View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window core-1.0.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
uk.ac.uea.cmp.spectre.core.io.qweight
├─ uk.ac.uea.cmp.spectre.core.io.qweight.QWeightFileFilter.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.qweight.QWeightReader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.qweight.QWeightWriter.class - [JAR]
uk.ac.uea.cmp.spectre.core.math.stats
├─ uk.ac.uea.cmp.spectre.core.math.stats.Experiment.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.math.stats.ExperimentDescription.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.math.stats.Report.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.math.stats.Result.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.math.stats.Statistics.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split.flat
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.NeighbourSeparator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.NeighbourSeparatorMax.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.Neighbours.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.PermutationSequence.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.PermutationSequenceFactory.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.Scorer.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.flat.Utilities.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.network.draw
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.AngleCalculator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.AngleCalculatorEqualAngles.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.AngleCalculatorMaximalArea.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.AngleCalculatorSimple.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.BoxOpener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.Collector.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.CompatibleCorrector.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.DrawSplitSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.Leader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.NetworkBox.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.PermutationSequenceDraw.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.Shape.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.SplitSystemDraw.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.Translocator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.draw.ViewerConfig.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.emboss
├─ uk.ac.uea.cmp.spectre.core.io.emboss.EmbossReader.class - [JAR]
uk.ac.uea.cmp.spectre.core.math.matrix
├─ uk.ac.uea.cmp.spectre.core.math.matrix.BitMatrix.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.math.matrix.SymmetricMatrix.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.math.matrix.UpperTriangularMatrix.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.quad
├─ uk.ac.uea.cmp.spectre.core.ds.quad.Quad.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.SpectreQuad.class - [JAR]
uk.ac.uea.cmp.spectre.core.io
├─ uk.ac.uea.cmp.spectre.core.io.AbstractSpectreReader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.AbstractSpectreWriter.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.SpectreDataType.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.SpectreReader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.SpectreReaderFactory.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.SpectreWriter.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.SpectreWriterFactory.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.AbstractNexusLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.AbstractQLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.NexusDistancesLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.NexusQuartetLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.NexusSplitsLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.QLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.QLoaderFactory.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.QWeightLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.ScriptLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.TreeFileLoader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.load.TreeLoader.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.CVMatrices.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.CircularNNLS.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.CircularOrderingAlgorithms.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.CircularOrderingCreator.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.EdgeHandling.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.EqualWeighting.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.GreedyMEWeighting.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.ParabolaWeighting.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.SummedDistanceList.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.TSPWeighting.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.TreeWeighting.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.Weighting.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.weighting.Weightings.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.newick
├─ uk.ac.uea.cmp.spectre.core.io.newick.NewickReader.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.tree.newick.parser
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.parser.NewickTreeBaseListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.parser.NewickTreeLexer.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.parser.NewickTreeListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.parser.NewickTreeParser.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.parser.NewickTreePopulator.class - [JAR]
uk.ac.uea.cmp.spectre.core.ui.cli
├─ uk.ac.uea.cmp.spectre.core.ui.cli.CommandLineHelper.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds
├─ uk.ac.uea.cmp.spectre.core.ds.Identifier.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.IdentifierList.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.Locations.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.Sequences.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.fasta
├─ uk.ac.uea.cmp.spectre.core.io.fasta.FastaReader.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.quad.quartet
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.CanonicalWeightedQuartetMap.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.GroupedQuartetSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.QuartetSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.QuartetSystemCombiner.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.QuartetSystemList.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.QuartetUtils.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.QuartetWeights.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quartet.WeightedQuartetGroupMap.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.quad.quadruple
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.AlignmentFilter.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.AlignmentFilterDistanceMatrix.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.QSFactory.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.QSFactoryAlignment.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.QSFactoryLocation.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.QSFactorySplitSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.Quadruple.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.QuadrupleSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.quad.quadruple.SplitsEstimator.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.network
├─ uk.ac.uea.cmp.spectre.core.ds.network.Edge.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.EdgeList.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.Network.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.NetworkLabel.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.SpectreNetwork.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.Vertex.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.network.VertexList.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.tree.newick
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.NewickNode.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.NewickSubTree.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.newick.NewickTree.class - [JAR]
uk.ac.uea.cmp.spectre.core.math.tuple
├─ uk.ac.uea.cmp.spectre.core.math.tuple.Triplet.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.qweight.parser
├─ uk.ac.uea.cmp.spectre.core.io.qweight.parser.QWeightBaseListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.qweight.parser.QWeightLexer.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.qweight.parser.QWeightListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.qweight.parser.QWeightParser.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.qweight.parser.QWeightPopulator.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.phylip
├─ uk.ac.uea.cmp.spectre.core.io.phylip.PhylipReader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.phylip.PhylipWriter.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.distance
├─ uk.ac.uea.cmp.spectre.core.ds.distance.AbstractDistanceMatrix.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.AbstractDistanceMatrixCalculator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.DistanceCalculatorFactory.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.DistanceList.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.DistanceMatrix.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.DistanceMatrixBuilder.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.DistanceMatrixCalculator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.DistanceMatrixGenerator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.FlexibleDistanceList.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.FlexibleDistanceMatrix.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.HammingDistanceCalculator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.JukesCantorCalculator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.K80Calculator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.MetricDistanceGenerator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.distance.RandomDistanceGenerator.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.nexus
├─ uk.ac.uea.cmp.spectre.core.io.nexus.Nexus.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.NexusFileFilter.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.NexusReader.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.NexusWriter.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.tree
├─ uk.ac.uea.cmp.spectre.core.ds.tree.BinaryTree.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.InnerNode.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.Leaf.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.tree.Node.class - [JAR]
uk.ac.uea.cmp.spectre.core.io.nexus.parser
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusCharacterBuilder.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusFileBaseListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusFileLexer.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusFileListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusFileParser.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusFilePopulator.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusLocationBuilder.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusNetworkBuilder.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusQuadruplesBuilder.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusQuartetSystemBuilder.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.io.nexus.parser.NexusSplitSystemBuilder.class - [JAR]
uk.ac.uea.cmp.spectre.core.ui.gui.geom
├─ uk.ac.uea.cmp.spectre.core.ui.gui.geom.ColoredLine.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.geom.IndexedPoint.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.geom.Leaders.class - [JAR]
uk.ac.uea.cmp.spectre.core.math
├─ uk.ac.uea.cmp.spectre.core.math.Equality.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split
├─ uk.ac.uea.cmp.spectre.core.ds.split.SpectreSplit.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SpectreSplitBlock.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SpectreSplitSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.Split.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SplitBlock.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SplitDistanceMap.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SplitSystem.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SplitUtils.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.SplitWeights.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.TreeSplitWeights.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split.circular
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.CircularOrdering.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nn
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nn.NeighborNetImpl.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nn.NeighborNetParams.class - [JAR]
uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm
├─ uk.ac.uea.cmp.spectre.core.ds.split.circular.ordering.nm.NetMakeCircularOrderer.class - [JAR]
uk.ac.uea.cmp.spectre.core.util
├─ uk.ac.uea.cmp.spectre.core.util.CollectionUtils.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.DefaultParsingErrorListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.DefaultParsingErrorStrategy.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.LogConfig.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.ProjectProperties.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.Service.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.SpiFactory.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.StringJoiner.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.StringUtils.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.util.Time.class - [JAR]
uk.ac.uea.cmp.spectre.core.ui.gui
├─ uk.ac.uea.cmp.spectre.core.ui.gui.JobController.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.JobControllerWithView.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.LookAndFeel.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.RunnableTool.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.StatusTracker.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.StatusTrackerWithView.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.ThreadCompleteListener.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.ToolHost.class - [JAR]
├─ uk.ac.uea.cmp.spectre.core.ui.gui.ToolRunner.class - [JAR]
