Group: de.julielab - All Dependencies

JCoRe Stanford Lemmatizer · UIMA Wrapper for the Stanford CoreNLP Lemmatizer.

JCoRe Parent POM · The Parent POM for all JCoRe projects and dependencies.

JCoRe MUC7 Reader · JCoRe MUC7 Reader. A Collection Reader that converts MUC-7 files to CAS objects (only corefs).

JCoRe IEXML Reader · Reader for IEXML files as used in the Mantra project/challenge

JCoRe IEXML Consumer · Generates stand-off IEXML files as used in the Mantra challenge.

JCoRe Dependencies · The POM for the JCoRe Dependencies projects.

JCoRe Coordination Tagger Baseline · This is a baseline approach to the Coordination Resolution problem. It is used in our jcore-coordination-ae, that is only accessible on GitHub due to being in an unfinished state.

JCoRe CAS to IOB Consumer · A CAS Consumer that converts UIMA annotations into IOB format

JCoRe Base · The POM for the JCoRe Base projects.

JCoRe Acronym Tagger · Arconym Tagger based on the SCHWARTZ & HEARST Algorithm: Ariel S. Schwartz and Marti A. Hearst: A Simple Algorithm For Identifying Abbreviation Definitions in Biomedical Text. In: Pacific Symposium on Biocomputing, 2003.

JCoRe ACE Reader · JCoRe ACE Reader. A Collection Reader that converts ACE-XML files to CAS objects.

JCoRe Projects · The POM for the JCoRe Projects.

JCoRe OpenNLP Token AE, Biomedical English · This project employes the JCoRe OpenNLP tokenizer wrapper with a model trained on the PennBioIE corpus and data from MedLine abstracts.

JCoRe OpenNLP Sentence Splitter BioMed English · model for the sentence splitter, trained on PennBio and Genia

JCoRe OpenNLP POS Tagger Penn BioIE · Wrapper for OpenNLP POS Tagger; with a model trained on the Penn BioIE corpus

JCoRe OpenNLP Chunker GENIA · model for the opennlp chunker, trained on Genia Treebank v1

JCoRe MST Parser AE, Biomedical English · This project employs the jcore-mstparser-ae (Dependency Parser) with a model trained on the GENIA corpus.

JCoRe Lingpipe Gazetteer Dummy Implementation · This is just a dummy implementation that can be adapted according to ones own need.

JCoRe JPOS AE, Medical German · This project employs the jcore-jpos-ae (Part-of-Speech Tagger) with a model trained on the confidential FraMed corpus.

JCoRe JNET AE, Biomedical English · This project employs the jcore-jnet-ae (Named Entity Tagger) with a model trained on the PennBioIE corpus.

JCoRe BioSem AE, BioNLP SharedTask 2011 · This project employs the JCoRe BioSem wrapper (jcore-biosem-ae) with a BioSem database trained on the BioNLP SharedTask 2011 train and development (that is, "mixed") data for biological event extraction.

JCoRe Medline Reader · Leveraging the JCoRe XML Reader, this project employs a Medline-enabled mapping file to map Medline XML documents to CAS instances. The input is a directory of single XML files, each containing exactly one XML MedlineCitation. The XML format is the one used by NCBI when downloading Medline documents in large batches from the NCBI FTP server. However, the component currently expects single documents instead of whole MedlineCitationSets containing sets of MedlineCitations.

JCoRe XMI Writer · JCoRe XMI Writer. A CAS consumer that writes/converts CAS objects to XMI files.

JCoRe Pipelines · The POM for JCoRe Pipelines