Group: de.julielab - All Dependencies

JCoRe Type System · The JCoRe type system.

JCoRe Utilities · Utilities for UIMA compliant components.

JCoRe Descriptor Creator · A simple project for the automatic creation of descriptors for UIMAfit-enabled components.

JULIE XML Tools · Reads XML using the VTD parser.

Corpus Storage System · A utility for managing documents stored in a PostgreSQL database. The documents are imported into a PostgreSQL DB as full texts with the goal to be able to retrieve the documents by their PubMedID efficiently. For more sophisticated tasks, a user configuration file can be delivered which can take control of the table schema to use, the PostgreSQL schema to use and the actual database server to connect to as well as the concrete database.

JCoRe Mallet 2.0.9 · MALLET is a Java-based package for statistical natural language processing, document classification, clustering, topic modeling, information extraction, and other machine learning applications to text.

LingPipe, Alias-i · This is the original Lingpipe: http://alias-i.com/lingpipe/web/download.html There is one small change in the JaccardDistance class.

JCoRe XMI Splitter Tools · Parses CAS data in XMI format in order to select specified annotations (XmiSplitter) or or builds a single XMI representation out of the base document and the selected annotations (XmiBuilder). These tools are used by the JCoRe CAS to/from DB Reader/Consumer to store or read portions of XMI files from a PostgrSQL database.

JULIE Lab Concept Database Manager Core · The central interfaces and services for the concept database manager.

JCoRe XML Mapper · A generic XML mapper to create CAS instances reflecting contents of XML documents. Especially created to read PubMed/Medline XML.

JCoRe OpenNLP Sentence Splitter · UIMA wrapper for the OpenNLP Sentence Segmentation. The difference to the official OpenNLP UIMA wrapper is basically the type system. In this project the JCoRe type system is employed and is thus compatible to other JCoRe components.

JCoRe OpenNLP POS Tagger · UIMA wrapper for the OpenNLP POS Tagger. The difference to the official OpenNLP UIMA wrapper is basically the type system. In this project the JCoRe type system is employed and is thus compatible to other JCoRe components.

JCoRe BioSem Event Annotator · A UIMA wrapper around the BioSem Event Extractor from the University of Amsterdam. http://www.ncbi.nlm.nih.gov/pubmed/22859502

JULIE Lab Neo4j Server Plugin Utilities · This project contains various utilities used for the Neo4j server plugins developed at the JULIE lab.

JCoRe XML Database Reader · A Collection Reader that converts XML, stored in a database, to CAS objects. The conversion is the same employed by the jcore-xml-reader, making use of the jcore-xml-mapper. The reader requires a configuration file which determines the database connection, the table schema and the PostgreSQL schema (namespace) to use.

JCoRe Database Reader · Abstract database reader for database driven processing

UEA Stemmer · UEA Stemmer

SegmentationEvaluator · Evaluation package for IOB based annotations.

JCoRe XML Reader · A Collection Reader that employs the JCoRe XML mapper to read XML documents. A mapping file must be delivered to determine which XML file elements have to be converted to which CAS annotation types and features. This is the base component for the JCoRe PubMed and Medline readers.