDecorator.class - [JAR]

├─ org.apache.commons.collections.collection.AbstractSerializableCollectionDecorator.class - [JAR]

├─ org.apache.commons.collections.collection.CompositeCollection.class - [JAR]

├─ org.apache.commons.collections.collection.PredicatedCollection.class - [JAR]

├─ org.apache.commons.collections.collection.SynchronizedCollection.class - [JAR]

├─ org.apache.commons.collections.collection.TransformedCollection.class - [JAR]

├─ org.apache.commons.collections.collection.TypedCollection.class - [JAR]

├─ org.apache.commons.collections.collection.UnmodifiableBoundedCollection.class - [JAR]

├─ org.apache.commons.collections.collection.UnmodifiableCollection.class - [JAR]

org.apache.commons.compress.compressors

├─ org.apache.commons.compress.compressors.CompressorException.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorStreamFactory.class - [JAR]

├─ org.apache.commons.compress.compressors.FileNameUtil.class - [JAR]

org.apache.log4j.jdbc

├─ org.apache.log4j.jdbc.JDBCAppender.class - [JAR]

org.apache.commons.collections.comparators

├─ org.apache.commons.collections.comparators.BooleanComparator.class - [JAR]

├─ org.apache.commons.collections.comparators.ComparableComparator.class - [JAR]

├─ org.apache.commons.collections.comparators.ComparatorChain.class - [JAR]

├─ org.apache.commons.collections.comparators.FixedOrderComparator.class - [JAR]

├─ org.apache.commons.collections.comparators.NullComparator.class - [JAR]

├─ org.apache.commons.collections.comparators.ReverseComparator.class - [JAR]

├─ org.apache.commons.collections.comparators.TransformingComparator.class - [JAR]

org.apache.commons.compress.compressors.pack200

├─ org.apache.commons.compress.compressors.pack200.InMemoryCachingStreamBridge.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200Strategy.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200Utils.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.StreamBridge.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.TempFileCachingStreamBridge.class - [JAR]

org.apache.commons.compress.archivers.tar

├─ org.apache.commons.compress.archivers.tar.TarArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveSparseEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarUtils.class - [JAR]

org.apache.commons.collections.bag

├─ org.apache.commons.collections.bag.AbstractBagDecorator.class - [JAR]

├─ org.apache.commons.collections.bag.AbstractMapBag.class - [JAR]

├─ org.apache.commons.collections.bag.AbstractSortedBagDecorator.class - [JAR]

├─ org.apache.commons.collections.bag.HashBag.class - [JAR]

├─ org.apache.commons.collections.bag.PredicatedBag.class - [JAR]

├─ org.apache.commons.collections.bag.PredicatedSortedBag.class - [JAR]

├─ org.apache.commons.collections.bag.SynchronizedBag.class - [JAR]

├─ org.apache.commons.collections.bag.SynchronizedSortedBag.class - [JAR]

├─ org.apache.commons.collections.bag.TransformedBag.class - [JAR]

├─ org.apache.commons.collections.bag.TransformedSortedBag.class - [JAR]

├─ org.apache.commons.collections.bag.TreeBag.class - [JAR]

├─ org.apache.commons.collections.bag.TypedBag.class - [JAR]

├─ org.apache.commons.collections.bag.TypedSortedBag.class - [JAR]

├─ org.apache.commons.collections.bag.UnmodifiableBag.class - [JAR]

├─ org.apache.commons.collections.bag.UnmodifiableSortedBag.class - [JAR]

uk.ac.ebi.embl.api.entry

├─ uk.ac.ebi.embl.api.entry.AgpRow.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.Assembly.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.ContigSequenceInfo.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.Entry.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.EntryFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.MasterEntryInfo.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.Text.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.XRef.class - [JAR]

uk.ac.ebi.embl.api.validation.fixer.sequence

├─ uk.ac.ebi.embl.api.validation.fixer.sequence.AnnotationOnlySequenceFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sequence.ContigstosequenceFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sequence.Mol_typeFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sequence.SequenceBasesFix.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.fixer.sequence.SequenceToGapFeatureBasesFix.class - [JAR]

org.apache.commons.compress.compressors.bzip2

├─ org.apache.commons.compress.compressors.bzip2.BZip2CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BZip2CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BZip2Constants.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BZip2Utils.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BlockSort.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.CRC.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.Rand.class - [JAR]

uk.ac.ebi.embl.api

├─ uk.ac.ebi.embl.api.EntityExistsException.class - [JAR]

├─ uk.ac.ebi.embl.api.EntityNotFoundException.class - [JAR]

├─ uk.ac.ebi.embl.api.RepositoryException.class - [JAR]

org.apache.commons.compress.archivers

├─ org.apache.commons.compress.archivers.ArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveException.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveStreamFactory.class - [JAR]

├─ org.apache.commons.compress.archivers.Lister.class - [JAR]

├─ org.apache.commons.compress.archivers.StreamingNotSupportedException.class - [JAR]

org.apache.log4j.xml

├─ org.apache.log4j.xml.DOMConfigurator.class - [JAR]

├─ org.apache.log4j.xml.Log4jEntityResolver.class - [JAR]

├─ org.apache.log4j.xml.SAXErrorHandler.class - [JAR]

├─ org.apache.log4j.xml.UnrecognizedElementHandler.class - [JAR]

├─ org.apache.log4j.xml.XMLLayout.class - [JAR]

├─ org.apache.log4j.xml.XMLWatchdog.class - [JAR]

org.apache.commons.lang.time

├─ org.apache.commons.lang.time.DateFormatUtils.class - [JAR]

├─ org.apache.commons.lang.time.DateUtils.class - [JAR]

├─ org.apache.commons.lang.time.DurationFormatUtils.class - [JAR]

├─ org.apache.commons.lang.time.FastDateFormat.class - [JAR]

├─ org.apache.commons.lang.time.StopWatch.class - [JAR]

uk.ac.ebi.embl.api.validation.check.gff3

├─ uk.ac.ebi.embl.api.validation.check.gff3.AttributeCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.gff3.GFF3ValidationCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.gff3.StartEndCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.gff3.TypeCheck.class - [JAR]

org.apache.commons.lang3.text

├─ org.apache.commons.lang3.text.CompositeFormat.class - [JAR]

├─ org.apache.commons.lang3.text.ExtendedMessageFormat.class - [JAR]

├─ org.apache.commons.lang3.text.FormatFactory.class - [JAR]

├─ org.apache.commons.lang3.text.FormattableUtils.class - [JAR]

├─ org.apache.commons.lang3.text.StrBuilder.class - [JAR]

├─ org.apache.commons.lang3.text.StrLookup.class - [JAR]

├─ org.apache.commons.lang3.text.StrMatcher.class - [JAR]

├─ org.apache.commons.lang3.text.StrSubstitutor.class - [JAR]

├─ org.apache.commons.lang3.text.StrTokenizer.class - [JAR]

├─ org.apache.commons.lang3.text.WordUtils.class - [JAR]

uk.ac.ebi.embl.flatfile.reader.embl

├─ uk.ac.ebi.embl.flatfile.reader.embl.ACReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.ACStarReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.AHReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.ASReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.CCReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.COReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.DEReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.DRReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.DTReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblArticleIssueMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblArticleMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblBookMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblEntryReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblLineReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblPatentMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblPersonMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.EmblReferenceLocationMatcher.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.FHReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.IDReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.KWReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.MasterCONReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.MasterTPAReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.MasterTSAReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.MasterWGSReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.OCReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.OGReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.OSReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.OXReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.PAReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.PRReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RAReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RCReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RGReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RLReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RNReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RPReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RTReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.RXReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.SQReader.class - [JAR]

├─ uk.ac.ebi.embl.flatfile.reader.embl.STStarReader.class - [JAR]

org.apache.log4j.lf5.util

├─ org.apache.log4j.lf5.util.AdapterLogRecord.class - [JAR]

├─ org.apache.log4j.lf5.util.DateFormatManager.class - [JAR]

├─ org.apache.log4j.lf5.util.LogFileParser.class - [JAR]

├─ org.apache.log4j.lf5.util.LogMonitorAdapter.class - [JAR]

├─ org.apache.log4j.lf5.util.Resource.class - [JAR]

├─ org.apache.log4j.lf5.util.ResourceUtils.class - [JAR]

├─ org.apache.log4j.lf5.util.StreamUtils.class - [JAR]

org.apache.commons.compress.archivers.dump

├─ org.apache.commons.compress.archivers.dump.Dirent.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveSummary.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveUtil.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.InvalidFormatException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.ShortFileException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.TapeInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.UnrecognizedFormatException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.UnsupportedCompressionAlgorithmException.class - [JAR]

uk.ac.ebi.embl.api.entry.genomeassembly

├─ uk.ac.ebi.embl.api.entry.genomeassembly.AssemblyInfoEntry.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.genomeassembly.ChromosomeEntry.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.genomeassembly.GCSEntry.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.genomeassembly.UnlocalisedEntry.class - [JAR]

org.apache.log4j.lf5.viewer

├─ org.apache.log4j.lf5.viewer.FilteredLogTableModel.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LF5SwingUtils.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogBrokerMonitor.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogFactor5Dialog.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogFactor5ErrorDialog.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogFactor5InputDialog.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogFactor5LoadingDialog.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogTable.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogTableColumn.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogTableColumnFormatException.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogTableModel.class - [JAR]

├─ org.apache.log4j.lf5.viewer.LogTableRowRenderer.class - [JAR]

├─ org.apache.log4j.lf5.viewer.TrackingAdjustmentListener.class - [JAR]

uk.ac.ebi.embl.api.validation.check.sourcefeature

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.ChromosomeSourceQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.HostQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.MoleculeTypeAndOrganismCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.MoleculeTypeAndSourceQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.OrganismAndRequiredQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.SequenceCoverageCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.SourceFeatureOnlyCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.SourceFeatureQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.SourceQualifierPatternAndFeatureCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.TaxonomicDivisionQualifierCheck.class - [JAR]

├─ uk.ac.ebi.embl.api.validation.check.sourcefeature.Type_materialQualifierCheck.class - [JAR]

org.apache.commons.lang3

├─ org.apache.commons.lang3.AnnotationUtils.class - [JAR]

├─ org.apache.commons.lang3.ArrayUtils.class - [JAR]

├─ org.apache.commons.lang3.BitField.class - [JAR]

├─ org.apache.commons.lang3.BooleanUtils.class - [JAR]

├─ org.apache.commons.lang3.CharEncoding.class - [JAR]

├─ org.apache.commons.lang3.CharRange.class - [JAR]

├─ org.apache.commons.lang3.CharSequenceUtils.class - [JAR]

├─ org.apache.commons.lang3.CharSet.class - [JAR]

├─ org.apache.commons.lang3.CharSetUtils.class - [JAR]

├─ org.apache.commons.lang3.CharUtils.class - [JAR]

├─ org.apache.commons.lang3.ClassUtils.class - [JAR]

├─ org.apache.commons.lang3.EnumUtils.class - [JAR]

├─ org.apache.commons.lang3.JavaVersion.class - [JAR]

├─ org.apache.commons.lang3.LocaleUtils.class - [JAR]

├─ org.apache.commons.lang3.ObjectUtils.class - [JAR]

├─ org.apache.commons.lang3.RandomStringUtils.class - [JAR]

├─ org.apache.commons.lang3.Range.class - [JAR]

├─ org.apache.commons.lang3.SerializationException.class - [JAR]

├─ org.apache.commons.lang3.SerializationUtils.class - [JAR]

├─ org.apache.commons.lang3.StringEscapeUtils.class - [JAR]

├─ org.apache.commons.lang3.StringUtils.class - [JAR]

├─ org.apache.commons.lang3.SystemUtils.class - [JAR]

├─ org.apache.commons.lang3.Validate.class - [JAR]

uk.ac.ebi.embl.api.entry.feature

├─ uk.ac.ebi.embl.api.entry.feature.CdsFeature.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.feature.Feature.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.feature.FeatureFactory.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.feature.PeptideFeature.class - [JAR]

├─ uk.ac.ebi.embl.api.entry.feature.SourceFeature.class - [JAR]

org.apache.commons.compress.compressors.snappy

├─ org.apache.commons.compress.compressors.snappy.FramedSnappyCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.PureJavaCrc32C.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.SnappyCompressorInputStream.class - [JAR]

org.apache.log4j.or.jms

├─ org.apache.log4j.or.jms.MessageRenderer.class - [JAR]

org.apache.log4j.rewrite

├─ org.apache.log4j.rewrite.MapRewritePolicy.class - [JAR]

├─ org.apache.log4j.rewrite.PropertyRewritePolicy.class - [JAR]

├─ org.apache.log4j.rewrite.ReflectionRewritePolicy.class - [JAR]

├─ org.apache.log4j.rewrite.RewriteAppender.class - [JAR]

├─ org.apache.log4j.rewrite.RewritePolicy.class - [JAR]

uk.ac.ebi.embl.api.checksum

├─ uk.ac.ebi.embl.api.checksum.CRC32.class - [JAR]

├─ uk.ac.ebi.embl.api.checksum.MD5Checksum.class - [JAR]

org.apache.commons.collections.iterators

├─ org.apache.commons.collections.iterators.AbstractEmptyIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.AbstractIteratorDecorator.class - [JAR]

├─ org.apache.commons.collections.iterators.AbstractListIteratorDecorator.class - [JAR]

├─ org.apache.commons.collections.iterators.AbstractMapIteratorDecorator.class - [JAR]

├─ org.apache.commons.collections.iterators.AbstractOrderedMapIteratorDecorator.class - [JAR]

├─ org.apache.commons.collections.iterators.ArrayIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ArrayListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.CollatingIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EmptyIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EmptyListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EmptyMapIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EmptyOrderedIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EmptyOrderedMapIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EntrySetMapIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.EnumerationIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.FilterIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.FilterListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.IteratorChain.class - [JAR]

├─ org.apache.commons.collections.iterators.IteratorEnumeration.class - [JAR]

├─ org.apache.commons.collections.iterators.ListIteratorWrapper.class - [JAR]

├─ org.apache.commons.collections.iterators.LoopingIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.LoopingListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ObjectArrayIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ObjectArrayListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ObjectGraphIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ProxyIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ProxyListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.ReverseListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.SingletonIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.SingletonListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.TransformIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.UniqueFilterIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.UnmodifiableIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.UnmodifiableListIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.UnmodifiableMapIterator.class - [JAR]

├─ org.apache.commons.collections.iterators.UnmodifiableOrderedMapIterator.class - [JAR]

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