jar

org.biojava : biojava-core

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Jun 02, 2023
20 usages
537 stars

biojava-core

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Version Vulnerabilities Size Updated
7.0.x
6.1.x
6.0.x
5.4.x
5.3.x
5.2.x
5.1.x
5.0.x
4.2.x
4.1.x
4.0.x

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  2. Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window biojava-core-7.0.2.jar file.
    Once you open a JAR file, all the java classes in the JAR file will be displayed.

org.biojava.nbio.core.sequence.io.template

├─ org.biojava.nbio.core.sequence.io.template.FastaHeaderFormatInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.GenbankHeaderFormatInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.SequenceCreatorInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.SequenceHeaderParserInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.template.SequenceParserInterface.class - [JAR]

org.biojava.nbio.core.sequence.template

├─ org.biojava.nbio.core.sequence.template.AbstractCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractCompoundTranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.AbstractSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.Accessioned.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.ComplementCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.Compound.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.CompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.CompoundTranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.LightweightProfile.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.ProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.Sequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceMixin.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceProxyView.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.template.SequenceView.class - [JAR]

org.biojava.nbio.core.search.io

├─ org.biojava.nbio.core.search.io.Hit.class - [JAR]

├─ org.biojava.nbio.core.search.io.Hsp.class - [JAR]

├─ org.biojava.nbio.core.search.io.Result.class - [JAR]

├─ org.biojava.nbio.core.search.io.ResultFactory.class - [JAR]

├─ org.biojava.nbio.core.search.io.SearchIO.class - [JAR]

org.biojava.nbio.core.alignment.matrices

├─ org.biojava.nbio.core.alignment.matrices.AAIndexFileParser.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.AAIndexProvider.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.AAindexFactory.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.ScaledSubstitutionMatrix.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.SimpleSubstitutionMatrix.class - [JAR]

├─ org.biojava.nbio.core.alignment.matrices.SubstitutionMatrixHelper.class - [JAR]

org.biojava.nbio.core.sequence.compound

├─ org.biojava.nbio.core.sequence.compound.ABITracerCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AmbiguityDNACompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AmbiguityRNACompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AminoAcidCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.AminoAcidCompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.CodonCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.DNACompoundSet.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.NucleotideCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.compound.RNACompoundSet.class - [JAR]

org.biojava.nbio.core.sequence.transcription

├─ org.biojava.nbio.core.sequence.transcription.CaseInsensitiveCompound.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.DNAToRNATranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.Frame.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.RNAToAminoAcidTranslator.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.Table.class - [JAR]

├─ org.biojava.nbio.core.sequence.transcription.TranscriptionEngine.class - [JAR]

org.biojava.nbio.core.sequence.location

├─ org.biojava.nbio.core.sequence.location.FuzzyPoint.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.InsdcLocations.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.InsdcParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.LocationHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.SequenceLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.SimpleLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.SimplePoint.class - [JAR]

org.biojava.nbio.core.sequence.edits

├─ org.biojava.nbio.core.sequence.edits.Edit.class - [JAR]

org.biojava.nbio.core.sequence.views

├─ org.biojava.nbio.core.sequence.views.ComplementSequenceView.class - [JAR]

├─ org.biojava.nbio.core.sequence.views.ReversedSequenceView.class - [JAR]

├─ org.biojava.nbio.core.sequence.views.RnaSequenceView.class - [JAR]

├─ org.biojava.nbio.core.sequence.views.WindowedSequence.class - [JAR]

org.biojava.nbio.core.sequence.io

├─ org.biojava.nbio.core.sequence.io.ABITrace.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.BufferedReaderBytesRead.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.CasePreservingProteinSequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.DNASequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaGeneWriter.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaReaderHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaSequenceParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaWriter.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FastaWriterHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FileProxyDNASequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FileProxyProteinSequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.FileProxyRNASequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankReaderHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankSequenceParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankWriter.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenbankWriterHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericFastaHeaderFormat.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericFastaHeaderParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericGenbankHeaderFormat.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericGenbankHeaderParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.GenericInsdcHeaderFormat.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.IUPACParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.PlainFastaHeaderParser.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.ProteinSequenceCreator.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.RNASequenceCreator.class - [JAR]

org.biojava.nbio.core.sequence.io.util

├─ org.biojava.nbio.core.sequence.io.util.ClasspathResource.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.util.IOUtils.class - [JAR]

org.biojava.nbio.core.sequence.loader

├─ org.biojava.nbio.core.sequence.loader.ArrayListProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.SequenceFileProxyLoader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.StringProxySequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.loader.UniprotProxySequenceReader.class - [JAR]

org.biojava.nbio.core.search.io.blast

├─ org.biojava.nbio.core.search.io.blast.BlastHit.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastHitBuilder.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastHsp.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastHspBuilder.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastResult.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastResultBuilder.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastTabularParser.class - [JAR]

├─ org.biojava.nbio.core.search.io.blast.BlastXMLParser.class - [JAR]

org.biojava.nbio.core.alignment.template

├─ org.biojava.nbio.core.alignment.template.AlignedSequence.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableAlignedSequence.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableProfile.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableProfilePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.MutableSequencePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.Profile.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.ProfilePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.ProfileView.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.SequencePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.template.SubstitutionMatrix.class - [JAR]

org.biojava.nbio.core.sequence.features

├─ org.biojava.nbio.core.sequence.features.AbstractFeature.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.DBReferenceInfo.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.DatabaseReferenceInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeatureDbReferenceInfo.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeatureInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeatureRetriever.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.FeaturesKeyWordInterface.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.Qualifier.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.QualityFeature.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.QuantityFeature.class - [JAR]

├─ org.biojava.nbio.core.sequence.features.TextFeature.class - [JAR]

org.biojava.nbio.core.sequence

├─ org.biojava.nbio.core.sequence.AccessionID.class - [JAR]

├─ org.biojava.nbio.core.sequence.BasicSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.CDSComparator.class - [JAR]

├─ org.biojava.nbio.core.sequence.CDSSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.ChromosomeSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.DNASequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.DataSource.class - [JAR]

├─ org.biojava.nbio.core.sequence.ExonComparator.class - [JAR]

├─ org.biojava.nbio.core.sequence.ExonSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.GeneSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.IntronSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.MultipleSequenceAlignment.class - [JAR]

├─ org.biojava.nbio.core.sequence.ProteinSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.RNASequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.SequenceComparator.class - [JAR]

├─ org.biojava.nbio.core.sequence.SequenceOptimizationHints.class - [JAR]

├─ org.biojava.nbio.core.sequence.StartCodonSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.StopCodonSequence.class - [JAR]

├─ org.biojava.nbio.core.sequence.Strand.class - [JAR]

├─ org.biojava.nbio.core.sequence.TaxonomyID.class - [JAR]

├─ org.biojava.nbio.core.sequence.TranscriptSequence.class - [JAR]

org.biojava.nbio.core.util

├─ org.biojava.nbio.core.util.CRC64Checksum.class - [JAR]

├─ org.biojava.nbio.core.util.ConcurrencyTools.class - [JAR]

├─ org.biojava.nbio.core.util.Equals.class - [JAR]

├─ org.biojava.nbio.core.util.FileDownloadUtils.class - [JAR]

├─ org.biojava.nbio.core.util.FlatFileCache.class - [JAR]

├─ org.biojava.nbio.core.util.Hashcoder.class - [JAR]

├─ org.biojava.nbio.core.util.InputStreamProvider.class - [JAR]

├─ org.biojava.nbio.core.util.PrettyXMLWriter.class - [JAR]

├─ org.biojava.nbio.core.util.SequenceTools.class - [JAR]

├─ org.biojava.nbio.core.util.SingleLinkageClusterer.class - [JAR]

├─ org.biojava.nbio.core.util.SoftHashMap.class - [JAR]

├─ org.biojava.nbio.core.util.StringManipulationHelper.class - [JAR]

├─ org.biojava.nbio.core.util.UncompressInputStream.class - [JAR]

├─ org.biojava.nbio.core.util.XMLHelper.class - [JAR]

├─ org.biojava.nbio.core.util.XMLWriter.class - [JAR]

org.biojava.nbio.core.sequence.io.embl

├─ org.biojava.nbio.core.sequence.io.embl.EmblId.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.embl.EmblReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.embl.EmblRecord.class - [JAR]

├─ org.biojava.nbio.core.sequence.io.embl.EmblReference.class - [JAR]

org.biojava.nbio.core.sequence.reference

├─ org.biojava.nbio.core.sequence.reference.AbstractReference.class - [JAR]

├─ org.biojava.nbio.core.sequence.reference.GenbankReference.class - [JAR]

├─ org.biojava.nbio.core.sequence.reference.ReferenceInterface.class - [JAR]

org.biojava.nbio.core.sequence.location.template

├─ org.biojava.nbio.core.sequence.location.template.AbstractLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.template.AccesionedLocation.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.template.Location.class - [JAR]

├─ org.biojava.nbio.core.sequence.location.template.Point.class - [JAR]

org.biojava.nbio.core.sequence.storage

├─ org.biojava.nbio.core.sequence.storage.ArrayListSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.BitSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.FourBitSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.JoiningSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.SequenceAsStringHelper.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.SingleCompoundSequenceReader.class - [JAR]

├─ org.biojava.nbio.core.sequence.storage.TwoBitSequenceReader.class - [JAR]

org.biojava.nbio.core.alignment

├─ org.biojava.nbio.core.alignment.SimpleAlignedSequence.class - [JAR]

├─ org.biojava.nbio.core.alignment.SimpleProfile.class - [JAR]

├─ org.biojava.nbio.core.alignment.SimpleProfilePair.class - [JAR]

├─ org.biojava.nbio.core.alignment.SimpleSequencePair.class - [JAR]

org.biojava.nbio.core.exceptions

├─ org.biojava.nbio.core.exceptions.CompoundNotFoundException.class - [JAR]

├─ org.biojava.nbio.core.exceptions.Messages.class - [JAR]

├─ org.biojava.nbio.core.exceptions.ParserException.class - [JAR]

├─ org.biojava.nbio.core.exceptions.TranslationException.class - [JAR]

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