jar

bio.singa : singa-chemistry

Maven & Gradle

Sep 23, 2020
4 usages
6 stars

The chemistry package of SiNGA handles aspects that range into chemoinformatics, such as parsing and manipulation of chemical entities as well as their annotation with features.

Table Of Contents

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Version Vulnerabilities Size Updated
0.7.x
0.6.x
0.5.x
0.4.x

View Java Class Source Code in JAR file

  1. Download JD-GUI to open JAR file and explore Java source code file (.class .java)
  2. Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window singa-chemistry-0.7.0.jar file.
    Once you open a JAR file, all the java classes in the JAR file will be displayed.

bio.singa.chemistry.model

├─ bio.singa.chemistry.model.AbstractChemicalEntity.class - [JAR]

├─ bio.singa.chemistry.model.CovalentBondType.class - [JAR]

├─ bio.singa.chemistry.model.MoleculeAtom.class - [JAR]

├─ bio.singa.chemistry.model.MoleculeBond.class - [JAR]

├─ bio.singa.chemistry.model.MoleculeGraph.class - [JAR]

├─ bio.singa.chemistry.model.Protein.class - [JAR]

├─ bio.singa.chemistry.model.SmallMolecule.class - [JAR]

bio.singa.chemistry.features.databases.chebi

├─ bio.singa.chemistry.features.databases.chebi.ChEBIContentHandler.class - [JAR]

├─ bio.singa.chemistry.features.databases.chebi.ChEBIDatabase.class - [JAR]

├─ bio.singa.chemistry.features.databases.chebi.ChEBIImageService.class - [JAR]

├─ bio.singa.chemistry.features.databases.chebi.ChEBIParserService.class - [JAR]

bio.singa.chemistry.features

├─ bio.singa.chemistry.features.ChemistryFeatureContainer.class - [JAR]

├─ bio.singa.chemistry.features.FeatureProviderRegistry.class - [JAR]

bio.singa.chemistry.features.diffusivity

├─ bio.singa.chemistry.features.diffusivity.DiffusivityProvider.class - [JAR]

├─ bio.singa.chemistry.features.diffusivity.ModifiedDiffusivity.class - [JAR]

├─ bio.singa.chemistry.features.diffusivity.OriginalDiffusivity.class - [JAR]

├─ bio.singa.chemistry.features.diffusivity.SaffmanDelbrueckDiffusivityCorrelation.class - [JAR]

├─ bio.singa.chemistry.features.diffusivity.WilkeDiffusivityCorrelation.class - [JAR]

├─ bio.singa.chemistry.features.diffusivity.YoungDiffusivityCorrelation.class - [JAR]

bio.singa.chemistry.features.permeability

├─ bio.singa.chemistry.features.permeability.MembranePermeability.class - [JAR]

├─ bio.singa.chemistry.features.permeability.OsmoticPermeability.class - [JAR]

bio.singa.chemistry.annotations.taxonomy

├─ bio.singa.chemistry.annotations.taxonomy.Organism.class - [JAR]

├─ bio.singa.chemistry.annotations.taxonomy.Taxon.class - [JAR]

bio.singa.chemistry.features.identifiers

├─ bio.singa.chemistry.features.identifiers.ChEBIToInChIKey.class - [JAR]

├─ bio.singa.chemistry.features.identifiers.InChIKeyProvider.class - [JAR]

├─ bio.singa.chemistry.features.identifiers.PDBLigandIdentiferProvider.class - [JAR]

├─ bio.singa.chemistry.features.identifiers.PubChemIdentifierProvider.class - [JAR]

├─ bio.singa.chemistry.features.identifiers.PubChemToChEBI.class - [JAR]

├─ bio.singa.chemistry.features.identifiers.PubChemToInChIKey.class - [JAR]

bio.singa.chemistry.features.smiles

├─ bio.singa.chemistry.features.smiles.Smiles.class - [JAR]

├─ bio.singa.chemistry.features.smiles.SmilesGenerator.class - [JAR]

├─ bio.singa.chemistry.features.smiles.SmilesParser.class - [JAR]

├─ bio.singa.chemistry.features.smiles.SmilesProvider.class - [JAR]

bio.singa.chemistry.model.elements

├─ bio.singa.chemistry.model.elements.ElectronConfiguration.class - [JAR]

├─ bio.singa.chemistry.model.elements.Element.class - [JAR]

├─ bio.singa.chemistry.model.elements.ElementProvider.class - [JAR]

bio.singa.chemistry.features.molarmass

├─ bio.singa.chemistry.features.molarmass.MolarMassProvider.class - [JAR]

bio.singa.chemistry.features.radius

├─ bio.singa.chemistry.features.radius.Radius.class - [JAR]

bio.singa.chemistry.features.databases.uniprot

├─ bio.singa.chemistry.features.databases.uniprot.UniProtContentHandler.class - [JAR]

├─ bio.singa.chemistry.features.databases.uniprot.UniProtDatabase.class - [JAR]

├─ bio.singa.chemistry.features.databases.uniprot.UniProtParserService.class - [JAR]

bio.singa.chemistry.features.databases.unichem

├─ bio.singa.chemistry.features.databases.unichem.UniChemParser.class - [JAR]

bio.singa.chemistry.features.databases.pubchem

├─ bio.singa.chemistry.features.databases.pubchem.PubChemContentHandler.class - [JAR]

├─ bio.singa.chemistry.features.databases.pubchem.PubChemDatabase.class - [JAR]

├─ bio.singa.chemistry.features.databases.pubchem.PubChemParserService.class - [JAR]

bio.singa.chemistry.annotations

├─ bio.singa.chemistry.annotations.Annotatable.class - [JAR]

├─ bio.singa.chemistry.annotations.Annotation.class - [JAR]

├─ bio.singa.chemistry.annotations.AnnotationType.class - [JAR]

bio.singa.chemistry.features.reactions

├─ bio.singa.chemistry.features.reactions.BackwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.FirstOrderBackwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.FirstOrderForwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.FirstOrderRate.class - [JAR]

├─ bio.singa.chemistry.features.reactions.FirstOrderRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.ForwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.MichaelisConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.RateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.ReactionRate.class - [JAR]

├─ bio.singa.chemistry.features.reactions.SecondOrderBackwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.SecondOrderForwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.SecondOrderRate.class - [JAR]

├─ bio.singa.chemistry.features.reactions.SecondOrderRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.TurnoverNumber.class - [JAR]

├─ bio.singa.chemistry.features.reactions.ZeroOrderBackwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.ZeroOrderForwardsRateConstant.class - [JAR]

├─ bio.singa.chemistry.features.reactions.ZeroOrderRate.class - [JAR]

├─ bio.singa.chemistry.features.reactions.ZeroOrderRateConstant.class - [JAR]

bio.singa.chemistry.features.structure2d

├─ bio.singa.chemistry.features.structure2d.MolParser2D.class - [JAR]

├─ bio.singa.chemistry.features.structure2d.Structure2D.class - [JAR]

bio.singa.chemistry.features.databases.sequencevariants

├─ bio.singa.chemistry.features.databases.sequencevariants.SequenceVariant.class - [JAR]

├─ bio.singa.chemistry.features.databases.sequencevariants.SequenceVariants.class - [JAR]

bio.singa.chemistry.features.logp

├─ bio.singa.chemistry.features.logp.LogP.class - [JAR]

├─ bio.singa.chemistry.features.logp.LogPProvider.class - [JAR]

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