View Java Class Source Code in JAR file
- Download JD-GUI to open JAR file and explore Java source code file (.class .java)
- Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window opencga-storage-core-2.8.3.jar file.
Once you open a JAR file, all the java classes in the JAR file will be displayed.
org.opencb.opencga.storage.core.variant.query.filters
├─ org.opencb.opencga.storage.core.variant.query.filters.NumericFilter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.filters.PopulationFrequencyVariantFilter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.filters.VariantFilterBuilder.class - [JAR]
org.opencb.opencga.storage.core.variant.annotation.annotators
├─ org.opencb.opencga.storage.core.variant.annotation.annotators.AbstractCellBaseVariantAnnotator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.annotation.annotators.CellBaseRestVariantAnnotator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.annotation.annotators.VariantAnnotator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.annotation.annotators.VariantAnnotatorFactory.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.annotation.annotators.VepVariantAnnotator.class - [JAR]
org.opencb.opencga.storage.core.utils.iterators
├─ org.opencb.opencga.storage.core.utils.iterators.CloseableIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.utils.iterators.IntersectMultiKeyIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.utils.iterators.IteratorWithClosable.class - [JAR]
├─ org.opencb.opencga.storage.core.utils.iterators.MultiKeyIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.utils.iterators.UnionMultiKeyIterator.class - [JAR]
org.opencb.opencga.storage.core.metadata.adaptors
├─ org.opencb.opencga.storage.core.metadata.adaptors.CohortMetadataDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.adaptors.FileMetadataDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.adaptors.ProjectMetadataAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.adaptors.SampleMetadataDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.adaptors.StudyMetadataDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.adaptors.TaskMetadataDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.adaptors.VariantStorageMetadataDBAdaptorFactory.class - [JAR]
org.opencb.opencga.storage.core.io.proto
├─ org.opencb.opencga.storage.core.io.proto.ProtoFileWriter.class - [JAR]
org.opencb.opencga.storage.core.variant.adaptors
├─ org.opencb.opencga.storage.core.variant.adaptors.GenotypeClass.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.VariantDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.VariantField.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.VariantIterable.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.VariantQuery.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.VariantQueryException.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.VariantQueryParam.class - [JAR]
org.opencb.opencga.storage.core.variant.io.json.mixin
├─ org.opencb.opencga.storage.core.variant.io.json.mixin.ConsequenceTypeMixin.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.json.mixin.VariantAnnotationMixin.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.json.mixin.VariantSourceEntryJsonMixin.class - [JAR]
org.opencb.opencga.storage.core.variant.annotation
├─ org.opencb.opencga.storage.core.variant.annotation.DefaultVariantAnnotationManager.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.annotation.VariantAnnotationManager.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.annotation.VariantAnnotatorException.class - [JAR]
org.opencb.opencga.storage.core.variant.analysis
├─ org.opencb.opencga.storage.core.variant.analysis.VariantSampleFilter.class - [JAR]
org.opencb.opencga.storage.core
├─ org.opencb.opencga.storage.core.StorageEngine.class - [JAR]
├─ org.opencb.opencga.storage.core.StorageEngineFactory.class - [JAR]
├─ org.opencb.opencga.storage.core.StoragePipeline.class - [JAR]
├─ org.opencb.opencga.storage.core.StoragePipelineResult.class - [JAR]
org.opencb.opencga.storage.core.variant.transform
├─ org.opencb.opencga.storage.core.variant.transform.MalformedVariantHandler.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.transform.RemapVariantIdsTask.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.transform.VariantTransformTask.class - [JAR]
org.opencb.opencga.storage.core.variant.stats
├─ org.opencb.opencga.storage.core.variant.stats.DefaultVariantStatisticsManager.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.stats.SampleVariantStatsAggregationQuery.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.stats.VariantStatisticsCalculator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.stats.VariantStatisticsManager.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.stats.VariantStatsWrapper.class - [JAR]
org.opencb.opencga.storage.core.variant.query.executors
├─ org.opencb.opencga.storage.core.variant.query.executors.AbstractTwoPhasedVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.BreakendVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.ChromDensityVariantAggregationExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.CompoundHeterozygousQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.DBAdaptorVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.NoOpVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.VariantAggregationExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.VariantQueryExecutor.class - [JAR]
org.opencb.opencga.storage.core.io
├─ org.opencb.opencga.storage.core.io.VcfVariantReader.class - [JAR]
org.opencb.opencga.storage.core.variant.dedup
├─ org.opencb.opencga.storage.core.variant.dedup.AbstractDuplicatedVariantsResolver.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.dedup.DiscardDuplicatedVariantsResolver.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.dedup.DuplicatedVariantsResolverFactory.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.dedup.MaxQualDuplicatedVariantsResolver.class - [JAR]
org.opencb.opencga.storage.core.variant.adaptors.iterators
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.BufferedMappedVariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.DelegatedVariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.IntersectMultiVariantKeyIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.LimitVariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.MapperVariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.MultiVariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.UnionMultiVariantKeyIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.VariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.VariantDBIteratorWithCounts.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.adaptors.iterators.VariantDBIteratorWrapper.class - [JAR]
org.opencb.opencga.storage.core.alignment.local
├─ org.opencb.opencga.storage.core.alignment.local.LocalAlignmentDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.alignment.local.LocalAlignmentStorageEngine.class - [JAR]
├─ org.opencb.opencga.storage.core.alignment.local.LocalAlignmentStoragePipeline.class - [JAR]
org.opencb.opencga.storage.core.variant.search.solr
├─ org.opencb.opencga.storage.core.variant.search.solr.SolrInputDocumentDataWriter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.solr.SolrNativeIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.solr.SolrQueryParser.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.solr.SolrVariantDBIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.solr.VariantSearchLoadResult.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.solr.VariantSearchManager.class - [JAR]
org.opencb.opencga.storage.core.cache
├─ org.opencb.opencga.storage.core.cache.CacheManager.class - [JAR]
org.opencb.opencga.storage.core.io.plain
├─ org.opencb.opencga.storage.core.io.plain.StringDataReader.class - [JAR]
├─ org.opencb.opencga.storage.core.io.plain.StringDataWriter.class - [JAR]
org.opencb.opencga.storage.core.variant.score
├─ org.opencb.opencga.storage.core.variant.score.VariantScoreFormatDescriptor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.score.VariantScoreLoader.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.score.VariantScoreParser.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.score.VariantScoreRemover.class - [JAR]
org.opencb.opencga.storage.core.variant.adaptors.sample
├─ org.opencb.opencga.storage.core.variant.adaptors.sample.VariantSampleDataManager.class - [JAR]
org.opencb.opencga.storage.core.variant
├─ org.opencb.opencga.storage.core.variant.BeaconResponse.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.VariantStorageEngine.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.VariantStorageOptions.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.VariantStoragePipeline.class - [JAR]
org.opencb.opencga.storage.core.metadata.models
├─ org.opencb.opencga.storage.core.metadata.models.CohortMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.FileMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.Lock.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.ProjectMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.SampleMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.SampleVariantStatsMixin.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.StudyMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.StudyResourceMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.TaskMetadata.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.Trio.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.models.VariantScoreMetadata.class - [JAR]
org.opencb.opencga.storage.core.utils
├─ org.opencb.opencga.storage.core.utils.CellBaseUtils.class - [JAR]
org.opencb.opencga.storage.core.variant.query.projection
├─ org.opencb.opencga.storage.core.variant.query.projection.VariantQueryProjection.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.projection.VariantQueryProjectionParser.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.projection.VariantQueryStudyProjection.class - [JAR]
org.opencb.opencga.storage.core.exceptions
├─ org.opencb.opencga.storage.core.exceptions.StorageEngineException.class - [JAR]
├─ org.opencb.opencga.storage.core.exceptions.StoragePipelineException.class - [JAR]
├─ org.opencb.opencga.storage.core.exceptions.VariantSearchException.class - [JAR]
org.opencb.opencga.storage.core.io.bit
├─ org.opencb.opencga.storage.core.io.bit.BitBuffer.class - [JAR]
├─ org.opencb.opencga.storage.core.io.bit.BitInputStream.class - [JAR]
├─ org.opencb.opencga.storage.core.io.bit.BitOutputStream.class - [JAR]
├─ org.opencb.opencga.storage.core.io.bit.ExposedByteArrayOutputStream.class - [JAR]
org.opencb.opencga.storage.core.variant.query.executors.accumulators
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.CategoricalAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.ChromDensityAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.ChromosomeAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.FacetFieldAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.Range.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.RangeAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.RatioAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.VariantChromDensityAccumulator.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.executors.accumulators.VariantTypeAccumulator.class - [JAR]
org.opencb.opencga.storage.core.clinical
├─ org.opencb.opencga.storage.core.clinical.ClinicalVariantEngine.class - [JAR]
├─ org.opencb.opencga.storage.core.clinical.ClinicalVariantException.class - [JAR]
├─ org.opencb.opencga.storage.core.clinical.ClinicalVariantIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.clinical.ClinicalVariantQueryParam.class - [JAR]
org.opencb.opencga.storage.core.alignment
├─ org.opencb.opencga.storage.core.alignment.AlignmentDBAdaptor.class - [JAR]
├─ org.opencb.opencga.storage.core.alignment.AlignmentStorageEngine.class - [JAR]
├─ org.opencb.opencga.storage.core.alignment.AlignmentStorageOptions.class - [JAR]
org.opencb.opencga.storage.core.variant.io.avro
├─ org.opencb.opencga.storage.core.variant.io.avro.VariantAvroReader.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.avro.VariantAvroWriter.class - [JAR]
org.opencb.opencga.storage.core.io.json
├─ org.opencb.opencga.storage.core.io.json.JsonDataReader.class - [JAR]
├─ org.opencb.opencga.storage.core.io.json.JsonSerializerTask.class - [JAR]
org.opencb.opencga.storage.core.metadata
├─ org.opencb.opencga.storage.core.metadata.MetadataCache.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.StudyConfiguration.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.VariantMetadataConverter.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.VariantMetadataFactory.class - [JAR]
├─ org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.class - [JAR]
org.opencb.opencga.storage.core.variant.query
├─ org.opencb.opencga.storage.core.variant.query.KeyOpValue.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.KeyValues.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.OpValue.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.ParsedQuery.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.ParsedVariantQuery.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.QueryElement.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.Values.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.VariantQueryParser.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.query.VariantQueryUtils.class - [JAR]
org.opencb.opencga.storage.core.variant.search
├─ org.opencb.opencga.storage.core.variant.search.AbstractSearchIndexVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.SamplesSearchIndexVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.SearchIndexVariantAggregationExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.SearchIndexVariantQueryExecutor.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.VariantSearchModel.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.VariantSearchToVariantConverter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.VariantSearchUtils.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.VariantSecondaryIndexFilter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.search.VariantToSolrBeanConverterTask.class - [JAR]
org.opencb.opencga.storage.core.auth
├─ org.opencb.opencga.storage.core.auth.IllegalOpenCGACredentialsException.class - [JAR]
├─ org.opencb.opencga.storage.core.auth.OpenCGACredentials.class - [JAR]
org.opencb.opencga.storage.core.variant.io.db
├─ org.opencb.opencga.storage.core.variant.io.db.VariantAnnotationDBWriter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.db.VariantDBReader.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.db.VariantStatsDBWriter.class - [JAR]
org.opencb.opencga.storage.core.io.managers
├─ org.opencb.opencga.storage.core.io.managers.AzureBlobStorageIOConnector.class - [JAR]
├─ org.opencb.opencga.storage.core.io.managers.IOConnector.class - [JAR]
├─ org.opencb.opencga.storage.core.io.managers.IOConnectorProvider.class - [JAR]
├─ org.opencb.opencga.storage.core.io.managers.LocalIOConnector.class - [JAR]
org.opencb.opencga.storage.core.alignment.iterators
├─ org.opencb.opencga.storage.core.alignment.iterators.AlignmentIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.alignment.iterators.ProtoAlignmentIterator.class - [JAR]
├─ org.opencb.opencga.storage.core.alignment.iterators.SamRecordAlignmentIterator.class - [JAR]
org.opencb.opencga.storage.core.variant.io.json
├─ org.opencb.opencga.storage.core.variant.io.json.VariantAnnotationJsonDataReader.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.json.VariantAnnotationJsonDataWriter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.json.VariantJsonReader.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.json.VariantJsonWriter.class - [JAR]
org.opencb.opencga.storage.core.variant.io
├─ org.opencb.opencga.storage.core.variant.io.AbstractVariantReader.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantExporter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantImporter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantMetadataImporter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantReaderUtils.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantTpedWriter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantVcfDataWriter.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VariantWriterFactory.class - [JAR]
├─ org.opencb.opencga.storage.core.variant.io.VcfDataWriter.class - [JAR]
org.opencb.opencga.storage.core.variant.annotation.converters
├─ org.opencb.opencga.storage.core.variant.annotation.converters.VariantTraitAssociationToEvidenceEntryConverter.class - [JAR]
