View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window cramtools-3.0.187.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
net.sf.cram.mask
├─ net.sf.cram.mask.ArrayPositionMask.class - [JAR]
├─ net.sf.cram.mask.DefaultReadMaskFactory.class - [JAR]
├─ net.sf.cram.mask.FastaByteArrayMaskFactory.class - [JAR]
├─ net.sf.cram.mask.IntegerListMaskFactory.class - [JAR]
├─ net.sf.cram.mask.PositionMask.class - [JAR]
├─ net.sf.cram.mask.ReadMaskException.class - [JAR]
├─ net.sf.cram.mask.ReadMaskFactory.class - [JAR]
├─ net.sf.cram.mask.ReadMaskFormatException.class - [JAR]
├─ net.sf.cram.mask.ReadMaskReader.class - [JAR]
├─ net.sf.cram.mask.RefMaskUtils.class - [JAR]
├─ net.sf.cram.mask.SingleLineMaskReader.class - [JAR]
net.sf.cram.select
├─ net.sf.cram.select.BoundSAMRecordIterator.class - [JAR]
├─ net.sf.cram.select.Dibify.class - [JAR]
├─ net.sf.cram.select.FIELD_TYPE.class - [JAR]
├─ net.sf.cram.select.SAMFieldSelector.class - [JAR]
├─ net.sf.cram.select.SAMRecordField.class - [JAR]
├─ net.sf.cram.select.SamRecordComparision.class - [JAR]
htsjdk.samtools.cram.paralell
├─ htsjdk.samtools.cram.paralell.BamToCram.class - [JAR]
├─ htsjdk.samtools.cram.paralell.BamToCram_OBA_Function.class - [JAR]
├─ htsjdk.samtools.cram.paralell.Bam_OBA_Supplier.class - [JAR]
├─ htsjdk.samtools.cram.paralell.ConsumerJob.class - [JAR]
├─ htsjdk.samtools.cram.paralell.Conveyer.class - [JAR]
├─ htsjdk.samtools.cram.paralell.CramContainer_OBA_Supplier.class - [JAR]
├─ htsjdk.samtools.cram.paralell.CramToBam.class - [JAR]
├─ htsjdk.samtools.cram.paralell.CramToBam_OBA_Function.class - [JAR]
├─ htsjdk.samtools.cram.paralell.IOrder.class - [JAR]
├─ htsjdk.samtools.cram.paralell.Job.class - [JAR]
├─ htsjdk.samtools.cram.paralell.OBAWriteConsumer.class - [JAR]
├─ htsjdk.samtools.cram.paralell.OrderedByteArray.class - [JAR]
├─ htsjdk.samtools.cram.paralell.OrderingConveyer.class - [JAR]
├─ htsjdk.samtools.cram.paralell.SAMFileHeader_Utils.class - [JAR]
├─ htsjdk.samtools.cram.paralell.StreamPump.class - [JAR]
├─ htsjdk.samtools.cram.paralell.SupplierJob.class - [JAR]
├─ htsjdk.samtools.cram.paralell.TransformerJob.class - [JAR]
net.sf.cram.cg
├─ net.sf.cram.cg.CigEl.class - [JAR]
├─ net.sf.cram.cg.DedupIterator.class - [JAR]
├─ net.sf.cram.cg.Evidence2SAM.class - [JAR]
├─ net.sf.cram.cg.EvidenceRecord.class - [JAR]
├─ net.sf.cram.cg.EvidenceRecordFileIterator.class - [JAR]
├─ net.sf.cram.cg.Read.class - [JAR]
├─ net.sf.cram.cg.Splitter.class - [JAR]
├─ net.sf.cram.cg.Utils.class - [JAR]
net.sf.cram
├─ net.sf.cram.AlignmentSliceQuery.class - [JAR]
├─ net.sf.cram.AlignmentsTags.class - [JAR]
├─ net.sf.cram.Bam2Cram.class - [JAR]
├─ net.sf.cram.Cram2Bam.class - [JAR]
├─ net.sf.cram.Cram2Fastq.class - [JAR]
├─ net.sf.cram.CramFixHeader.class - [JAR]
├─ net.sf.cram.CramProf.class - [JAR]
├─ net.sf.cram.CramTools.class - [JAR]
├─ net.sf.cram.Crambone.class - [JAR]
├─ net.sf.cram.DecomposeBAM.class - [JAR]
├─ net.sf.cram.DetectFeatureB.class - [JAR]
├─ net.sf.cram.DetectMultiref.class - [JAR]
├─ net.sf.cram.DownloadReferences.class - [JAR]
├─ net.sf.cram.FastqSAMFileWriter.class - [JAR]
├─ net.sf.cram.FixBAMFileHeader.class - [JAR]
├─ net.sf.cram.Merge.class - [JAR]
├─ net.sf.cram.QualityScoreStats.class - [JAR]
├─ net.sf.cram.ReadNotFoundException.class - [JAR]
├─ net.sf.cram.RefRepo.class - [JAR]
├─ net.sf.cram.Refless.class - [JAR]
├─ net.sf.cram.Transcode.class - [JAR]
├─ net.sf.cram.ValidateCramFile.class - [JAR]
htsjdk.samtools.cram.lossy
├─ htsjdk.samtools.cram.lossy.Binning.class - [JAR]
├─ htsjdk.samtools.cram.lossy.QualityScorePreservation.class - [JAR]
cipheronly
├─ cipheronly.CipherInputStream_256.class - [JAR]
├─ cipheronly.CipherOnly.class - [JAR]
├─ cipheronly.CipherOutputStream_256.class - [JAR]
├─ cipheronly.CipherStream_256.class - [JAR]
├─ cipheronly.Cipher_256.class - [JAR]
├─ cipheronly.Glue.class - [JAR]
├─ cipheronly.SeekableCipherStream_256.class - [JAR]
htsjdk.samtools.cram.encoding.reader
├─ htsjdk.samtools.cram.encoding.reader.AbstractFastqReader.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.BAMNameCollate.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.BAMRead.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.BAMRecordView.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.BamFlags.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.CramFlags.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.FastqNameCollate.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.FastqRead.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.FastqReader.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.FastqView.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.MultiFastqOutputter.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.NameCollate.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.ReadFeatureBuffer.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.ReaderToBAM.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.ReaderToFasta.class - [JAR]
├─ htsjdk.samtools.cram.encoding.reader.ReaderToFastq.class - [JAR]
net.sf.cram.fasta
├─ net.sf.cram.fasta.BGZF_FastaIndexer.class - [JAR]
├─ net.sf.cram.fasta.BGZF_ReferenceSequenceFile.class - [JAR]
├─ net.sf.cram.fasta.FAIDX_FastaIndexEntry.class - [JAR]
htsjdk.samtools.cram.ref
├─ htsjdk.samtools.cram.ref.ReferenceTracks.class - [JAR]
net.sf.cram.index
├─ net.sf.cram.index.BAMQueryFilteringIterator.class - [JAR]
├─ net.sf.cram.index.BaiIndexer.class - [JAR]
├─ net.sf.cram.index.CraiIndexer.class - [JAR]
├─ net.sf.cram.index.CramIndex.class - [JAR]
├─ net.sf.cram.index.CramIndexer.class - [JAR]
net.sf.cram.common
├─ net.sf.cram.common.Utils.class - [JAR]
htsjdk.samtools.cram.build
├─ htsjdk.samtools.cram.build.CramNormalizer.class - [JAR]
htsjdk.samtools
├─ htsjdk.samtools.API.class - [JAR]
├─ htsjdk.samtools.BAMIndexFactory.class - [JAR]
├─ htsjdk.samtools.CRAMContainerAsynchWriter.class - [JAR]
├─ htsjdk.samtools.CRAMContainerStreamWriter.class - [JAR]
├─ htsjdk.samtools.CRAMFileWriter.class - [JAR]
├─ htsjdk.samtools.FileFormat.class - [JAR]
├─ htsjdk.samtools.IndexAggregate.class - [JAR]
├─ htsjdk.samtools.IndexFormat.class - [JAR]
├─ htsjdk.samtools.ReferenceRange.class - [JAR]
htsjdk.samtools.cram
├─ htsjdk.samtools.cram.CramContext.class - [JAR]
├─ htsjdk.samtools.cram.CramLossyOptions.class - [JAR]
├─ htsjdk.samtools.cram.CramSerilization.class - [JAR]
htsjdk.samtools.cram.structure
├─ htsjdk.samtools.cram.structure.SliceIO_Accessor.class - [JAR]
net.sf.cram.ref
├─ net.sf.cram.ref.InMemoryReferenceSequenceFile.class - [JAR]
├─ net.sf.cram.ref.PathPattern.class - [JAR]
├─ net.sf.cram.ref.ReferenceRegion.class - [JAR]
├─ net.sf.cram.ref.ReferenceSequenceFromSeekable.class - [JAR]
├─ net.sf.cram.ref.ReferenceSource.class - [JAR]
