View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window singa-structure-0.7.0.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
bio.singa.structure.algorithms.superimposition.consensus
├─ bio.singa.structure.algorithms.superimposition.consensus.ConsensusAlignment.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.consensus.ConsensusBuilder.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.consensus.ConsensusContainer.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.consensus.ConsensusException.class - [JAR]
bio.singa.structure.algorithms.fragmentation
├─ bio.singa.structure.algorithms.fragmentation.RECAPFragmenter.class - [JAR]
bio.singa.structure.parser.pdb.structures.tokens
├─ bio.singa.structure.parser.pdb.structures.tokens.AtomToken.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.ChainTerminatorToken.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.HeaderToken.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.Justification.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.LeafSkeleton.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.ModelToken.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.PDBToken.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.TerminatorTokens.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.tokens.TitleToken.class - [JAR]
bio.singa.structure.parser.mol
├─ bio.singa.structure.parser.mol.MolParser.class - [JAR]
bio.singa.structure.parser.sifts
├─ bio.singa.structure.parser.sifts.PDBEnzymeMapper.class - [JAR]
├─ bio.singa.structure.parser.sifts.PDBPfamMapper.class - [JAR]
├─ bio.singa.structure.parser.sifts.PDBUniProtMapper.class - [JAR]
├─ bio.singa.structure.parser.sifts.ResidueMapContentHandler.class - [JAR]
├─ bio.singa.structure.parser.sifts.UniProtResidueMapParser.class - [JAR]
bio.singa.structure.parser.ncbi
├─ bio.singa.structure.parser.ncbi.RefSeqUniProtMapper.class - [JAR]
bio.singa.structure.algorithms.superimposition
├─ bio.singa.structure.algorithms.superimposition.AlignmentMethod.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.FragmentSubstructureSuperimposer.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.MaximumCommonSubgraphSuperimposer.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.SubstructureSuperimposer.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.SubstructureSuperimposition.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.SubstructureSuperimpositionException.class - [JAR]
bio.singa.structure.algorithms.superimposition.fit3d
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3D.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3DAlignment.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3DAlignmentBatch.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3DBuilder.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3DException.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3DMatch.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.Fit3DSiteAlignment.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.ValidCandidateGenerator.class - [JAR]
bio.singa.structure.algorithms.superimposition.fit3d.statistics
├─ bio.singa.structure.algorithms.superimposition.fit3d.statistics.FofanovEstimation.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.statistics.StarkEstimation.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.statistics.StatisticalModel.class - [JAR]
bio.singa.structure.model.families
├─ bio.singa.structure.model.families.AminoAcidFamily.class - [JAR]
├─ bio.singa.structure.model.families.LigandFamily.class - [JAR]
├─ bio.singa.structure.model.families.MatcherFamily.class - [JAR]
├─ bio.singa.structure.model.families.NucleotideFamily.class - [JAR]
├─ bio.singa.structure.model.families.StructuralFamily.class - [JAR]
bio.singa.structure.model.molecules
├─ bio.singa.structure.model.molecules.MoleculeGraphs.class - [JAR]
bio.singa.structure.algorithms.gyration
├─ bio.singa.structure.algorithms.gyration.Gyration.class - [JAR]
bio.singa.structure.algorithms.superimposition.affinity
├─ bio.singa.structure.algorithms.superimposition.affinity.AffinityAlignment.class - [JAR]
bio.singa.structure.model.oak
├─ bio.singa.structure.model.oak.AminoAcids.class - [JAR]
├─ bio.singa.structure.model.oak.AtomName.class - [JAR]
├─ bio.singa.structure.model.oak.Exchangeable.class - [JAR]
├─ bio.singa.structure.model.oak.LeafSubstructureFactory.class - [JAR]
├─ bio.singa.structure.model.oak.OakAminoAcid.class - [JAR]
├─ bio.singa.structure.model.oak.OakAtom.class - [JAR]
├─ bio.singa.structure.model.oak.OakBond.class - [JAR]
├─ bio.singa.structure.model.oak.OakChain.class - [JAR]
├─ bio.singa.structure.model.oak.OakLeafSubstructure.class - [JAR]
├─ bio.singa.structure.model.oak.OakLigand.class - [JAR]
├─ bio.singa.structure.model.oak.OakModel.class - [JAR]
├─ bio.singa.structure.model.oak.OakNucleotide.class - [JAR]
├─ bio.singa.structure.model.oak.OakStructure.class - [JAR]
├─ bio.singa.structure.model.oak.StructuralEntityFilter.class - [JAR]
├─ bio.singa.structure.model.oak.StructuralMotif.class - [JAR]
├─ bio.singa.structure.model.oak.StructuralMotifs.class - [JAR]
├─ bio.singa.structure.model.oak.Structures.class - [JAR]
bio.singa.structure.algorithms.molecules
├─ bio.singa.structure.algorithms.molecules.MoleculeIsomorphism.class - [JAR]
├─ bio.singa.structure.algorithms.molecules.MoleculeIsomorphismFinder.class - [JAR]
├─ bio.singa.structure.algorithms.molecules.MoleculePathFinder.class - [JAR]
├─ bio.singa.structure.algorithms.molecules.MoleculeRingFinder.class - [JAR]
bio.singa.structure.algorithms.superimposition.scores
├─ bio.singa.structure.algorithms.superimposition.scores.PsScore.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.scores.SubstitutionMatrix.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.scores.XieScore.class - [JAR]
bio.singa.structure.parser.pdb.structures.iterators.sources
├─ bio.singa.structure.parser.pdb.structures.iterators.sources.AbstractSourceIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.sources.LocalSourceIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.sources.RemoteMmtfSourceIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.sources.RemotePDBSourceIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.sources.SourceIterator.class - [JAR]
bio.singa.structure.parser.pfam.tokens
├─ bio.singa.structure.parser.pfam.tokens.PfamToken.class - [JAR]
bio.singa.structure.parser.pdb.rest.cluster
├─ bio.singa.structure.parser.pdb.rest.cluster.PDBSequenceCluster.class - [JAR]
├─ bio.singa.structure.parser.pdb.rest.cluster.PDBSequenceClusterMember.class - [JAR]
bio.singa.structure.parser.pdb.rest
├─ bio.singa.structure.parser.pdb.rest.PDBRestEndpoint.class - [JAR]
bio.singa.structure.model.interfaces
├─ bio.singa.structure.model.interfaces.AminoAcid.class - [JAR]
├─ bio.singa.structure.model.interfaces.Atom.class - [JAR]
├─ bio.singa.structure.model.interfaces.AtomContainer.class - [JAR]
├─ bio.singa.structure.model.interfaces.Chain.class - [JAR]
├─ bio.singa.structure.model.interfaces.ChainContainer.class - [JAR]
├─ bio.singa.structure.model.interfaces.LeafSubstructure.class - [JAR]
├─ bio.singa.structure.model.interfaces.LeafSubstructureContainer.class - [JAR]
├─ bio.singa.structure.model.interfaces.Ligand.class - [JAR]
├─ bio.singa.structure.model.interfaces.Model.class - [JAR]
├─ bio.singa.structure.model.interfaces.Nucleotide.class - [JAR]
├─ bio.singa.structure.model.interfaces.Structure.class - [JAR]
bio.singa.structure.algorithms.superimposition.fit3d.representations
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.AbstractRepresentationScheme.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.AlphaCarbonRepresentationScheme.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.BetaCarbonRepresentationScheme.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.CentroidRepresentationScheme.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.LastHeavySidechainRepresentationScheme.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationScheme.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationSchemeFactory.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.RepresentationSchemeType.class - [JAR]
├─ bio.singa.structure.algorithms.superimposition.fit3d.representations.SideChainCentroidRepresentationScheme.class - [JAR]
bio.singa.structure.parser.pdb.structures
├─ bio.singa.structure.parser.pdb.structures.ContentTreeNode.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.LocalCIFRepository.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.LocalPDBRepository.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.SourceLocation.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureCollector.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureParser.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureParserException.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureParserOptions.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureRepresentation.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureSelector.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.StructureWriter.class - [JAR]
bio.singa.structure.model.mmtf
├─ bio.singa.structure.model.mmtf.MmtfAminoAcid.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfAtom.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfChain.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfLeafFactory.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfLeafSubstructure.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfLigand.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfModel.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfNucleotide.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfSecondaryStructure.class - [JAR]
├─ bio.singa.structure.model.mmtf.MmtfStructure.class - [JAR]
bio.singa.structure.parser.pdb.structures.iterators
├─ bio.singa.structure.parser.pdb.structures.iterators.AbstractStructureIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.LocalStructureIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.MmtfReducer.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.MmtfStructureIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.PDBStructureIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.StructureIterator.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.StructureReducer.class - [JAR]
bio.singa.structure.parser.pdb.structures.iterators.converters
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.ContentConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.FileLocationToPathConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.FileToPathConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.IdentifierToMmtfBytesConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.IdentityConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.LocalPDBToPathConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.PDBIdentifierToURLConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.PathToMmtfBytesConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.PathToObjectConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.PathToPDBLinesConverter.class - [JAR]
├─ bio.singa.structure.parser.pdb.structures.iterators.converters.URLToPDBLinesConverter.class - [JAR]
bio.singa.structure.parser.pdb.ligands
├─ bio.singa.structure.parser.pdb.ligands.CifFileParser.class - [JAR]
├─ bio.singa.structure.parser.pdb.ligands.LigandParserService.class - [JAR]
bio.singa.structure.parser.pfam
├─ bio.singa.structure.parser.pfam.PfamParser.class - [JAR]
bio.singa.structure.parser.plip
├─ bio.singa.structure.parser.plip.HalogenBond.class - [JAR]
├─ bio.singa.structure.parser.plip.HydrogenBond.class - [JAR]
├─ bio.singa.structure.parser.plip.HydrophobicInteraction.class - [JAR]
├─ bio.singa.structure.parser.plip.Interaction.class - [JAR]
├─ bio.singa.structure.parser.plip.InteractionContainer.class - [JAR]
├─ bio.singa.structure.parser.plip.InteractionType.class - [JAR]
├─ bio.singa.structure.parser.plip.MetalComplex.class - [JAR]
├─ bio.singa.structure.parser.plip.PiCation.class - [JAR]
├─ bio.singa.structure.parser.plip.PiStacking.class - [JAR]
├─ bio.singa.structure.parser.plip.PlipContentHandler.class - [JAR]
├─ bio.singa.structure.parser.plip.PlipCountFingerprint.class - [JAR]
├─ bio.singa.structure.parser.plip.PlipParser.class - [JAR]
├─ bio.singa.structure.parser.plip.PlipShellGenerator.class - [JAR]
├─ bio.singa.structure.parser.plip.SaltBridge.class - [JAR]
├─ bio.singa.structure.parser.plip.WaterBridge.class - [JAR]
bio.singa.structure.features
├─ bio.singa.structure.features.MolarVolumePredictor.class - [JAR]
├─ bio.singa.structure.features.Structure3D.class - [JAR]
