View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window biojava-alignment-7.0.2.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.biojava.nbio.phylo
├─ org.biojava.nbio.phylo.Comparison.class - [JAR]
├─ org.biojava.nbio.phylo.DistanceMatrixCalculator.class - [JAR]
├─ org.biojava.nbio.phylo.DistanceTreeEvaluator.class - [JAR]
├─ org.biojava.nbio.phylo.ForesterWrapper.class - [JAR]
├─ org.biojava.nbio.phylo.TreeConstructor.class - [JAR]
├─ org.biojava.nbio.phylo.TreeConstructorType.class - [JAR]
├─ org.biojava.nbio.phylo.TreeType.class - [JAR]
org.biojava.nbio.alignment.io
├─ org.biojava.nbio.alignment.io.StockholmConsensusAnnotation.class - [JAR]
├─ org.biojava.nbio.alignment.io.StockholmFileAnnotation.class - [JAR]
├─ org.biojava.nbio.alignment.io.StockholmFileParser.class - [JAR]
├─ org.biojava.nbio.alignment.io.StockholmResidueAnnotation.class - [JAR]
├─ org.biojava.nbio.alignment.io.StockholmSequenceAnnotation.class - [JAR]
├─ org.biojava.nbio.alignment.io.StockholmStructure.class - [JAR]
org.biojava.nbio.alignment
├─ org.biojava.nbio.alignment.Alignments.class - [JAR]
├─ org.biojava.nbio.alignment.FractionalIdentityInProfileScorer.class - [JAR]
├─ org.biojava.nbio.alignment.FractionalIdentityScorer.class - [JAR]
├─ org.biojava.nbio.alignment.FractionalSimilarityInProfileScorer.class - [JAR]
├─ org.biojava.nbio.alignment.FractionalSimilarityScorer.class - [JAR]
├─ org.biojava.nbio.alignment.GuideTree.class - [JAR]
├─ org.biojava.nbio.alignment.NeedlemanWunsch.class - [JAR]
├─ org.biojava.nbio.alignment.SimpleGapPenalty.class - [JAR]
├─ org.biojava.nbio.alignment.SimpleProfileProfileAligner.class - [JAR]
├─ org.biojava.nbio.alignment.SmithWaterman.class - [JAR]
├─ org.biojava.nbio.alignment.StandardRescoreRefiner.class - [JAR]
├─ org.biojava.nbio.alignment.SubstitutionMatrixScorer.class - [JAR]
org.biojava.nbio.alignment.routines
├─ org.biojava.nbio.alignment.routines.AlignerHelper.class - [JAR]
├─ org.biojava.nbio.alignment.routines.AnchoredPairwiseSequenceAligner.class - [JAR]
├─ org.biojava.nbio.alignment.routines.GuanUberbacher.class - [JAR]
org.biojava.nbio.alignment.template
├─ org.biojava.nbio.alignment.template.AbstractMatrixAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.AbstractProfileProfileAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.AbstractScorer.class - [JAR]
├─ org.biojava.nbio.alignment.template.Aligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.CallablePairwiseSequenceScorer.class - [JAR]
├─ org.biojava.nbio.alignment.template.CallableProfileProfileAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.GapPenalty.class - [JAR]
├─ org.biojava.nbio.alignment.template.GuideTreeNode.class - [JAR]
├─ org.biojava.nbio.alignment.template.HierarchicalClusterer.class - [JAR]
├─ org.biojava.nbio.alignment.template.MatrixAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.PairInProfileScorer.class - [JAR]
├─ org.biojava.nbio.alignment.template.PairwiseSequenceAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.PairwiseSequenceScorer.class - [JAR]
├─ org.biojava.nbio.alignment.template.PartitionRefiner.class - [JAR]
├─ org.biojava.nbio.alignment.template.ProfileProfileAligner.class - [JAR]
├─ org.biojava.nbio.alignment.template.ProfileProfileScorer.class - [JAR]
├─ org.biojava.nbio.alignment.template.RescoreRefiner.class - [JAR]
├─ org.biojava.nbio.alignment.template.Scorer.class - [JAR]
