jar

org.dishevelled : dsh-bio-compress-hdfs

Maven & Gradle

Mar 07, 2023
6 stars

dsh-bio-compress-hdfs · HDFS support for dsh-compress.

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Latest Version

Download org.dishevelled : dsh-bio-compress-hdfs JAR file - Latest Versions:

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Download org.dishevelled : dsh-bio-compress-hdfs JAR file - All Versions:

Version Vulnerabilities Size Updated
2.2
dsh-bio-compress-hdfs-2.2.jar
2.1
dsh-bio-compress-hdfs-2.1.jar
2.0.x
dsh-bio-compress-hdfs-2.0.9.jar
dsh-bio-compress-hdfs-2.0.8.jar
dsh-bio-compress-hdfs-2.0.7.jar
dsh-bio-compress-hdfs-2.0.6.jar
dsh-bio-compress-hdfs-2.0.5.jar
dsh-bio-compress-hdfs-2.0.4.jar
dsh-bio-compress-hdfs-2.0.3.jar
dsh-bio-compress-hdfs-2.0.2.jar
dsh-bio-compress-hdfs-2.0.1.jar
2.0
dsh-bio-compress-hdfs-2.0.jar
1.4
dsh-bio-compress-hdfs-1.4.jar
1.3.x
dsh-bio-compress-hdfs-1.3.4.jar
dsh-bio-compress-hdfs-1.3.3.jar
dsh-bio-compress-hdfs-1.3.2.jar
dsh-bio-compress-hdfs-1.3.1.jar
1.3
dsh-bio-compress-hdfs-1.3.jar
1.2.x
dsh-bio-compress-hdfs-1.2.1.jar
1.2
dsh-bio-compress-hdfs-1.2.jar
1.1
dsh-bio-compress-hdfs-1.1.jar

View Java Class Source Code in JAR file

  1. Download JD-GUI to open JAR file and explore Java source code file (.class .java)
  2. Click menu "File → Open File..." or just drag-and-drop the JAR file in the JD-GUI window dsh-bio-compress-hdfs-2.2.jar file.
    Once you open a JAR file, all the java classes in the JAR file will be displayed.

org.biojava.stats.svm.tools

├─ org.biojava.stats.svm.tools.ClassifierExample.class - [JAR]

├─ org.biojava.stats.svm.tools.Classify.class - [JAR]

├─ org.biojava.stats.svm.tools.SVM_Light.class - [JAR]

├─ org.biojava.stats.svm.tools.SuffixTreeKernel.class - [JAR]

├─ org.biojava.stats.svm.tools.Train.class - [JAR]

├─ org.biojava.stats.svm.tools.TrainRegression.class - [JAR]

org.apache.commons.codec.cli

├─ org.apache.commons.codec.cli.Digest.class - [JAR]

htsjdk.samtools.util.nio

├─ htsjdk.samtools.util.nio.DeleteOnExitPathHook.class - [JAR]

org.biojava.utils.regex

├─ org.biojava.utils.regex.Matcher.class - [JAR]

├─ org.biojava.utils.regex.Pattern.class - [JAR]

├─ org.biojava.utils.regex.PatternChecker.class - [JAR]

├─ org.biojava.utils.regex.PatternFactory.class - [JAR]

├─ org.biojava.utils.regex.RegexException.class - [JAR]

├─ org.biojava.utils.regex.Search.class - [JAR]

htsjdk.variant.variantcontext.writer

├─ htsjdk.variant.variantcontext.writer.AsyncVariantContextWriter.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.BCF2Encoder.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.BCF2FieldEncoder.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.BCF2FieldWriter.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.BCF2FieldWriterManager.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.BCF2Writer.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.IndexingVariantContextWriter.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.IntGenotypeFieldAccessors.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.Options.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.SortingVariantContextWriter.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.SortingVariantContextWriterBase.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.VCFWriter.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.VariantContextWriter.class - [JAR]

├─ htsjdk.variant.variantcontext.writer.VariantContextWriterBuilder.class - [JAR]

org.dishevelled.bio.variant.vcf

├─ org.dishevelled.bio.variant.vcf.StreamingVcfParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfAttributes.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfGenome.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfGenotype.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfHeader.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfHeaderParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfParseAdapter.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfParseListener.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfPedigree.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfPedigreeParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfReader.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfRecord.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfRecordParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfSample.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfSampleParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfStreamAdapter.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfStreamListener.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.VcfWriter.class - [JAR]

org.apache.commons.compress.compressors.lz77support

├─ org.apache.commons.compress.compressors.lz77support.AbstractLZ77CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lz77support.LZ77Compressor.class - [JAR]

├─ org.apache.commons.compress.compressors.lz77support.Parameters.class - [JAR]

org.checkerframework.checker.calledmethods.qual

├─ org.checkerframework.checker.calledmethods.qual.CalledMethods.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.CalledMethodsBottom.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.CalledMethodsPredicate.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.EnsuresCalledMethods.class - [JAR]

├─ org.checkerframework.checker.calledmethods.qual.EnsuresCalledMethodsIf.class - [JAR]

org.apache.commons.compress.compressors.lzma

├─ org.apache.commons.compress.compressors.lzma.LZMACompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lzma.LZMACompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lzma.LZMAUtils.class - [JAR]

htsjdk.samtools.util

├─ htsjdk.samtools.util.AbstractAsyncWriter.class - [JAR]

├─ htsjdk.samtools.util.AbstractIterator.class - [JAR]

├─ htsjdk.samtools.util.AbstractLocusInfo.class - [JAR]

├─ htsjdk.samtools.util.AbstractLocusIterator.class - [JAR]

├─ htsjdk.samtools.util.AbstractProgressLogger.class - [JAR]

├─ htsjdk.samtools.util.AbstractRecordAndOffset.class - [JAR]

├─ htsjdk.samtools.util.AsciiWriter.class - [JAR]

├─ htsjdk.samtools.util.AsyncBlockCompressedInputStream.class - [JAR]

├─ htsjdk.samtools.util.AsyncBufferedIterator.class - [JAR]

├─ htsjdk.samtools.util.BinaryCodec.class - [JAR]

├─ htsjdk.samtools.util.BlockCompressedFilePointerUtil.class - [JAR]

├─ htsjdk.samtools.util.BlockCompressedInputStream.class - [JAR]

├─ htsjdk.samtools.util.BlockCompressedOutputStream.class - [JAR]

├─ htsjdk.samtools.util.BlockCompressedStreamConstants.class - [JAR]

├─ htsjdk.samtools.util.BlockGunzipper.class - [JAR]

├─ htsjdk.samtools.util.BufferedLineReader.class - [JAR]

├─ htsjdk.samtools.util.CigarUtil.class - [JAR]

├─ htsjdk.samtools.util.CloseableIterator.class - [JAR]

├─ htsjdk.samtools.util.CloserUtil.class - [JAR]

├─ htsjdk.samtools.util.CodeUtil.class - [JAR]

├─ htsjdk.samtools.util.CollectionUtil.class - [JAR]

├─ htsjdk.samtools.util.ComparableTuple.class - [JAR]

├─ htsjdk.samtools.util.CoordMath.class - [JAR]

├─ htsjdk.samtools.util.CoordSpanInputSteam.class - [JAR]

├─ htsjdk.samtools.util.CustomGzipOutputStream.class - [JAR]

├─ htsjdk.samtools.util.DateParser.class - [JAR]

├─ htsjdk.samtools.util.DelegatingIterator.class - [JAR]

├─ htsjdk.samtools.util.DiskBackedQueue.class - [JAR]

├─ htsjdk.samtools.util.EdgeReadIterator.class - [JAR]

├─ htsjdk.samtools.util.EdgingRecordAndOffset.class - [JAR]

├─ htsjdk.samtools.util.FastLineReader.class - [JAR]

├─ htsjdk.samtools.util.FastqQualityFormat.class - [JAR]

├─ htsjdk.samtools.util.FileAppendStreamLRUCache.class - [JAR]

├─ htsjdk.samtools.util.FileExtensions.class - [JAR]

├─ htsjdk.samtools.util.FormatUtil.class - [JAR]

├─ htsjdk.samtools.util.GZIIndex.class - [JAR]

├─ htsjdk.samtools.util.Histogram.class - [JAR]

├─ htsjdk.samtools.util.HttpUtils.class - [JAR]

├─ htsjdk.samtools.util.IOUtil.class - [JAR]

├─ htsjdk.samtools.util.Interval.class - [JAR]

├─ htsjdk.samtools.util.IntervalCodec.class - [JAR]

├─ htsjdk.samtools.util.IntervalCoordinateComparator.class - [JAR]

├─ htsjdk.samtools.util.IntervalList.class - [JAR]

├─ htsjdk.samtools.util.IntervalListReferenceSequenceMask.class - [JAR]

├─ htsjdk.samtools.util.IntervalListWriter.class - [JAR]

├─ htsjdk.samtools.util.IntervalTree.class - [JAR]

├─ htsjdk.samtools.util.IntervalTreeMap.class - [JAR]

├─ htsjdk.samtools.util.IntervalUtil.class - [JAR]

├─ htsjdk.samtools.util.Iso8601Date.class - [JAR]

├─ htsjdk.samtools.util.IterableAdapter.class - [JAR]

├─ htsjdk.samtools.util.IterableOnceIterator.class - [JAR]

├─ htsjdk.samtools.util.Iterables.class - [JAR]

├─ htsjdk.samtools.util.Lazy.class - [JAR]

├─ htsjdk.samtools.util.LineReader.class - [JAR]

├─ htsjdk.samtools.util.ListMap.class - [JAR]

├─ htsjdk.samtools.util.Locatable.class - [JAR]

├─ htsjdk.samtools.util.LocationAware.class - [JAR]

├─ htsjdk.samtools.util.Locus.class - [JAR]

├─ htsjdk.samtools.util.LocusComparator.class - [JAR]

├─ htsjdk.samtools.util.LocusImpl.class - [JAR]

├─ htsjdk.samtools.util.Log.class - [JAR]

├─ htsjdk.samtools.util.Md5CalculatingInputStream.class - [JAR]

├─ htsjdk.samtools.util.Md5CalculatingOutputStream.class - [JAR]

├─ htsjdk.samtools.util.MergingIterator.class - [JAR]

├─ htsjdk.samtools.util.Murmur3.class - [JAR]

├─ htsjdk.samtools.util.OverlapDetector.class - [JAR]

├─ htsjdk.samtools.util.PeekIterator.class - [JAR]

├─ htsjdk.samtools.util.PeekableIterator.class - [JAR]

├─ htsjdk.samtools.util.PositionalOutputStream.class - [JAR]

├─ htsjdk.samtools.util.ProcessExecutor.class - [JAR]

├─ htsjdk.samtools.util.ProgressLogger.class - [JAR]

├─ htsjdk.samtools.util.ProgressLoggerInterface.class - [JAR]

├─ htsjdk.samtools.util.QualityEncodingDetector.class - [JAR]

├─ htsjdk.samtools.util.QualityUtil.class - [JAR]

├─ htsjdk.samtools.util.ReferenceSequenceMask.class - [JAR]

├─ htsjdk.samtools.util.RelativeIso8601Date.class - [JAR]

├─ htsjdk.samtools.util.ResourceLimitedMap.class - [JAR]

├─ htsjdk.samtools.util.ResourceLimitedMapFunctor.class - [JAR]

├─ htsjdk.samtools.util.RuntimeEOFException.class - [JAR]

├─ htsjdk.samtools.util.RuntimeIOException.class - [JAR]

├─ htsjdk.samtools.util.RuntimeScriptException.class - [JAR]

├─ htsjdk.samtools.util.SAMRecordPrefetchingIterator.class - [JAR]

├─ htsjdk.samtools.util.SamConstants.class - [JAR]

├─ htsjdk.samtools.util.SamLocusIterator.class - [JAR]

├─ htsjdk.samtools.util.SamRecordIntervalIteratorFactory.class - [JAR]

├─ htsjdk.samtools.util.SamRecordTrackingBuffer.class - [JAR]

├─ htsjdk.samtools.util.SamRecordWithOrdinal.class - [JAR]

├─ htsjdk.samtools.util.SequenceUtil.class - [JAR]

├─ htsjdk.samtools.util.SnappyLoader.class - [JAR]

├─ htsjdk.samtools.util.SolexaQualityConverter.class - [JAR]

├─ htsjdk.samtools.util.SortingCollection.class - [JAR]

├─ htsjdk.samtools.util.SortingLongCollection.class - [JAR]

├─ htsjdk.samtools.util.StopWatch.class - [JAR]

├─ htsjdk.samtools.util.StringLineReader.class - [JAR]

├─ htsjdk.samtools.util.StringUtil.class - [JAR]

├─ htsjdk.samtools.util.TempStreamFactory.class - [JAR]

├─ htsjdk.samtools.util.TerminatorlessBlockCompressedOutputStream.class - [JAR]

├─ htsjdk.samtools.util.TestUtil.class - [JAR]

├─ htsjdk.samtools.util.TrimmingUtil.class - [JAR]

├─ htsjdk.samtools.util.Tuple.class - [JAR]

├─ htsjdk.samtools.util.WholeGenomeReferenceSequenceMask.class - [JAR]

org.biojava.utils

├─ org.biojava.utils.AbstractChangeable.class - [JAR]

├─ org.biojava.utils.ActivityListener.class - [JAR]

├─ org.biojava.utils.AssertionFailure.class - [JAR]

├─ org.biojava.utils.BeanAsMap.class - [JAR]

├─ org.biojava.utils.ChangeAdapter.class - [JAR]

├─ org.biojava.utils.ChangeEvent.class - [JAR]

├─ org.biojava.utils.ChangeForwarder.class - [JAR]

├─ org.biojava.utils.ChangeHub.class - [JAR]

├─ org.biojava.utils.ChangeListener.class - [JAR]

├─ org.biojava.utils.ChangeSupport.class - [JAR]

├─ org.biojava.utils.ChangeType.class - [JAR]

├─ org.biojava.utils.ChangeVetoException.class - [JAR]

├─ org.biojava.utils.Changeable.class - [JAR]

├─ org.biojava.utils.ClassTools.class - [JAR]

├─ org.biojava.utils.CommitFailure.class - [JAR]

├─ org.biojava.utils.Commitable.class - [JAR]

├─ org.biojava.utils.Constants.class - [JAR]

├─ org.biojava.utils.ExecRunner.class - [JAR]

├─ org.biojava.utils.FileAsList.class - [JAR]

├─ org.biojava.utils.IndexedChangeHub.class - [JAR]

├─ org.biojava.utils.JDBCConnectionPool.class - [JAR]

├─ org.biojava.utils.JDBCPooledDataSource.class - [JAR]

├─ org.biojava.utils.ListTools.class - [JAR]

├─ org.biojava.utils.MergingIterator.class - [JAR]

├─ org.biojava.utils.MergingSet.class - [JAR]

├─ org.biojava.utils.ObjectUtil.class - [JAR]

├─ org.biojava.utils.OverlayMap.class - [JAR]

├─ org.biojava.utils.ParseErrorEvent.class - [JAR]

├─ org.biojava.utils.ParseErrorListener.class - [JAR]

├─ org.biojava.utils.ParseErrorSource.class - [JAR]

├─ org.biojava.utils.ParserException.class - [JAR]

├─ org.biojava.utils.ProcessTimeoutException.class - [JAR]

├─ org.biojava.utils.ProcessTools.class - [JAR]

├─ org.biojava.utils.RepeatedCharSequence.class - [JAR]

├─ org.biojava.utils.Services.class - [JAR]

├─ org.biojava.utils.SimpleThreadPool.class - [JAR]

├─ org.biojava.utils.SingletonList.class - [JAR]

├─ org.biojava.utils.SmallMap.class - [JAR]

├─ org.biojava.utils.SmallSet.class - [JAR]

├─ org.biojava.utils.StaticMemberPlaceHolder.class - [JAR]

├─ org.biojava.utils.StreamGobbler.class - [JAR]

├─ org.biojava.utils.ThreadPool.class - [JAR]

├─ org.biojava.utils.TriState.class - [JAR]

├─ org.biojava.utils.TypedProperties.class - [JAR]

├─ org.biojava.utils.Unchangeable.class - [JAR]

org.biojavax.bio

├─ org.biojavax.bio.BioEntry.class - [JAR]

├─ org.biojavax.bio.BioEntryIterator.class - [JAR]

├─ org.biojavax.bio.BioEntryRelationship.class - [JAR]

├─ org.biojavax.bio.SimpleBioEntry.class - [JAR]

├─ org.biojavax.bio.SimpleBioEntryRelationship.class - [JAR]

org.biojava.utils.cache

├─ org.biojava.utils.cache.Cache.class - [JAR]

├─ org.biojava.utils.cache.CacheMap.class - [JAR]

├─ org.biojava.utils.cache.CacheReference.class - [JAR]

├─ org.biojava.utils.cache.ChangeableCache.class - [JAR]

├─ org.biojava.utils.cache.FixedSizeCache.class - [JAR]

├─ org.biojava.utils.cache.FixedSizeMap.class - [JAR]

├─ org.biojava.utils.cache.KeyedWeakReference.class - [JAR]

├─ org.biojava.utils.cache.SoftReferenceCache.class - [JAR]

├─ org.biojava.utils.cache.WeakCacheMap.class - [JAR]

├─ org.biojava.utils.cache.WeakValueHashMap.class - [JAR]

htsjdk.samtools.cram.build

├─ htsjdk.samtools.cram.build.CRAMReferenceRegion.class - [JAR]

├─ htsjdk.samtools.cram.build.CompressionHeaderFactory.class - [JAR]

├─ htsjdk.samtools.cram.build.ContainerFactory.class - [JAR]

├─ htsjdk.samtools.cram.build.CramContainerHeaderIterator.class - [JAR]

├─ htsjdk.samtools.cram.build.CramContainerIterator.class - [JAR]

├─ htsjdk.samtools.cram.build.CramIO.class - [JAR]

├─ htsjdk.samtools.cram.build.CramSpanContainerIterator.class - [JAR]

├─ htsjdk.samtools.cram.build.SliceFactory.class - [JAR]

├─ htsjdk.samtools.cram.build.Utils.class - [JAR]

org.apache.commons.logging.impl

├─ org.apache.commons.logging.impl.AvalonLogger.class - [JAR]

├─ org.apache.commons.logging.impl.Jdk13LumberjackLogger.class - [JAR]

├─ org.apache.commons.logging.impl.Jdk14Logger.class - [JAR]

├─ org.apache.commons.logging.impl.Log4JLogger.class - [JAR]

├─ org.apache.commons.logging.impl.LogFactoryImpl.class - [JAR]

├─ org.apache.commons.logging.impl.LogKitLogger.class - [JAR]

├─ org.apache.commons.logging.impl.NoOpLog.class - [JAR]

├─ org.apache.commons.logging.impl.ServletContextCleaner.class - [JAR]

├─ org.apache.commons.logging.impl.SimpleLog.class - [JAR]

├─ org.apache.commons.logging.impl.WeakHashtable.class - [JAR]

org.checkerframework.framework.qual

├─ org.checkerframework.framework.qual.AnnotatedFor.class - [JAR]

├─ org.checkerframework.framework.qual.CFComment.class - [JAR]

├─ org.checkerframework.framework.qual.ConditionalPostconditionAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.Covariant.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultFor.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultQualifierForUse.class - [JAR]

├─ org.checkerframework.framework.qual.DefaultQualifierInHierarchy.class - [JAR]

├─ org.checkerframework.framework.qual.EnsuresQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.EnsuresQualifierIf.class - [JAR]

├─ org.checkerframework.framework.qual.FieldInvariant.class - [JAR]

├─ org.checkerframework.framework.qual.FromByteCode.class - [JAR]

├─ org.checkerframework.framework.qual.FromStubFile.class - [JAR]

├─ org.checkerframework.framework.qual.HasQualifierParameter.class - [JAR]

├─ org.checkerframework.framework.qual.IgnoreInWholeProgramInference.class - [JAR]

├─ org.checkerframework.framework.qual.InheritedAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.InvisibleQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.JavaExpression.class - [JAR]

├─ org.checkerframework.framework.qual.LiteralKind.class - [JAR]

├─ org.checkerframework.framework.qual.MonotonicQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.NoDefaultQualifierForUse.class - [JAR]

├─ org.checkerframework.framework.qual.NoQualifierParameter.class - [JAR]

├─ org.checkerframework.framework.qual.PolymorphicQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.PostconditionAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.PreconditionAnnotation.class - [JAR]

├─ org.checkerframework.framework.qual.PurityUnqualified.class - [JAR]

├─ org.checkerframework.framework.qual.QualifierArgument.class - [JAR]

├─ org.checkerframework.framework.qual.QualifierForLiterals.class - [JAR]

├─ org.checkerframework.framework.qual.RelevantJavaTypes.class - [JAR]

├─ org.checkerframework.framework.qual.RequiresQualifier.class - [JAR]

├─ org.checkerframework.framework.qual.StubFiles.class - [JAR]

├─ org.checkerframework.framework.qual.SubtypeOf.class - [JAR]

├─ org.checkerframework.framework.qual.TargetLocations.class - [JAR]

├─ org.checkerframework.framework.qual.TypeKind.class - [JAR]

├─ org.checkerframework.framework.qual.TypeUseLocation.class - [JAR]

├─ org.checkerframework.framework.qual.Unused.class - [JAR]

├─ org.checkerframework.framework.qual.UpperBoundFor.class - [JAR]

org.biojava.bio

├─ org.biojava.bio.AbstractAnnotation.class - [JAR]

├─ org.biojava.bio.Annotatable.class - [JAR]

├─ org.biojava.bio.Annotation.class - [JAR]

├─ org.biojava.bio.AnnotationChanger.class - [JAR]

├─ org.biojava.bio.AnnotationRenamer.class - [JAR]

├─ org.biojava.bio.AnnotationTools.class - [JAR]

├─ org.biojava.bio.AnnotationType.class - [JAR]

├─ org.biojava.bio.AnyPropertyConstraint.class - [JAR]

├─ org.biojava.bio.BeanAsAnnotation.class - [JAR]

├─ org.biojava.bio.BioError.class - [JAR]

├─ org.biojava.bio.BioException.class - [JAR]

├─ org.biojava.bio.BioRuntimeException.class - [JAR]

├─ org.biojava.bio.CardinalityConstraint.class - [JAR]

├─ org.biojava.bio.CollectionConstraint.class - [JAR]

├─ org.biojava.bio.EcNumber.class - [JAR]

├─ org.biojava.bio.EmptyAnnotation.class - [JAR]

├─ org.biojava.bio.MergeAnnotation.class - [JAR]

├─ org.biojava.bio.NoneCollectionConstraint.class - [JAR]

├─ org.biojava.bio.NonePropertyConstraint.class - [JAR]

├─ org.biojava.bio.OverlayAnnotation.class - [JAR]

├─ org.biojava.bio.PropertyConstraint.class - [JAR]

├─ org.biojava.bio.SimpleAnnotation.class - [JAR]

├─ org.biojava.bio.SmallAnnotation.class - [JAR]

htsjdk.samtools.cram.compression.rans

├─ htsjdk.samtools.cram.compression.rans.ArithmeticDecoder.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.Constants.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.D04.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.D14.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.E04.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.E14.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.FC.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.Frequencies.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.RANS.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.RANSDecodingSymbol.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.RANSEncodingSymbol.class - [JAR]

├─ htsjdk.samtools.cram.compression.rans.Utils.class - [JAR]

org.apache.commons.compress.harmony.unpack200.bytecode

├─ org.apache.commons.compress.harmony.unpack200.bytecode.AnnotationDefaultAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.AnnotationsAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.Attribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.BCIRenumberedAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ByteCode.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPClass.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPConstant.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPConstantNumber.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPDouble.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPField.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPFieldRef.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPFloat.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPInteger.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPInterfaceMethodRef.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPLong.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPMember.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPMethod.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPMethodRef.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPNameAndType.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPRef.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPString.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CPUTF8.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ClassConstantPool.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ClassFile.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ClassFileEntry.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.CodeAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ConstantPoolEntry.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ConstantValueAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.DeprecatedAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.EnclosingMethodAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ExceptionTableEntry.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.ExceptionsAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.InnerClassesAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.LineNumberTableAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.LocalVariableTableAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.LocalVariableTypeTableAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.NewAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.OperandManager.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.RuntimeVisibleorInvisibleAnnotationsAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.RuntimeVisibleorInvisibleParameterAnnotationsAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.SignatureAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.SourceFileAttribute.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Booleans.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Bytes.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Chars.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Doubles.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.DoublesMethodsForWeb.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Floats.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.FloatsMethodsForWeb.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ImmutableDoubleArray.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ImmutableIntArray.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ImmutableLongArray.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Ints.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.IntsMethodsForWeb.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Longs.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ParseRequest.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Platform.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Primitives.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.Shorts.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.ShortsMethodsForWeb.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.SignedBytes.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.UnsignedBytes.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.UnsignedInteger.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.UnsignedInts.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.UnsignedLong.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.UnsignedLongs.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.primitives.package-info.class - [JAR]

org.dishevelled.bio.annotation

├─ org.dishevelled.bio.annotation.AnnotatedRecord.class - [JAR]

├─ org.dishevelled.bio.annotation.Annotation.class - [JAR]

├─ org.dishevelled.bio.annotation.Annotations.class - [JAR]

org.tukaani.xz.index

├─ org.tukaani.xz.index.BlockInfo.class - [JAR]

├─ org.tukaani.xz.index.IndexBase.class - [JAR]

├─ org.tukaani.xz.index.IndexDecoder.class - [JAR]

├─ org.tukaani.xz.index.IndexEncoder.class - [JAR]

├─ org.tukaani.xz.index.IndexHash.class - [JAR]

├─ org.tukaani.xz.index.IndexRecord.class - [JAR]

htsjdk.samtools.cram.structure.block

├─ htsjdk.samtools.cram.structure.block.Block.class - [JAR]

├─ htsjdk.samtools.cram.structure.block.BlockCompressionMethod.class - [JAR]

├─ htsjdk.samtools.cram.structure.block.BlockContentType.class - [JAR]

htsjdk.tribble.readers

├─ htsjdk.tribble.readers.AsciiLineReader.class - [JAR]

├─ htsjdk.tribble.readers.AsciiLineReaderIterator.class - [JAR]

├─ htsjdk.tribble.readers.BlockCompressedAsciiLineReader.class - [JAR]

├─ htsjdk.tribble.readers.LineIterator.class - [JAR]

├─ htsjdk.tribble.readers.LineIteratorImpl.class - [JAR]

├─ htsjdk.tribble.readers.LineReader.class - [JAR]

├─ htsjdk.tribble.readers.LongLineBufferedReader.class - [JAR]

├─ htsjdk.tribble.readers.Positional.class - [JAR]

├─ htsjdk.tribble.readers.PositionalBufferedStream.class - [JAR]

├─ htsjdk.tribble.readers.SynchronousLineReader.class - [JAR]

├─ htsjdk.tribble.readers.TabixIteratorLineReader.class - [JAR]

├─ htsjdk.tribble.readers.TabixReader.class - [JAR]

htsjdk.tribble.bed

├─ htsjdk.tribble.bed.BEDCodec.class - [JAR]

├─ htsjdk.tribble.bed.BEDFeature.class - [JAR]

├─ htsjdk.tribble.bed.FullBEDFeature.class - [JAR]

├─ htsjdk.tribble.bed.SimpleBEDFeature.class - [JAR]

org.biojavax.bio.db

├─ org.biojavax.bio.db.AbstractBioEntryDB.class - [JAR]

├─ org.biojavax.bio.db.AbstractRichSequenceDB.class - [JAR]

├─ org.biojavax.bio.db.BioEntryDB.class - [JAR]

├─ org.biojavax.bio.db.BioEntryDBLite.class - [JAR]

├─ org.biojavax.bio.db.HashBioEntryDB.class - [JAR]

├─ org.biojavax.bio.db.HashRichSequenceDB.class - [JAR]

├─ org.biojavax.bio.db.RichSequenceDB.class - [JAR]

├─ org.biojavax.bio.db.RichSequenceDBLite.class - [JAR]

org.biojavax.bio.taxa.io

├─ org.biojavax.bio.taxa.io.NCBITaxonomyLoader.class - [JAR]

├─ org.biojavax.bio.taxa.io.SimpleNCBITaxonomyLoader.class - [JAR]

org.checkerframework.checker.tainting.qual

├─ org.checkerframework.checker.tainting.qual.PolyTainted.class - [JAR]

├─ org.checkerframework.checker.tainting.qual.Tainted.class - [JAR]

├─ org.checkerframework.checker.tainting.qual.Untainted.class - [JAR]

org.tukaani.xz

├─ org.tukaani.xz.ARMOptions.class - [JAR]

├─ org.tukaani.xz.ARMThumbOptions.class - [JAR]

├─ org.tukaani.xz.ArrayCache.class - [JAR]

├─ org.tukaani.xz.BCJCoder.class - [JAR]

├─ org.tukaani.xz.BCJDecoder.class - [JAR]

├─ org.tukaani.xz.BCJEncoder.class - [JAR]

├─ org.tukaani.xz.BCJOptions.class - [JAR]

├─ org.tukaani.xz.BasicArrayCache.class - [JAR]

├─ org.tukaani.xz.BlockInputStream.class - [JAR]

├─ org.tukaani.xz.BlockOutputStream.class - [JAR]

├─ org.tukaani.xz.CloseIgnoringInputStream.class - [JAR]

├─ org.tukaani.xz.CorruptedInputException.class - [JAR]

├─ org.tukaani.xz.CountingInputStream.class - [JAR]

├─ org.tukaani.xz.CountingOutputStream.class - [JAR]

├─ org.tukaani.xz.DeltaCoder.class - [JAR]

├─ org.tukaani.xz.DeltaDecoder.class - [JAR]

├─ org.tukaani.xz.DeltaEncoder.class - [JAR]

├─ org.tukaani.xz.DeltaInputStream.class - [JAR]

├─ org.tukaani.xz.DeltaOptions.class - [JAR]

├─ org.tukaani.xz.DeltaOutputStream.class - [JAR]

├─ org.tukaani.xz.FilterCoder.class - [JAR]

├─ org.tukaani.xz.FilterDecoder.class - [JAR]

├─ org.tukaani.xz.FilterEncoder.class - [JAR]

├─ org.tukaani.xz.FilterOptions.class - [JAR]

├─ org.tukaani.xz.FinishableOutputStream.class - [JAR]

├─ org.tukaani.xz.FinishableWrapperOutputStream.class - [JAR]

├─ org.tukaani.xz.IA64Options.class - [JAR]

├─ org.tukaani.xz.IndexIndicatorException.class - [JAR]

├─ org.tukaani.xz.LZMA2Coder.class - [JAR]

├─ org.tukaani.xz.LZMA2Decoder.class - [JAR]

├─ org.tukaani.xz.LZMA2Encoder.class - [JAR]

├─ org.tukaani.xz.LZMA2InputStream.class - [JAR]

├─ org.tukaani.xz.LZMA2Options.class - [JAR]

├─ org.tukaani.xz.LZMA2OutputStream.class - [JAR]

├─ org.tukaani.xz.LZMAInputStream.class - [JAR]

├─ org.tukaani.xz.LZMAOutputStream.class - [JAR]

├─ org.tukaani.xz.MemoryLimitException.class - [JAR]

├─ org.tukaani.xz.PowerPCOptions.class - [JAR]

├─ org.tukaani.xz.RawCoder.class - [JAR]

├─ org.tukaani.xz.ResettableArrayCache.class - [JAR]

├─ org.tukaani.xz.SPARCOptions.class - [JAR]

├─ org.tukaani.xz.SeekableFileInputStream.class - [JAR]

├─ org.tukaani.xz.SeekableInputStream.class - [JAR]

├─ org.tukaani.xz.SeekableXZInputStream.class - [JAR]

├─ org.tukaani.xz.SimpleInputStream.class - [JAR]

├─ org.tukaani.xz.SimpleOutputStream.class - [JAR]

├─ org.tukaani.xz.SingleXZInputStream.class - [JAR]

├─ org.tukaani.xz.UncompressedLZMA2OutputStream.class - [JAR]

├─ org.tukaani.xz.UnsupportedOptionsException.class - [JAR]

├─ org.tukaani.xz.X86Options.class - [JAR]

├─ org.tukaani.xz.XZ.class - [JAR]

├─ org.tukaani.xz.XZFormatException.class - [JAR]

├─ org.tukaani.xz.XZIOException.class - [JAR]

├─ org.tukaani.xz.XZInputStream.class - [JAR]

├─ org.tukaani.xz.XZOutputStream.class - [JAR]

htsjdk.samtools.cram.common

├─ htsjdk.samtools.cram.common.CRAMVersion.class - [JAR]

├─ htsjdk.samtools.cram.common.CramVersions.class - [JAR]

├─ htsjdk.samtools.cram.common.MutableInt.class - [JAR]

org.checkerframework.common.returnsreceiver.qual

├─ org.checkerframework.common.returnsreceiver.qual.BottomThis.class - [JAR]

├─ org.checkerframework.common.returnsreceiver.qual.This.class - [JAR]

├─ org.checkerframework.common.returnsreceiver.qual.UnknownThis.class - [JAR]

htsjdk.samtools.cram.encoding

├─ htsjdk.samtools.cram.encoding.ByteArrayLenCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.ByteArrayLenEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.CRAMCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.CRAMEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.EncodingFactory.class - [JAR]

org.apache.commons.compress.compressors.lzw

├─ org.apache.commons.compress.compressors.lzw.LZWInputStream.class - [JAR]

org.apache.commons.compress.archivers.sevenz

├─ org.apache.commons.compress.archivers.sevenz.AES256SHA256Decoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Archive.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.BindPair.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.BoundedSeekableByteChannelInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.CLI.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Coder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.CoderBase.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Coders.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.DeltaDecoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.Folder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.LZMA2Decoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.LZMADecoder.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.NID.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZFile.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZFileOptions.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZMethod.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZMethodConfiguration.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SevenZOutputFile.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.StartHeader.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.StreamMap.class - [JAR]

├─ org.apache.commons.compress.archivers.sevenz.SubStreamsInfo.class - [JAR]

org.biojava.bio.proteomics

├─ org.biojava.bio.proteomics.Digest.class - [JAR]

├─ org.biojava.bio.proteomics.IsoelectricPointCalc.class - [JAR]

├─ org.biojava.bio.proteomics.MassCalc.class - [JAR]

├─ org.biojava.bio.proteomics.Protease.class - [JAR]

├─ org.biojava.bio.proteomics.ProteaseManager.class - [JAR]

├─ org.biojava.bio.proteomics.StructureTools.class - [JAR]

org.apache.commons.compress.archivers.cpio

├─ org.apache.commons.compress.archivers.cpio.CpioArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.cpio.CpioUtil.class - [JAR]

org.biojava.bio.program.abi

├─ org.biojava.bio.program.abi.ABIFChromatogram.class - [JAR]

├─ org.biojava.bio.program.abi.ABIFParser.class - [JAR]

├─ org.biojava.bio.program.abi.ABITools.class - [JAR]

├─ org.biojava.bio.program.abi.ABITrace.class - [JAR]

org.biojava.utils.walker

├─ org.biojava.utils.walker.Visitor.class - [JAR]

├─ org.biojava.utils.walker.Walker.class - [JAR]

├─ org.biojava.utils.walker.WalkerFactory.class - [JAR]

org.biojava.bio.seq.db.biofetch

├─ org.biojava.bio.seq.db.biofetch.BioFetchSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.biofetch.BioFetchSequenceDBProvider.class - [JAR]

htsjdk.variant.variantcontext

├─ htsjdk.variant.variantcontext.Allele.class - [JAR]

├─ htsjdk.variant.variantcontext.CommonInfo.class - [JAR]

├─ htsjdk.variant.variantcontext.FastGenotype.class - [JAR]

├─ htsjdk.variant.variantcontext.Genotype.class - [JAR]

├─ htsjdk.variant.variantcontext.GenotypeBuilder.class - [JAR]

├─ htsjdk.variant.variantcontext.GenotypeJEXLContext.class - [JAR]

├─ htsjdk.variant.variantcontext.GenotypeLikelihoods.class - [JAR]

├─ htsjdk.variant.variantcontext.GenotypeNumLikelihoodsCache.class - [JAR]

├─ htsjdk.variant.variantcontext.GenotypeType.class - [JAR]

├─ htsjdk.variant.variantcontext.GenotypesContext.class - [JAR]

├─ htsjdk.variant.variantcontext.JEXLMap.class - [JAR]

├─ htsjdk.variant.variantcontext.JexlMissingValueTreatment.class - [JAR]

├─ htsjdk.variant.variantcontext.LazyGenotypesContext.class - [JAR]

├─ htsjdk.variant.variantcontext.StructuralVariantType.class - [JAR]

├─ htsjdk.variant.variantcontext.VariantContext.class - [JAR]

├─ htsjdk.variant.variantcontext.VariantContextBuilder.class - [JAR]

├─ htsjdk.variant.variantcontext.VariantContextComparator.class - [JAR]

├─ htsjdk.variant.variantcontext.VariantContextUtils.class - [JAR]

├─ htsjdk.variant.variantcontext.VariantJEXLContext.class - [JAR]

org.apache.commons.compress.archivers.jar

├─ org.apache.commons.compress.archivers.jar.JarArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.jar.JarArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.jar.JarArchiveOutputStream.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractIndexedListIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractMapBasedMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractMapBasedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractMapEntry.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractNavigableMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractRangeSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractSequentialIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractSortedKeySortedSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractSortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractSortedSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AbstractTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.AllEqualOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ArrayListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ArrayListMultimapGwtSerializationDependencies.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ArrayTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.BaseImmutableMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.BiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.BoundType.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ByFunctionOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CartesianList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ClassToInstanceMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CollectCollectors.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CollectPreconditions.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CollectSpliterators.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Collections2.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CompactHashMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CompactHashSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CompactHashing.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CompactLinkedHashMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CompactLinkedHashSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ComparatorOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Comparators.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ComparisonChain.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.CompoundOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ComputationException.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ConcurrentHashMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ConsumingQueueIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ContiguousSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Count.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Cut.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.DenseImmutableTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.DescendingImmutableSortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.DescendingImmutableSortedSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.DescendingMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.DiscreteDomain.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EmptyContiguousSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EmptyImmutableListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EmptyImmutableSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EnumBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EnumHashBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EnumMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.EvictingQueue.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ExplicitOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredEntryMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredEntrySetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredKeyListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredKeyMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredKeySetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredMultimapValues.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FilteredSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.FluentIterable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingBlockingDeque.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingCollection.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingConcurrentMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingDeque.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingImmutableCollection.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingImmutableList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingImmutableMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingImmutableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingListIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingMapEntry.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingNavigableMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingNavigableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingObject.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingQueue.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingSortedMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingSortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingSortedSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingSortedSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ForwardingTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.GeneralRange.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.GwtTransient.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.HashBasedTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.HashBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.HashMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.HashMultimapGwtSerializationDependencies.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.HashMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Hashing.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableAsList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableBiMapFauxverideShim.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableClassToInstanceMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableCollection.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableEntry.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableEnumMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableEnumSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMapEntry.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMapEntrySet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMapKeySet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMapValues.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableMultisetGwtSerializationDependencies.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableRangeMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableRangeSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedAsList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedMapFauxverideShim.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedMultisetFauxverideShim.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableSortedSetFauxverideShim.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ImmutableTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.IndexedImmutableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Interner.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Interners.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Iterables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Iterators.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.JdkBackedImmutableBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.JdkBackedImmutableMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.JdkBackedImmutableMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.JdkBackedImmutableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.LexicographicalOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.LinkedHashMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.LinkedHashMultimapGwtSerializationDependencies.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.LinkedHashMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.LinkedListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ListMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Lists.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MapDifference.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MapMaker.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MapMakerInternalMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Maps.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MinMaxPriorityQueue.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MoreCollectors.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Multimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MultimapBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Multimaps.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Multiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Multisets.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.MutableClassToInstanceMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.NaturalOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.NullnessCasts.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.NullsFirstOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.NullsLastOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ObjectArrays.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Ordering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.PeekingIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Platform.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Queues.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Range.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RangeGwtSerializationDependencies.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RangeMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RangeSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularContiguousSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableAsList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableSortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableSortedSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RegularImmutableTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ReverseNaturalOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.ReverseOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.RowSortedTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Serialization.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Sets.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SingletonImmutableBiMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SingletonImmutableList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SingletonImmutableSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SingletonImmutableTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedIterable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedIterables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedLists.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedMapDifference.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedMultisetBridge.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedMultisets.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SortedSetMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.SparseImmutableTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.StandardRowSortedTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.StandardTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Streams.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Synchronized.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Table.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TableCollectors.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.Tables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TopKSelector.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TransformedIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TransformedListIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TreeBasedTable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TreeMultimap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TreeMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TreeRangeMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TreeRangeSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.TreeTraverser.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.UnmodifiableIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.UnmodifiableListIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.UnmodifiableSortedMultiset.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.UsingToStringOrdering.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.collect.package-info.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.AppendableWriter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.BaseEncoding.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ByteArrayDataInput.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ByteArrayDataOutput.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ByteProcessor.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ByteSink.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ByteSource.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ByteStreams.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.CharSequenceReader.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.CharSink.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.CharSource.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.CharStreams.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.Closeables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.Closer.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.CountingInputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.CountingOutputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.FileBackedOutputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.FileWriteMode.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.Files.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.Flushables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.InsecureRecursiveDeleteException.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.Java8Compatibility.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.LineBuffer.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.LineProcessor.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.LineReader.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.LittleEndianDataInputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.LittleEndianDataOutputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.MoreFiles.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.MultiInputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.MultiReader.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.PatternFilenameFilter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.ReaderInputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.RecursiveDeleteOption.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.Resources.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.io.package-info.class - [JAR]

org.checkerframework.checker.signedness.qual

├─ org.checkerframework.checker.signedness.qual.PolySigned.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.Signed.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignedPositive.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignedPositiveFromUnsigned.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignednessBottom.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.SignednessGlb.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.UnknownSignedness.class - [JAR]

├─ org.checkerframework.checker.signedness.qual.Unsigned.class - [JAR]

org.biojava.utils.stax

├─ org.biojava.utils.stax.BooleanElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.ByteElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.CharElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.DelegationManager.class - [JAR]

├─ org.biojava.utils.stax.DoubleElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.FloatElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.IntElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.LongElementHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.SAX2StAXAdaptor.class - [JAR]

├─ org.biojava.utils.stax.StAXContentHandler.class - [JAR]

├─ org.biojava.utils.stax.StAXContentHandlerBase.class - [JAR]

├─ org.biojava.utils.stax.StringElementHandlerBase.class - [JAR]

org.checkerframework.common.util.report.qual

├─ org.checkerframework.common.util.report.qual.ReportCall.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportCreation.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportInherit.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportOverride.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportReadWrite.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportUnqualified.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportUse.class - [JAR]

├─ org.checkerframework.common.util.report.qual.ReportWrite.class - [JAR]

org.apache.commons.compress.compressors.brotli

├─ org.apache.commons.compress.compressors.brotli.BrotliCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.brotli.BrotliUtils.class - [JAR]

org.dishevelled.bio.compress.hdfs

├─ org.dishevelled.bio.compress.hdfs.CompressBed.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressFasta.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressFastq.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressGaf.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressGfa1.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressGfa2.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressGff3.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressPaf.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressSam.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.CompressVcf.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.HdfsReaders.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.HdfsWriters.class - [JAR]

org.apache.commons.logging

├─ org.apache.commons.logging.Log.class - [JAR]

├─ org.apache.commons.logging.LogConfigurationException.class - [JAR]

├─ org.apache.commons.logging.LogFactory.class - [JAR]

├─ org.apache.commons.logging.LogSource.class - [JAR]

org.checkerframework.common.subtyping.qual

├─ org.checkerframework.common.subtyping.qual.Bottom.class - [JAR]

├─ org.checkerframework.common.subtyping.qual.Unqualified.class - [JAR]

org.apache.commons.compress.changes

├─ org.apache.commons.compress.changes.Change.class - [JAR]

├─ org.apache.commons.compress.changes.ChangeSet.class - [JAR]

├─ org.apache.commons.compress.changes.ChangeSetPerformer.class - [JAR]

├─ org.apache.commons.compress.changes.ChangeSetResults.class - [JAR]

org.checkerframework.dataflow.qual

├─ org.checkerframework.dataflow.qual.Deterministic.class - [JAR]

├─ org.checkerframework.dataflow.qual.Pure.class - [JAR]

├─ org.checkerframework.dataflow.qual.SideEffectFree.class - [JAR]

├─ org.checkerframework.dataflow.qual.TerminatesExecution.class - [JAR]

org.apache.commons.compress.compressors.gzip

├─ org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.gzip.GzipCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.gzip.GzipParameters.class - [JAR]

├─ org.apache.commons.compress.compressors.gzip.GzipUtils.class - [JAR]

com.google.j2objc.annotations

├─ com.google.j2objc.annotations.AutoreleasePool.class - [JAR]

├─ com.google.j2objc.annotations.J2ObjCIncompatible.class - [JAR]

├─ com.google.j2objc.annotations.LoopTranslation.class - [JAR]

├─ com.google.j2objc.annotations.ObjectiveCName.class - [JAR]

├─ com.google.j2objc.annotations.Property.class - [JAR]

├─ com.google.j2objc.annotations.ReflectionSupport.class - [JAR]

├─ com.google.j2objc.annotations.RetainedLocalRef.class - [JAR]

├─ com.google.j2objc.annotations.RetainedWith.class - [JAR]

├─ com.google.j2objc.annotations.Weak.class - [JAR]

├─ com.google.j2objc.annotations.WeakOuter.class - [JAR]

org.biojava.bio.symbol

├─ org.biojava.bio.symbol.AbstractAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.AbstractLocation.class - [JAR]

├─ org.biojava.bio.symbol.AbstractLocationDecorator.class - [JAR]

├─ org.biojava.bio.symbol.AbstractManyToOneTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.AbstractRangeLocation.class - [JAR]

├─ org.biojava.bio.symbol.AbstractReversibleTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.AbstractSimpleBasisSymbol.class - [JAR]

├─ org.biojava.bio.symbol.AbstractSymbol.class - [JAR]

├─ org.biojava.bio.symbol.AbstractSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.AbstractTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.Alphabet.class - [JAR]

├─ org.biojava.bio.symbol.AlphabetIndex.class - [JAR]

├─ org.biojava.bio.symbol.AlphabetManager.class - [JAR]

├─ org.biojava.bio.symbol.AtomicSymbol.class - [JAR]

├─ org.biojava.bio.symbol.BasisSymbol.class - [JAR]

├─ org.biojava.bio.symbol.BetweenLocation.class - [JAR]

├─ org.biojava.bio.symbol.BetweenLocationTools.class - [JAR]

├─ org.biojava.bio.symbol.ChunkedSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.CircularLocation.class - [JAR]

├─ org.biojava.bio.symbol.CircularLocationTools.class - [JAR]

├─ org.biojava.bio.symbol.CodonPref.class - [JAR]

├─ org.biojava.bio.symbol.CodonPrefFilter.class - [JAR]

├─ org.biojava.bio.symbol.CodonPrefTools.class - [JAR]

├─ org.biojava.bio.symbol.CompoundLocation.class - [JAR]

├─ org.biojava.bio.symbol.CrossProductAlphabetIndex.class - [JAR]

├─ org.biojava.bio.symbol.DNAAmbPack.class - [JAR]

├─ org.biojava.bio.symbol.DNANoAmbPack.class - [JAR]

├─ org.biojava.bio.symbol.DoubleAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.DummySymbolList.class - [JAR]

├─ org.biojava.bio.symbol.Edit.class - [JAR]

├─ org.biojava.bio.symbol.EmptyAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.EmptyLocation.class - [JAR]

├─ org.biojava.bio.symbol.EmptySymbolList.class - [JAR]

├─ org.biojava.bio.symbol.FiniteAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.FullDnaAlphabetIndex.class - [JAR]

├─ org.biojava.bio.symbol.FundamentalAtomicSymbol.class - [JAR]

├─ org.biojava.bio.symbol.FuzzyLocation.class - [JAR]

├─ org.biojava.bio.symbol.FuzzyPointLocation.class - [JAR]

├─ org.biojava.bio.symbol.GappedSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.HashedAlphabetIndex.class - [JAR]

├─ org.biojava.bio.symbol.IllegalAlphabetException.class - [JAR]

├─ org.biojava.bio.symbol.IllegalSymbolException.class - [JAR]

├─ org.biojava.bio.symbol.IndexedNoAmbPack.class - [JAR]

├─ org.biojava.bio.symbol.InfiniteCrossProductAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.IntegerAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.LinearAlphabetIndex.class - [JAR]

├─ org.biojava.bio.symbol.Location.class - [JAR]

├─ org.biojava.bio.symbol.LocationComparator.class - [JAR]

├─ org.biojava.bio.symbol.LocationTools.class - [JAR]

├─ org.biojava.bio.symbol.ManyToOneTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.MergeLocation.class - [JAR]

├─ org.biojava.bio.symbol.MotifTools.class - [JAR]

├─ org.biojava.bio.symbol.OrderNSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.PackedSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.PackedSymbolListFactory.class - [JAR]

├─ org.biojava.bio.symbol.Packing.class - [JAR]

├─ org.biojava.bio.symbol.PackingFactory.class - [JAR]

├─ org.biojava.bio.symbol.PointLocation.class - [JAR]

├─ org.biojava.bio.symbol.RangeLocation.class - [JAR]

├─ org.biojava.bio.symbol.RelabeledAlignment.class - [JAR]

├─ org.biojava.bio.symbol.ReverseSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.ReversibleTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.SimpleAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.SimpleAtomicSymbol.class - [JAR]

├─ org.biojava.bio.symbol.SimpleBasisSymbol.class - [JAR]

├─ org.biojava.bio.symbol.SimpleCodonPref.class - [JAR]

├─ org.biojava.bio.symbol.SimpleCrossProductAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.SimpleGappedSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.SimpleGeneticCodeTable.class - [JAR]

├─ org.biojava.bio.symbol.SimpleManyToOneTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.SimpleReversibleTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.SimpleSymbol.class - [JAR]

├─ org.biojava.bio.symbol.SimpleSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.SimpleSymbolListFactory.class - [JAR]

├─ org.biojava.bio.symbol.SimpleSymbolPropertyTable.class - [JAR]

├─ org.biojava.bio.symbol.SimpleTranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.SimpleWobbleDistribution.class - [JAR]

├─ org.biojava.bio.symbol.SingletonAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.SoftMaskedAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.SparseCrossProductAlphabet.class - [JAR]

├─ org.biojava.bio.symbol.SubList.class - [JAR]

├─ org.biojava.bio.symbol.SuffixTree.class - [JAR]

├─ org.biojava.bio.symbol.Symbol.class - [JAR]

├─ org.biojava.bio.symbol.SymbolList.class - [JAR]

├─ org.biojava.bio.symbol.SymbolListFactory.class - [JAR]

├─ org.biojava.bio.symbol.SymbolListViews.class - [JAR]

├─ org.biojava.bio.symbol.SymbolPropertyTable.class - [JAR]

├─ org.biojava.bio.symbol.TranslatedSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.TranslationTable.class - [JAR]

├─ org.biojava.bio.symbol.UkkonenSuffixTree.class - [JAR]

├─ org.biojava.bio.symbol.WindowedSymbolList.class - [JAR]

├─ org.biojava.bio.symbol.WobbleDistribution.class - [JAR]

htsjdk.samtools.reference

├─ htsjdk.samtools.reference.AbstractFastaSequenceFile.class - [JAR]

├─ htsjdk.samtools.reference.AbstractIndexedFastaSequenceFile.class - [JAR]

├─ htsjdk.samtools.reference.BlockCompressedIndexedFastaSequenceFile.class - [JAR]

├─ htsjdk.samtools.reference.FastaReferenceWriter.class - [JAR]

├─ htsjdk.samtools.reference.FastaReferenceWriterBuilder.class - [JAR]

├─ htsjdk.samtools.reference.FastaSequenceFile.class - [JAR]

├─ htsjdk.samtools.reference.FastaSequenceIndex.class - [JAR]

├─ htsjdk.samtools.reference.FastaSequenceIndexCreator.class - [JAR]

├─ htsjdk.samtools.reference.FastaSequenceIndexEntry.class - [JAR]

├─ htsjdk.samtools.reference.IndexedFastaSequenceFile.class - [JAR]

├─ htsjdk.samtools.reference.ReferenceSequence.class - [JAR]

├─ htsjdk.samtools.reference.ReferenceSequenceFile.class - [JAR]

├─ htsjdk.samtools.reference.ReferenceSequenceFileFactory.class - [JAR]

├─ htsjdk.samtools.reference.ReferenceSequenceFileWalker.class - [JAR]

├─ htsjdk.samtools.reference.SamLocusAndReferenceIterator.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.xml

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.xml.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.xml.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.xml.XmlEscapers.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.xml.package-info.class - [JAR]

org.dishevelled.bio.feature.bed

├─ org.dishevelled.bio.feature.bed.BedFormat.class - [JAR]

├─ org.dishevelled.bio.feature.bed.BedListener.class - [JAR]

├─ org.dishevelled.bio.feature.bed.BedReader.class - [JAR]

├─ org.dishevelled.bio.feature.bed.BedRecord.class - [JAR]

├─ org.dishevelled.bio.feature.bed.BedWriter.class - [JAR]

org.biojavax.ga.impl

├─ org.biojavax.ga.impl.AbstractGeneticAlgorithm.class - [JAR]

├─ org.biojavax.ga.impl.AbstractOrganism.class - [JAR]

├─ org.biojavax.ga.impl.AbstractPopulation.class - [JAR]

├─ org.biojavax.ga.impl.SimpleGeneticAlgorithm.class - [JAR]

├─ org.biojavax.ga.impl.SimpleOrganism.class - [JAR]

├─ org.biojavax.ga.impl.SimplePopulation.class - [JAR]

org.dishevelled.functor

├─ org.dishevelled.functor.BinaryFunction.class - [JAR]

├─ org.dishevelled.functor.BinaryPredicate.class - [JAR]

├─ org.dishevelled.functor.BinaryProcedure.class - [JAR]

├─ org.dishevelled.functor.Function.class - [JAR]

├─ org.dishevelled.functor.NaryFunction.class - [JAR]

├─ org.dishevelled.functor.NaryPredicate.class - [JAR]

├─ org.dishevelled.functor.NaryProcedure.class - [JAR]

├─ org.dishevelled.functor.Predicate.class - [JAR]

├─ org.dishevelled.functor.Procedure.class - [JAR]

├─ org.dishevelled.functor.QuaternaryFunction.class - [JAR]

├─ org.dishevelled.functor.QuaternaryPredicate.class - [JAR]

├─ org.dishevelled.functor.QuaternaryProcedure.class - [JAR]

├─ org.dishevelled.functor.TernaryFunction.class - [JAR]

├─ org.dishevelled.functor.TernaryPredicate.class - [JAR]

├─ org.dishevelled.functor.TernaryProcedure.class - [JAR]

├─ org.dishevelled.functor.UnaryFunction.class - [JAR]

├─ org.dishevelled.functor.UnaryPredicate.class - [JAR]

├─ org.dishevelled.functor.UnaryProcedure.class - [JAR]

org.biojava.utils.bytecode

├─ org.biojava.utils.bytecode.BranchFixup.class - [JAR]

├─ org.biojava.utils.bytecode.ByteCode.class - [JAR]

├─ org.biojava.utils.bytecode.ByteInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.ChildContext.class - [JAR]

├─ org.biojava.utils.bytecode.ClassInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.CodeClass.class - [JAR]

├─ org.biojava.utils.bytecode.CodeContext.class - [JAR]

├─ org.biojava.utils.bytecode.CodeException.class - [JAR]

├─ org.biojava.utils.bytecode.CodeField.class - [JAR]

├─ org.biojava.utils.bytecode.CodeGenerator.class - [JAR]

├─ org.biojava.utils.bytecode.CodeMethod.class - [JAR]

├─ org.biojava.utils.bytecode.CodeUtils.class - [JAR]

├─ org.biojava.utils.bytecode.ConstantPool.class - [JAR]

├─ org.biojava.utils.bytecode.DoubleInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.ExceptionMemento.class - [JAR]

├─ org.biojava.utils.bytecode.FieldInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.FloatConstantInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.GeneratedClassLoader.class - [JAR]

├─ org.biojava.utils.bytecode.GeneratedCodeClass.class - [JAR]

├─ org.biojava.utils.bytecode.GeneratedCodeMethod.class - [JAR]

├─ org.biojava.utils.bytecode.IfExpression.class - [JAR]

├─ org.biojava.utils.bytecode.Instruction.class - [JAR]

├─ org.biojava.utils.bytecode.InstructionVector.class - [JAR]

├─ org.biojava.utils.bytecode.IntConstantInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.IntrospectedCodeClass.class - [JAR]

├─ org.biojava.utils.bytecode.IntrospectedCodeConstructor.class - [JAR]

├─ org.biojava.utils.bytecode.IntrospectedCodeMethod.class - [JAR]

├─ org.biojava.utils.bytecode.Label.class - [JAR]

├─ org.biojava.utils.bytecode.LabelInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.LocalVariable.class - [JAR]

├─ org.biojava.utils.bytecode.LocalVariableInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.LongConstantInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.MarkLabel.class - [JAR]

├─ org.biojava.utils.bytecode.MethodInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.MethodRootContext.class - [JAR]

├─ org.biojava.utils.bytecode.NoOperandsInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.OutstandingReference.class - [JAR]

├─ org.biojava.utils.bytecode.PParametricCodeGenerator.class - [JAR]

├─ org.biojava.utils.bytecode.ParametricCodeGenerator.class - [JAR]

├─ org.biojava.utils.bytecode.ParametricType.class - [JAR]

├─ org.biojava.utils.bytecode.ParentContext.class - [JAR]

├─ org.biojava.utils.bytecode.ShortInstruction.class - [JAR]

├─ org.biojava.utils.bytecode.SimpleReference.class - [JAR]

├─ org.biojava.utils.bytecode.StringConstantInstruction.class - [JAR]

htsjdk.samtools.cram.digest

├─ htsjdk.samtools.cram.digest.AbstractSerialDigest.class - [JAR]

├─ htsjdk.samtools.cram.digest.ByteSumCombine.class - [JAR]

├─ htsjdk.samtools.cram.digest.Combine.class - [JAR]

├─ htsjdk.samtools.cram.digest.ContentDigests.class - [JAR]

├─ htsjdk.samtools.cram.digest.Crc32Hasher.class - [JAR]

├─ htsjdk.samtools.cram.digest.IntegerSumCombine.class - [JAR]

├─ htsjdk.samtools.cram.digest.MessageDigestHasher.class - [JAR]

├─ htsjdk.samtools.cram.digest.SERIES.class - [JAR]

org.biojava.bio.taxa

├─ org.biojava.bio.taxa.AbstractTaxon.class - [JAR]

├─ org.biojava.bio.taxa.CircularReferenceException.class - [JAR]

├─ org.biojava.bio.taxa.EbiFormat.class - [JAR]

├─ org.biojava.bio.taxa.SimpleTaxon.class - [JAR]

├─ org.biojava.bio.taxa.SimpleTaxonFactory.class - [JAR]

├─ org.biojava.bio.taxa.Taxon.class - [JAR]

├─ org.biojava.bio.taxa.TaxonFactory.class - [JAR]

├─ org.biojava.bio.taxa.TaxonParser.class - [JAR]

├─ org.biojava.bio.taxa.WeakTaxon.class - [JAR]

├─ org.biojava.bio.taxa.WeakTaxonFactory.class - [JAR]

com.google.errorprone.annotations

├─ com.google.errorprone.annotations.CanIgnoreReturnValue.class - [JAR]

├─ com.google.errorprone.annotations.CheckReturnValue.class - [JAR]

├─ com.google.errorprone.annotations.CompatibleWith.class - [JAR]

├─ com.google.errorprone.annotations.CompileTimeConstant.class - [JAR]

├─ com.google.errorprone.annotations.DoNotCall.class - [JAR]

├─ com.google.errorprone.annotations.DoNotMock.class - [JAR]

├─ com.google.errorprone.annotations.ForOverride.class - [JAR]

├─ com.google.errorprone.annotations.FormatMethod.class - [JAR]

├─ com.google.errorprone.annotations.FormatString.class - [JAR]

├─ com.google.errorprone.annotations.Immutable.class - [JAR]

├─ com.google.errorprone.annotations.IncompatibleModifiers.class - [JAR]

├─ com.google.errorprone.annotations.InlineMe.class - [JAR]

├─ com.google.errorprone.annotations.InlineMeValidationDisabled.class - [JAR]

├─ com.google.errorprone.annotations.Keep.class - [JAR]

├─ com.google.errorprone.annotations.Modifier.class - [JAR]

├─ com.google.errorprone.annotations.MustBeClosed.class - [JAR]

├─ com.google.errorprone.annotations.NoAllocation.class - [JAR]

├─ com.google.errorprone.annotations.OverridingMethodsMustInvokeSuper.class - [JAR]

├─ com.google.errorprone.annotations.RequiredModifiers.class - [JAR]

├─ com.google.errorprone.annotations.RestrictedApi.class - [JAR]

├─ com.google.errorprone.annotations.SuppressPackageLocation.class - [JAR]

├─ com.google.errorprone.annotations.Var.class - [JAR]

org.apache.commons.compress.archivers.arj

├─ org.apache.commons.compress.archivers.arj.ArjArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.arj.ArjArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.arj.LocalFileHeader.class - [JAR]

├─ org.apache.commons.compress.archivers.arj.MainHeader.class - [JAR]

htsjdk.variant.utils

├─ htsjdk.variant.utils.BinomialCoefficientUtil.class - [JAR]

├─ htsjdk.variant.utils.GeneralUtils.class - [JAR]

├─ htsjdk.variant.utils.SAMSequenceDictionaryExtractor.class - [JAR]

├─ htsjdk.variant.utils.VCFHeaderReader.class - [JAR]

org.apache.commons.compress.compressors.lz4

├─ org.apache.commons.compress.compressors.lz4.BlockLZ4CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lz4.BlockLZ4CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lz4.FramedLZ4CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lz4.FramedLZ4CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.lz4.XXHash32.class - [JAR]

org.biojavax.ga

├─ org.biojavax.ga.GAStoppingCriteria.class - [JAR]

├─ org.biojavax.ga.GeneticAlgorithm.class - [JAR]

├─ org.biojavax.ga.Organism.class - [JAR]

├─ org.biojavax.ga.Population.class - [JAR]

htsjdk.variant.example

├─ htsjdk.variant.example.PrintVariantsExample.class - [JAR]

htsjdk.samtools.sra

├─ htsjdk.samtools.sra.ReferenceCache.class - [JAR]

├─ htsjdk.samtools.sra.SRAAccession.class - [JAR]

├─ htsjdk.samtools.sra.SRAAlignmentIterator.class - [JAR]

├─ htsjdk.samtools.sra.SRAIndexedSequenceFile.class - [JAR]

├─ htsjdk.samtools.sra.SRALazyRecord.class - [JAR]

├─ htsjdk.samtools.sra.SRAUnalignmentIterator.class - [JAR]

├─ htsjdk.samtools.sra.SRAUtils.class - [JAR]

org.checkerframework.common.aliasing.qual

├─ org.checkerframework.common.aliasing.qual.LeakedToResult.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.MaybeAliased.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.MaybeLeaked.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.NonLeaked.class - [JAR]

├─ org.checkerframework.common.aliasing.qual.Unique.class - [JAR]

org.biojava.utils.io

├─ org.biojava.utils.io.CachingInputStream.class - [JAR]

├─ org.biojava.utils.io.CountedBufferedReader.class - [JAR]

├─ org.biojava.utils.io.FlatFileCache.class - [JAR]

├─ org.biojava.utils.io.InputStreamProvider.class - [JAR]

├─ org.biojava.utils.io.LargeBuffer.class - [JAR]

├─ org.biojava.utils.io.RAF.class - [JAR]

├─ org.biojava.utils.io.RandomAccessReader.class - [JAR]

├─ org.biojava.utils.io.Seekable.class - [JAR]

├─ org.biojava.utils.io.SoftHashMap.class - [JAR]

├─ org.biojava.utils.io.UncompressInputStream.class - [JAR]

org.dishevelled.bio.assembly.gfa2

├─ org.dishevelled.bio.assembly.gfa2.Alignment.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Edge.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Fragment.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Gap.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Gfa2Adapter.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Gfa2Listener.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Gfa2Reader.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Gfa2Record.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Gfa2Writer.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Header.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Orientation.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Path.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Position.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Reference.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Segment.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa2.Set.class - [JAR]

org.apache.commons.compress.archivers.ar

├─ org.apache.commons.compress.archivers.ar.ArArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.ar.ArArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.ar.ArArchiveOutputStream.class - [JAR]

org.dishevelled.bio.assembly.gfa1

├─ org.dishevelled.bio.assembly.gfa1.Containment.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Gfa1Adapter.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Gfa1Listener.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Gfa1Reader.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Gfa1Record.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Gfa1Writer.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Header.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Link.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Orientation.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Path.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Reference.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Segment.class - [JAR]

├─ org.dishevelled.bio.assembly.gfa1.Traversal.class - [JAR]

org.biojava.bio.program.blast2html

├─ org.biojava.bio.program.blast2html.AbstractAlignmentStyler.class - [JAR]

├─ org.biojava.bio.program.blast2html.AlignmentMarker.class - [JAR]

├─ org.biojava.bio.program.blast2html.AlignmentStyler.class - [JAR]

├─ org.biojava.bio.program.blast2html.Blast2HTMLHandler.class - [JAR]

├─ org.biojava.bio.program.blast2html.BlastLikeAlignment.class - [JAR]

├─ org.biojava.bio.program.blast2html.BlastMatrixAlignmentStyler.class - [JAR]

├─ org.biojava.bio.program.blast2html.ColourCommand.class - [JAR]

├─ org.biojava.bio.program.blast2html.DatabaseURLGenerator.class - [JAR]

├─ org.biojava.bio.program.blast2html.DefaultURLGeneratorFactory.class - [JAR]

├─ org.biojava.bio.program.blast2html.DetailHit.class - [JAR]

├─ org.biojava.bio.program.blast2html.EbiDatabaseURLGenerator.class - [JAR]

├─ org.biojava.bio.program.blast2html.HSP.class - [JAR]

├─ org.biojava.bio.program.blast2html.HSPSummary.class - [JAR]

├─ org.biojava.bio.program.blast2html.HTMLRenderer.class - [JAR]

├─ org.biojava.bio.program.blast2html.HitDescription.class - [JAR]

├─ org.biojava.bio.program.blast2html.HitId.class - [JAR]

├─ org.biojava.bio.program.blast2html.HitSummary.class - [JAR]

├─ org.biojava.bio.program.blast2html.NcbiDatabaseURLGenerator.class - [JAR]

├─ org.biojava.bio.program.blast2html.Sequence.class - [JAR]

├─ org.biojava.bio.program.blast2html.SimpleAlignmentStyler.class - [JAR]

├─ org.biojava.bio.program.blast2html.URLGeneratorFactory.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.AbstractCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.AbstractLoadingCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.Cache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.CacheBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.CacheBuilderSpec.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.CacheLoader.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.CacheStats.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.ForwardingCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.ForwardingLoadingCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.LoadingCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.LocalCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.LongAddable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.LongAddables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.LongAdder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.ReferenceEntry.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.RemovalCause.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.RemovalListener.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.RemovalListeners.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.RemovalNotification.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.Striped64.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.Weigher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.cache.package-info.class - [JAR]

htsjdk.variant.variantcontext.filter

├─ htsjdk.variant.variantcontext.filter.CompoundFilter.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.FilteringIterator.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.FilteringVariantContextIterator.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.GenotypeQualityFilter.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.HeterozygosityFilter.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.JavascriptVariantFilter.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.PassingVariantFilter.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.SnpFilter.class - [JAR]

├─ htsjdk.variant.variantcontext.filter.VariantContextFilter.class - [JAR]

gov.nih.nlm.ncbi.ngs.error.cause

├─ gov.nih.nlm.ncbi.ngs.error.cause.ConnectionProblemCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.DownloadDisabledCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.InvalidLibraryCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.JvmErrorCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.LibraryLoadCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.OutdatedJarCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.PrereleaseReqLibCause.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.cause.UnsupportedArchCause.class - [JAR]

org.biojava.bio.seq.db.flat

├─ org.biojava.bio.seq.db.flat.FlatSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.flat.FlatSequenceDBProvider.class - [JAR]

org.biojavax.ga.util

├─ org.biojavax.ga.util.GATools.class - [JAR]

├─ org.biojavax.ga.util.WeightedSet.class - [JAR]

htsjdk.tribble.annotation

├─ htsjdk.tribble.annotation.Strand.class - [JAR]

org.xerial.snappy.pure

├─ org.xerial.snappy.pure.PureJavaSnappy.class - [JAR]

├─ org.xerial.snappy.pure.SnappyConstants.class - [JAR]

├─ org.xerial.snappy.pure.SnappyRawCompressor.class - [JAR]

├─ org.xerial.snappy.pure.SnappyRawDecompressor.class - [JAR]

├─ org.xerial.snappy.pure.UnsafeUtil.class - [JAR]

htsjdk.samtools.cram.encoding.core.experimental

├─ htsjdk.samtools.cram.encoding.core.experimental.ExperimentalCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.ExperimentalEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.GolombIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.GolombIntegerEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.GolombLongCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.GolombLongEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.GolombRiceIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.experimental.GolombRiceIntegerEncoding.class - [JAR]

org.checkerframework.checker.optional.qual

├─ org.checkerframework.checker.optional.qual.MaybePresent.class - [JAR]

├─ org.checkerframework.checker.optional.qual.OptionalBottom.class - [JAR]

├─ org.checkerframework.checker.optional.qual.PolyPresent.class - [JAR]

├─ org.checkerframework.checker.optional.qual.Present.class - [JAR]

htsjdk.samtools.cram.encoding.core.huffmanUtils

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanBitCode.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanCanoncialCodeGenerator.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanLeaf.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanNode.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanParams.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanParamsCalculator.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.huffmanUtils.HuffmanTree.class - [JAR]

org.biojava.bio.program.ssaha

├─ org.biojava.bio.program.ssaha.CompactedDataStore.class - [JAR]

├─ org.biojava.bio.program.ssaha.CompactedDataStoreFactory.class - [JAR]

├─ org.biojava.bio.program.ssaha.DataStore.class - [JAR]

├─ org.biojava.bio.program.ssaha.DataStoreFactory.class - [JAR]

├─ org.biojava.bio.program.ssaha.HitMerger.class - [JAR]

├─ org.biojava.bio.program.ssaha.MappedDataStore.class - [JAR]

├─ org.biojava.bio.program.ssaha.MappedDataStoreFactory.class - [JAR]

├─ org.biojava.bio.program.ssaha.NIODataStore.class - [JAR]

├─ org.biojava.bio.program.ssaha.NIODataStoreFactory.class - [JAR]

├─ org.biojava.bio.program.ssaha.SearchException.class - [JAR]

├─ org.biojava.bio.program.ssaha.SearchListener.class - [JAR]

├─ org.biojava.bio.program.ssaha.SequenceStreamer.class - [JAR]

org.biojavax.ontology

├─ org.biojavax.ontology.ComparableOntology.class - [JAR]

├─ org.biojavax.ontology.ComparableTerm.class - [JAR]

├─ org.biojavax.ontology.ComparableTriple.class - [JAR]

├─ org.biojavax.ontology.SimpleComparableOntology.class - [JAR]

├─ org.biojavax.ontology.SimpleComparableTerm.class - [JAR]

├─ org.biojavax.ontology.SimpleComparableTriple.class - [JAR]

org.apache.commons.compress.harmony.pack200

├─ org.apache.commons.compress.harmony.pack200.Archive.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.AttributeDefinitionBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.BHSDCodec.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.BandSet.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.BcBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPClass.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPConstant.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPDouble.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPFloat.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPInt.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPLong.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPMethodOrField.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPNameAndType.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPSignature.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPString.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CPUTF8.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CanonicalCodecFamilies.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.ClassBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.Codec.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CodecEncoding.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.ConstantPoolEntry.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.CpBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.FileBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.IcBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.IntList.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.MetadataBandGroup.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.NewAttribute.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.NewAttributeBands.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.Pack200Adapter.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.Pack200ClassReader.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.Pack200Exception.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.Pack200PackerAdapter.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.PackingOptions.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.PackingUtils.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.PopulationCodec.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.RunCodec.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.Segment.class - [JAR]

├─ org.apache.commons.compress.harmony.pack200.SegmentHeader.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractCatchingFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractExecutionThreadService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractIdleService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractListeningExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractScheduledService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AbstractTransformFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AggregateFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AggregateFutureState.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AsyncCallable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AsyncFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AtomicDouble.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AtomicDoubleArray.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.AtomicLongMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Atomics.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Callables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ClosingFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.CollectionFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.CombinedFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.CycleDetectingLockFactory.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.DirectExecutor.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ExecutionError.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ExecutionList.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ExecutionSequencer.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.FakeTimeLimiter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.FluentFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingBlockingDeque.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingBlockingQueue.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingCondition.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingFluentFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingListenableFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingListeningExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ForwardingLock.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.FutureCallback.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Futures.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.FuturesGetChecked.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.GwtFluentFutureCatchingSpecialization.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.GwtFuturesCatchingSpecialization.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ImmediateFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Internal.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.InterruptibleTask.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.JdkFutureAdapters.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ListenableFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ListenableFutureTask.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ListenableScheduledFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ListenerCallQueue.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ListeningExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ListeningScheduledExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Monitor.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.MoreExecutors.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.NullnessCasts.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.OverflowAvoidingLockSupport.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Partially.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Platform.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.RateLimiter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Runnables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.SequentialExecutor.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Service.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ServiceManager.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ServiceManagerBridge.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.SettableFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.SimpleTimeLimiter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.SmoothRateLimiter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Striped.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.ThreadFactoryBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.TimeLimiter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.TimeoutFuture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.TrustedListenableFutureTask.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.UncaughtExceptionHandlers.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.UncheckedExecutionException.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.UncheckedTimeoutException.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.Uninterruptibles.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.WrappingExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.WrappingScheduledExecutorService.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.package-info.class - [JAR]

org.checkerframework.checker.i18nformatter.qual

├─ org.checkerframework.checker.i18nformatter.qual.I18nChecksFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nConversionCategory.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nFormatBottom.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nFormatFor.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nInvalidFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nMakeFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nUnknownFormat.class - [JAR]

├─ org.checkerframework.checker.i18nformatter.qual.I18nValidFormat.class - [JAR]

org.biojava.bio.program.phred

├─ org.biojava.bio.program.phred.PhredFormat.class - [JAR]

├─ org.biojava.bio.program.phred.PhredSequence.class - [JAR]

├─ org.biojava.bio.program.phred.PhredTools.class - [JAR]

├─ org.biojava.bio.program.phred.Qualitative.class - [JAR]

htsjdk.samtools.cram.encoding.external

├─ htsjdk.samtools.cram.encoding.external.ByteArrayStopCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ByteArrayStopEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalByteArrayCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalByteArrayEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalByteCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalByteEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalIntegerEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalLongCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.external.ExternalLongEncoding.class - [JAR]

gov.nih.nlm.ncbi.ngs.error

├─ gov.nih.nlm.ncbi.ngs.error.LibraryIncompatibleVersionError.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.LibraryLoadError.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.error.LibraryNotFoundError.class - [JAR]

htsjdk.samtools.example

├─ htsjdk.samtools.example.ExampleSamUsage.class - [JAR]

├─ htsjdk.samtools.example.PrintReadsExample.class - [JAR]

org.biojava.bio.program.formats

├─ org.biojava.bio.program.formats.Embl.class - [JAR]

├─ org.biojava.bio.program.formats.Enzyme.class - [JAR]

├─ org.biojava.bio.program.formats.Format.class - [JAR]

├─ org.biojava.bio.program.formats.FormatTools.class - [JAR]

├─ org.biojava.bio.program.formats.Ligand.class - [JAR]

├─ org.biojava.bio.program.formats.Swissprot.class - [JAR]

org.biojavax.ga.exception

├─ org.biojavax.ga.exception.IllegalOrganismException.class - [JAR]

org.checkerframework.checker.nullness.qual

├─ org.checkerframework.checker.nullness.qual.AssertNonNullIfNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresKeyFor.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresKeyForIf.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.EnsuresNonNullIf.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.KeyFor.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.KeyForBottom.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.MonotonicNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.NonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.Nullable.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.PolyKeyFor.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.PolyNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.RequiresNonNull.class - [JAR]

├─ org.checkerframework.checker.nullness.qual.UnknownKeyFor.class - [JAR]

org.tukaani.xz.check

├─ org.tukaani.xz.check.CRC32.class - [JAR]

├─ org.tukaani.xz.check.CRC64.class - [JAR]

├─ org.tukaani.xz.check.Check.class - [JAR]

├─ org.tukaani.xz.check.None.class - [JAR]

├─ org.tukaani.xz.check.SHA256.class - [JAR]

htsjdk.samtools.util.ftp

├─ htsjdk.samtools.util.ftp.FTPClient.class - [JAR]

├─ htsjdk.samtools.util.ftp.FTPReply.class - [JAR]

├─ htsjdk.samtools.util.ftp.FTPStream.class - [JAR]

├─ htsjdk.samtools.util.ftp.FTPUtils.class - [JAR]

org.biojava.utils.process

├─ org.biojava.utils.process.ExternalProcess.class - [JAR]

├─ org.biojava.utils.process.InputHandler.class - [JAR]

├─ org.biojava.utils.process.OutputHandler.class - [JAR]

├─ org.biojava.utils.process.ReaderInputHandler.class - [JAR]

├─ org.biojava.utils.process.ReaderWriterPipe.class - [JAR]

├─ org.biojava.utils.process.SimpleInputHandler.class - [JAR]

├─ org.biojava.utils.process.SimpleOutputHandler.class - [JAR]

├─ org.biojava.utils.process.StreamPipe.class - [JAR]

├─ org.biojava.utils.process.WriterOutputHandler.class - [JAR]

com.github.luben.zstd

├─ com.github.luben.zstd.AutoCloseBase.class - [JAR]

├─ com.github.luben.zstd.BufferPool.class - [JAR]

├─ com.github.luben.zstd.NoPool.class - [JAR]

├─ com.github.luben.zstd.RecyclingBufferPool.class - [JAR]

├─ com.github.luben.zstd.SharedDictBase.class - [JAR]

├─ com.github.luben.zstd.Zstd.class - [JAR]

├─ com.github.luben.zstd.ZstdCompressCtx.class - [JAR]

├─ com.github.luben.zstd.ZstdDecompressCtx.class - [JAR]

├─ com.github.luben.zstd.ZstdDictCompress.class - [JAR]

├─ com.github.luben.zstd.ZstdDictDecompress.class - [JAR]

├─ com.github.luben.zstd.ZstdDictTrainer.class - [JAR]

├─ com.github.luben.zstd.ZstdDirectBufferCompressingStream.class - [JAR]

├─ com.github.luben.zstd.ZstdDirectBufferDecompressingStream.class - [JAR]

├─ com.github.luben.zstd.ZstdException.class - [JAR]

├─ com.github.luben.zstd.ZstdInputStream.class - [JAR]

├─ com.github.luben.zstd.ZstdInputStreamNoFinalizer.class - [JAR]

├─ com.github.luben.zstd.ZstdOutputStream.class - [JAR]

├─ com.github.luben.zstd.ZstdOutputStreamNoFinalizer.class - [JAR]

org.biojava.bio.chromatogram.graphic

├─ org.biojava.bio.chromatogram.graphic.ChromatogramGraphic.class - [JAR]

├─ org.biojava.bio.chromatogram.graphic.ChromatogramNonlinearScaler.class - [JAR]

├─ org.biojava.bio.chromatogram.graphic.FixedBaseWidthScaler.class - [JAR]

htsjdk.tribble.example

├─ htsjdk.tribble.example.CountRecords.class - [JAR]

├─ htsjdk.tribble.example.ExampleBinaryCodec.class - [JAR]

├─ htsjdk.tribble.example.IndexToTable.class - [JAR]

├─ htsjdk.tribble.example.IndicesAreEqual.class - [JAR]

├─ htsjdk.tribble.example.ProfileIndexReading.class - [JAR]

org.apache.commons.compress.utils

├─ org.apache.commons.compress.utils.ArchiveUtils.class - [JAR]

├─ org.apache.commons.compress.utils.BitInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.BoundedArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.BoundedInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.BoundedSeekableByteChannelInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.ByteUtils.class - [JAR]

├─ org.apache.commons.compress.utils.CRC32VerifyingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CharsetNames.class - [JAR]

├─ org.apache.commons.compress.utils.Charsets.class - [JAR]

├─ org.apache.commons.compress.utils.ChecksumCalculatingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.ChecksumVerifyingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CloseShieldFilterInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CountingInputStream.class - [JAR]

├─ org.apache.commons.compress.utils.CountingOutputStream.class - [JAR]

├─ org.apache.commons.compress.utils.FileNameUtils.class - [JAR]

├─ org.apache.commons.compress.utils.FixedLengthBlockOutputStream.class - [JAR]

├─ org.apache.commons.compress.utils.FlushShieldFilterOutputStream.class - [JAR]

├─ org.apache.commons.compress.utils.IOUtils.class - [JAR]

├─ org.apache.commons.compress.utils.InputStreamStatistics.class - [JAR]

├─ org.apache.commons.compress.utils.Iterators.class - [JAR]

├─ org.apache.commons.compress.utils.Lists.class - [JAR]

├─ org.apache.commons.compress.utils.MultiReadOnlySeekableByteChannel.class - [JAR]

├─ org.apache.commons.compress.utils.OsgiUtils.class - [JAR]

├─ org.apache.commons.compress.utils.SeekableInMemoryByteChannel.class - [JAR]

├─ org.apache.commons.compress.utils.ServiceLoaderIterator.class - [JAR]

├─ org.apache.commons.compress.utils.Sets.class - [JAR]

├─ org.apache.commons.compress.utils.SkipShieldingInputStream.class - [JAR]

htsjdk.io

├─ htsjdk.io.AsyncWriterPool.class - [JAR]

├─ htsjdk.io.HtsPath.class - [JAR]

├─ htsjdk.io.IOPath.class - [JAR]

├─ htsjdk.io.Writer.class - [JAR]

org.biojava.bio.seq.db.emblcd

├─ org.biojava.bio.seq.db.emblcd.AcnumHitReader.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.AcnumTrgReader.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.DivisionLkpReader.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.EmblCDROMIndexReader.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.EmblCDROMRandomAccess.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.EntryNamIdxReader.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.EntryNamRandomAccess.class - [JAR]

├─ org.biojava.bio.seq.db.emblcd.RecordParser.class - [JAR]

gov.nih.nlm.ncbi.ngs

├─ gov.nih.nlm.ncbi.ngs.DownloadManager.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.FileCreator.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.HttpException.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.HttpManager.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.LMProperties.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.LibDependencies.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.LibManager.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.LibPathIterator.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.LibVersionChecker.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.Logger.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.Manager.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.NGS.class - [JAR]

├─ gov.nih.nlm.ncbi.ngs.Version.class - [JAR]

org.biojava.utils.lsid

├─ org.biojava.utils.lsid.Identifiable.class - [JAR]

├─ org.biojava.utils.lsid.LifeScienceIdentifier.class - [JAR]

├─ org.biojava.utils.lsid.LifeScienceIdentifierParseException.class - [JAR]

org.apache.commons.compress.compressors.pack200

├─ org.apache.commons.compress.compressors.pack200.InMemoryCachingStreamBridge.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200Strategy.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.Pack200Utils.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.StreamBridge.class - [JAR]

├─ org.apache.commons.compress.compressors.pack200.TempFileCachingStreamBridge.class - [JAR]

org.biojava.bio.program

├─ org.biojava.bio.program.Meme.class - [JAR]

htsjdk.tribble.index

├─ htsjdk.tribble.index.AbstractIndex.class - [JAR]

├─ htsjdk.tribble.index.Block.class - [JAR]

├─ htsjdk.tribble.index.ChrIndex.class - [JAR]

├─ htsjdk.tribble.index.DynamicIndexCreator.class - [JAR]

├─ htsjdk.tribble.index.Index.class - [JAR]

├─ htsjdk.tribble.index.IndexCreator.class - [JAR]

├─ htsjdk.tribble.index.IndexFactory.class - [JAR]

├─ htsjdk.tribble.index.MutableIndex.class - [JAR]

├─ htsjdk.tribble.index.TribbleIndexCreator.class - [JAR]

htsjdk.tribble.index.linear

├─ htsjdk.tribble.index.linear.LinearIndex.class - [JAR]

├─ htsjdk.tribble.index.linear.LinearIndexCreator.class - [JAR]

org.apache.commons.compress.archivers.tar

├─ org.apache.commons.compress.archivers.tar.TarArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveSparseEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveSparseZeroInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarArchiveStructSparse.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarFile.class - [JAR]

├─ org.apache.commons.compress.archivers.tar.TarUtils.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.AllowConcurrentEvents.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.AsyncEventBus.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.DeadEvent.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.Dispatcher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.EventBus.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.Subscribe.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.Subscriber.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.SubscriberExceptionContext.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.SubscriberExceptionHandler.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.SubscriberRegistry.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.eventbus.package-info.class - [JAR]

org.checkerframework.checker.propkey.qual

├─ org.checkerframework.checker.propkey.qual.PropertyKey.class - [JAR]

├─ org.checkerframework.checker.propkey.qual.PropertyKeyBottom.class - [JAR]

├─ org.checkerframework.checker.propkey.qual.UnknownPropertyKey.class - [JAR]

org.apache.commons.codec.language

├─ org.apache.commons.codec.language.AbstractCaverphone.class - [JAR]

├─ org.apache.commons.codec.language.Caverphone.class - [JAR]

├─ org.apache.commons.codec.language.Caverphone1.class - [JAR]

├─ org.apache.commons.codec.language.Caverphone2.class - [JAR]

├─ org.apache.commons.codec.language.ColognePhonetic.class - [JAR]

├─ org.apache.commons.codec.language.DaitchMokotoffSoundex.class - [JAR]

├─ org.apache.commons.codec.language.DoubleMetaphone.class - [JAR]

├─ org.apache.commons.codec.language.MatchRatingApproachEncoder.class - [JAR]

├─ org.apache.commons.codec.language.Metaphone.class - [JAR]

├─ org.apache.commons.codec.language.Nysiis.class - [JAR]

├─ org.apache.commons.codec.language.RefinedSoundex.class - [JAR]

├─ org.apache.commons.codec.language.Soundex.class - [JAR]

├─ org.apache.commons.codec.language.SoundexUtils.class - [JAR]

org.biojava.bio.seq.homol

├─ org.biojava.bio.seq.homol.Homology.class - [JAR]

├─ org.biojava.bio.seq.homol.HomologyDB.class - [JAR]

├─ org.biojava.bio.seq.homol.HomologyFeature.class - [JAR]

├─ org.biojava.bio.seq.homol.SimilarityPairFeature.class - [JAR]

├─ org.biojava.bio.seq.homol.SimpleHomology.class - [JAR]

org.apache.commons.compress.compressors.bzip2

├─ org.apache.commons.compress.compressors.bzip2.BZip2CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BZip2CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BZip2Constants.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BZip2Utils.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.BlockSort.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.CRC.class - [JAR]

├─ org.apache.commons.compress.compressors.bzip2.Rand.class - [JAR]

org.biojava.bio.seq.io.game12

├─ org.biojava.bio.seq.io.game12.GAMEAnnotationHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEAspectHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEDbxrefHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEFeatureSetHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEFeatureSpanHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEGeneHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMEPropertyHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMESeqHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMESeqRelHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.GAMESpanHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.StAXFeatureHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game12.StAXHandlerFactory.class - [JAR]

org.apache.commons.compress.archivers

├─ org.apache.commons.compress.archivers.ArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveException.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveStreamFactory.class - [JAR]

├─ org.apache.commons.compress.archivers.ArchiveStreamProvider.class - [JAR]

├─ org.apache.commons.compress.archivers.EntryStreamOffsets.class - [JAR]

├─ org.apache.commons.compress.archivers.Lister.class - [JAR]

├─ org.apache.commons.compress.archivers.StreamingNotSupportedException.class - [JAR]

htsjdk.tribble.util.popgen

├─ htsjdk.tribble.util.popgen.HardyWeinbergCalculation.class - [JAR]

htsjdk.tribble.exception

├─ htsjdk.tribble.exception.CodecLineParsingException.class - [JAR]

├─ htsjdk.tribble.exception.UnsortedFileException.class - [JAR]

org.biojava.ontology.io

├─ org.biojava.ontology.io.GOParser.class - [JAR]

├─ org.biojava.ontology.io.OboParser.class - [JAR]

├─ org.biojava.ontology.io.TabDelimParser.class - [JAR]

org.checkerframework.checker.initialization.qual

├─ org.checkerframework.checker.initialization.qual.FBCBottom.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.Initialized.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.NotOnlyInitialized.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.UnderInitialization.class - [JAR]

├─ org.checkerframework.checker.initialization.qual.UnknownInitialization.class - [JAR]

org.biojava.bio.program.ssbind

├─ org.biojava.bio.program.ssbind.AnnotationFactory.class - [JAR]

org.biojava.bibliography

├─ org.biojava.bibliography.BibRef.class - [JAR]

├─ org.biojava.bibliography.BibRefException.class - [JAR]

├─ org.biojava.bibliography.BibRefQuery.class - [JAR]

├─ org.biojava.bibliography.BibRefSupport.class - [JAR]

├─ org.biojava.bibliography.BiblioArticle.class - [JAR]

├─ org.biojava.bibliography.BiblioBook.class - [JAR]

├─ org.biojava.bibliography.BiblioBookArticle.class - [JAR]

├─ org.biojava.bibliography.BiblioCriterion.class - [JAR]

├─ org.biojava.bibliography.BiblioDescription.class - [JAR]

├─ org.biojava.bibliography.BiblioEntryStatus.class - [JAR]

├─ org.biojava.bibliography.BiblioJournal.class - [JAR]

├─ org.biojava.bibliography.BiblioJournalArticle.class - [JAR]

├─ org.biojava.bibliography.BiblioOrganisation.class - [JAR]

├─ org.biojava.bibliography.BiblioPatent.class - [JAR]

├─ org.biojava.bibliography.BiblioPerson.class - [JAR]

├─ org.biojava.bibliography.BiblioProceeding.class - [JAR]

├─ org.biojava.bibliography.BiblioProvider.class - [JAR]

├─ org.biojava.bibliography.BiblioScope.class - [JAR]

├─ org.biojava.bibliography.BiblioService.class - [JAR]

├─ org.biojava.bibliography.BiblioSubject.class - [JAR]

├─ org.biojava.bibliography.BiblioTechReport.class - [JAR]

├─ org.biojava.bibliography.BiblioThesis.class - [JAR]

├─ org.biojava.bibliography.BiblioWebResource.class - [JAR]

org.biojava.bio.seq.db

├─ org.biojava.bio.seq.db.AbstractSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.AnnotatedSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.BioIndex.class - [JAR]

├─ org.biojava.bio.seq.db.CachingSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.DummySequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.DummySequenceDBInstallation.class - [JAR]

├─ org.biojava.bio.seq.db.EmblCDROMIndexStore.class - [JAR]

├─ org.biojava.bio.seq.db.FetchURL.class - [JAR]

├─ org.biojava.bio.seq.db.GenbankSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.GenpeptSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.HashSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.IDMaker.class - [JAR]

├─ org.biojava.bio.seq.db.IllegalIDException.class - [JAR]

├─ org.biojava.bio.seq.db.Index.class - [JAR]

├─ org.biojava.bio.seq.db.IndexStore.class - [JAR]

├─ org.biojava.bio.seq.db.IndexedSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.NCBISequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.SequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.SequenceDBInstallation.class - [JAR]

├─ org.biojava.bio.seq.db.SequenceDBLite.class - [JAR]

├─ org.biojava.bio.seq.db.SequenceDBWrapper.class - [JAR]

├─ org.biojava.bio.seq.db.SimpleIndex.class - [JAR]

├─ org.biojava.bio.seq.db.SimpleSequenceDBInstallation.class - [JAR]

├─ org.biojava.bio.seq.db.SubSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.SwissprotSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.TabIndexStore.class - [JAR]

├─ org.biojava.bio.seq.db.ViewingSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.db.WebSequenceDB.class - [JAR]

org.dishevelled.graph.impl

├─ org.dishevelled.graph.impl.AbstractCollectionDecorator.class - [JAR]

├─ org.dishevelled.graph.impl.AbstractGraphDecorator.class - [JAR]

├─ org.dishevelled.graph.impl.AbstractIteratorDecorator.class - [JAR]

├─ org.dishevelled.graph.impl.AbstractMapDecorator.class - [JAR]

├─ org.dishevelled.graph.impl.AbstractMapEntryDecorator.class - [JAR]

├─ org.dishevelled.graph.impl.AbstractSetDecorator.class - [JAR]

├─ org.dishevelled.graph.impl.GraphImpl.class - [JAR]

├─ org.dishevelled.graph.impl.GraphUtils.class - [JAR]

org.tukaani.xz.rangecoder

├─ org.tukaani.xz.rangecoder.RangeCoder.class - [JAR]

├─ org.tukaani.xz.rangecoder.RangeDecoder.class - [JAR]

├─ org.tukaani.xz.rangecoder.RangeDecoderFromBuffer.class - [JAR]

├─ org.tukaani.xz.rangecoder.RangeDecoderFromStream.class - [JAR]

├─ org.tukaani.xz.rangecoder.RangeEncoder.class - [JAR]

├─ org.tukaani.xz.rangecoder.RangeEncoderToBuffer.class - [JAR]

├─ org.tukaani.xz.rangecoder.RangeEncoderToStream.class - [JAR]

org.apache.commons.codec.binary

├─ org.apache.commons.codec.binary.Base16.class - [JAR]

├─ org.apache.commons.codec.binary.Base16InputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base16OutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base32.class - [JAR]

├─ org.apache.commons.codec.binary.Base32InputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base32OutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base64.class - [JAR]

├─ org.apache.commons.codec.binary.Base64InputStream.class - [JAR]

├─ org.apache.commons.codec.binary.Base64OutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.BaseNCodec.class - [JAR]

├─ org.apache.commons.codec.binary.BaseNCodecInputStream.class - [JAR]

├─ org.apache.commons.codec.binary.BaseNCodecOutputStream.class - [JAR]

├─ org.apache.commons.codec.binary.BinaryCodec.class - [JAR]

├─ org.apache.commons.codec.binary.CharSequenceUtils.class - [JAR]

├─ org.apache.commons.codec.binary.Hex.class - [JAR]

├─ org.apache.commons.codec.binary.StringUtils.class - [JAR]

org.biojava.bio.seq.filter

├─ org.biojava.bio.seq.filter.FilterTransformer.class - [JAR]

org.dishevelled.bio.alignment.paf

├─ org.dishevelled.bio.alignment.paf.PafListener.class - [JAR]

├─ org.dishevelled.bio.alignment.paf.PafReader.class - [JAR]

├─ org.dishevelled.bio.alignment.paf.PafRecord.class - [JAR]

├─ org.dishevelled.bio.alignment.paf.PafWriter.class - [JAR]

org.biojava.utils.xml

├─ org.biojava.utils.xml.AppBeanRunner.class - [JAR]

├─ org.biojava.utils.xml.AppEntry.class - [JAR]

├─ org.biojava.utils.xml.AppException.class - [JAR]

├─ org.biojava.utils.xml.FastXMLWriter.class - [JAR]

├─ org.biojava.utils.xml.Initializable.class - [JAR]

├─ org.biojava.utils.xml.PrettyXMLWriter.class - [JAR]

├─ org.biojava.utils.xml.ResourceEntityResolver.class - [JAR]

├─ org.biojava.utils.xml.XMLBeans.class - [JAR]

├─ org.biojava.utils.xml.XMLWritable.class - [JAR]

├─ org.biojava.utils.xml.XMLWriter.class - [JAR]

htsjdk.samtools.filter

├─ htsjdk.samtools.filter.AbstractJavascriptFilter.class - [JAR]

├─ htsjdk.samtools.filter.AggregateFilter.class - [JAR]

├─ htsjdk.samtools.filter.AlignedFilter.class - [JAR]

├─ htsjdk.samtools.filter.DuplicateReadFilter.class - [JAR]

├─ htsjdk.samtools.filter.FailsVendorReadQualityFilter.class - [JAR]

├─ htsjdk.samtools.filter.FilteringIterator.class - [JAR]

├─ htsjdk.samtools.filter.FilteringSamIterator.class - [JAR]

├─ htsjdk.samtools.filter.InsertSizeFilter.class - [JAR]

├─ htsjdk.samtools.filter.IntervalFilter.class - [JAR]

├─ htsjdk.samtools.filter.IntervalKeepPairFilter.class - [JAR]

├─ htsjdk.samtools.filter.InvertFilter.class - [JAR]

├─ htsjdk.samtools.filter.JavascriptSamRecordFilter.class - [JAR]

├─ htsjdk.samtools.filter.MappingQualityFilter.class - [JAR]

├─ htsjdk.samtools.filter.NotPrimaryAlignmentFilter.class - [JAR]

├─ htsjdk.samtools.filter.OverclippedReadFilter.class - [JAR]

├─ htsjdk.samtools.filter.ReadNameFilter.class - [JAR]

├─ htsjdk.samtools.filter.SamRecordFilter.class - [JAR]

├─ htsjdk.samtools.filter.SecondaryAlignmentFilter.class - [JAR]

├─ htsjdk.samtools.filter.SecondaryOrSupplementaryFilter.class - [JAR]

├─ htsjdk.samtools.filter.SolexaNoiseFilter.class - [JAR]

├─ htsjdk.samtools.filter.TagFilter.class - [JAR]

├─ htsjdk.samtools.filter.WholeReadClippedFilter.class - [JAR]

org.biojava.bio.proteomics.aaindex

├─ org.biojava.bio.proteomics.aaindex.AAindex.class - [JAR]

├─ org.biojava.bio.proteomics.aaindex.AAindexStreamReader.class - [JAR]

├─ org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.class - [JAR]

├─ org.biojava.bio.proteomics.aaindex.SymbolPropertyTableDB.class - [JAR]

├─ org.biojava.bio.proteomics.aaindex.SymbolPropertyTableIterator.class - [JAR]

htsjdk.samtools.cram.encoding.writer

├─ htsjdk.samtools.cram.encoding.writer.CramRecordWriter.class - [JAR]

├─ htsjdk.samtools.cram.encoding.writer.DataSeriesWriter.class - [JAR]

org.biojava.utils.math

├─ org.biojava.utils.math.BinarySearch.class - [JAR]

├─ org.biojava.utils.math.ComputeObject.class - [JAR]

htsjdk.samtools.seekablestream

├─ htsjdk.samtools.seekablestream.ByteArraySeekableStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.ISeekableStreamFactory.class - [JAR]

├─ htsjdk.samtools.seekablestream.ReadableSeekableStreamByteChannel.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableBufferedStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableFTPStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableFTPStreamHelper.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableFileStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableHTTPStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableMemoryStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekablePathStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableStream.class - [JAR]

├─ htsjdk.samtools.seekablestream.SeekableStreamFactory.class - [JAR]

├─ htsjdk.samtools.seekablestream.UserPasswordInput.class - [JAR]

mjson

├─ mjson.Json.class - [JAR]

org.apache.commons.compress.archivers.dump

├─ org.apache.commons.compress.archivers.dump.Dirent.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveSummary.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.DumpArchiveUtil.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.InvalidFormatException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.ShortFileException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.TapeInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.UnrecognizedFormatException.class - [JAR]

├─ org.apache.commons.compress.archivers.dump.UnsupportedCompressionAlgorithmException.class - [JAR]

org.dishevelled.bio.alignment.gaf

├─ org.dishevelled.bio.alignment.gaf.GafListener.class - [JAR]

├─ org.dishevelled.bio.alignment.gaf.GafReader.class - [JAR]

├─ org.dishevelled.bio.alignment.gaf.GafRecord.class - [JAR]

├─ org.dishevelled.bio.alignment.gaf.GafWriter.class - [JAR]

org.biojava.bio.seq.distributed

├─ org.biojava.bio.seq.distributed.DistComponentFeature.class - [JAR]

├─ org.biojava.bio.seq.distributed.DistDataSource.class - [JAR]

├─ org.biojava.bio.seq.distributed.DistProjectionContext.class - [JAR]

├─ org.biojava.bio.seq.distributed.DistributedSequence.class - [JAR]

├─ org.biojava.bio.seq.distributed.DistributedSequenceDB.class - [JAR]

├─ org.biojava.bio.seq.distributed.GFFDataSource.class - [JAR]

├─ org.biojava.bio.seq.distributed.SequenceDBDataSource.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.annotations

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.annotations.Beta.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.annotations.GwtCompatible.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.annotations.GwtIncompatible.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.annotations.VisibleForTesting.class - [JAR]

org.dishevelled.bio.variant.vcf.header

├─ org.dishevelled.bio.variant.vcf.header.VcfAltHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfContigHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfFilterHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfFormatHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfHeaderLineNumber.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfHeaderLineParser.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfHeaderLineType.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfHeaderLines.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfInfoHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfMetaHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfPedigreeHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfSampleHeaderLine.class - [JAR]

├─ org.dishevelled.bio.variant.vcf.header.VcfStructuredHeaderLine.class - [JAR]

htsjdk.samtools.cram.ref

├─ htsjdk.samtools.cram.ref.CRAMLazyReferenceSource.class - [JAR]

├─ htsjdk.samtools.cram.ref.CRAMReferenceSource.class - [JAR]

├─ htsjdk.samtools.cram.ref.EnaRefService.class - [JAR]

├─ htsjdk.samtools.cram.ref.GaveUpException.class - [JAR]

├─ htsjdk.samtools.cram.ref.ReferenceContext.class - [JAR]

├─ htsjdk.samtools.cram.ref.ReferenceContextType.class - [JAR]

├─ htsjdk.samtools.cram.ref.ReferenceSource.class - [JAR]

org.checkerframework.checker.index.qual

├─ org.checkerframework.checker.index.qual.EnsuresLTLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.EnsuresLTLengthOfIf.class - [JAR]

├─ org.checkerframework.checker.index.qual.GTENegativeOne.class - [JAR]

├─ org.checkerframework.checker.index.qual.HasSubsequence.class - [JAR]

├─ org.checkerframework.checker.index.qual.IndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.IndexOrHigh.class - [JAR]

├─ org.checkerframework.checker.index.qual.IndexOrLow.class - [JAR]

├─ org.checkerframework.checker.index.qual.LTEqLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LTLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LTOMLengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LengthOf.class - [JAR]

├─ org.checkerframework.checker.index.qual.LessThan.class - [JAR]

├─ org.checkerframework.checker.index.qual.LessThanBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.LessThanUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.LowerBoundBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.LowerBoundUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.NegativeIndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.NonNegative.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyIndex.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyLength.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyLowerBound.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolySameLen.class - [JAR]

├─ org.checkerframework.checker.index.qual.PolyUpperBound.class - [JAR]

├─ org.checkerframework.checker.index.qual.Positive.class - [JAR]

├─ org.checkerframework.checker.index.qual.SameLen.class - [JAR]

├─ org.checkerframework.checker.index.qual.SameLenBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.SameLenUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.SearchIndexBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.SearchIndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.SearchIndexUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.SubstringIndexBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.SubstringIndexFor.class - [JAR]

├─ org.checkerframework.checker.index.qual.SubstringIndexUnknown.class - [JAR]

├─ org.checkerframework.checker.index.qual.UpperBoundBottom.class - [JAR]

├─ org.checkerframework.checker.index.qual.UpperBoundUnknown.class - [JAR]

htsjdk.tribble.index.tabix

├─ htsjdk.tribble.index.tabix.AllRefsTabixIndexCreator.class - [JAR]

├─ htsjdk.tribble.index.tabix.StreamBasedTabixIndexCreator.class - [JAR]

├─ htsjdk.tribble.index.tabix.TabixFormat.class - [JAR]

├─ htsjdk.tribble.index.tabix.TabixIndex.class - [JAR]

├─ htsjdk.tribble.index.tabix.TabixIndexCreator.class - [JAR]

├─ htsjdk.tribble.index.tabix.TabixIndexMerger.class - [JAR]

org.apache.commons.compress.compressors.snappy

├─ org.apache.commons.compress.compressors.snappy.FramedSnappyCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.FramedSnappyCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.FramedSnappyDialect.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.PureJavaCrc32C.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.SnappyCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.snappy.SnappyCompressorOutputStream.class - [JAR]

htsjdk.samtools

├─ htsjdk.samtools.AbstractBAMFileIndex.class - [JAR]

├─ htsjdk.samtools.AbstractSAMHeaderRecord.class - [JAR]

├─ htsjdk.samtools.AlignmentBlock.class - [JAR]

├─ htsjdk.samtools.AsyncSAMFileWriter.class - [JAR]

├─ htsjdk.samtools.BAMFileConstants.class - [JAR]

├─ htsjdk.samtools.BAMFileReader.class - [JAR]

├─ htsjdk.samtools.BAMFileSpan.class - [JAR]

├─ htsjdk.samtools.BAMFileWriter.class - [JAR]

├─ htsjdk.samtools.BAMIndex.class - [JAR]

├─ htsjdk.samtools.BAMIndexContent.class - [JAR]

├─ htsjdk.samtools.BAMIndexMerger.class - [JAR]

├─ htsjdk.samtools.BAMIndexMetaData.class - [JAR]

├─ htsjdk.samtools.BAMIndexWriter.class - [JAR]

├─ htsjdk.samtools.BAMIndexer.class - [JAR]

├─ htsjdk.samtools.BAMIteratorFilter.class - [JAR]

├─ htsjdk.samtools.BAMQueryMultipleIntervalsIteratorFilter.class - [JAR]

├─ htsjdk.samtools.BAMRecord.class - [JAR]

├─ htsjdk.samtools.BAMRecordCodec.class - [JAR]

├─ htsjdk.samtools.BAMSBIIndexer.class - [JAR]

├─ htsjdk.samtools.BAMStartingAtIteratorFilter.class - [JAR]

├─ htsjdk.samtools.BAMStreamWriter.class - [JAR]

├─ htsjdk.samtools.BamFileIoUtils.class - [JAR]

├─ htsjdk.samtools.BamIndexValidator.class - [JAR]

├─ htsjdk.samtools.Bin.class - [JAR]

├─ htsjdk.samtools.BinList.class - [JAR]

├─ htsjdk.samtools.BinWithOffset.class - [JAR]

├─ htsjdk.samtools.BinaryBAMIndexWriter.class - [JAR]

├─ htsjdk.samtools.BinaryCigarCodec.class - [JAR]

├─ htsjdk.samtools.BinaryTagCodec.class - [JAR]

├─ htsjdk.samtools.BinningIndexBuilder.class - [JAR]

├─ htsjdk.samtools.BinningIndexContent.class - [JAR]

├─ htsjdk.samtools.BrowseableBAMIndex.class - [JAR]

├─ htsjdk.samtools.CRAMBAIIndexer.class - [JAR]

├─ htsjdk.samtools.CRAMCRAIIndexer.class - [JAR]

├─ htsjdk.samtools.CRAMContainerStreamWriter.class - [JAR]

├─ htsjdk.samtools.CRAMFileReader.class - [JAR]

├─ htsjdk.samtools.CRAMFileWriter.class - [JAR]

├─ htsjdk.samtools.CRAMIndexer.class - [JAR]

├─ htsjdk.samtools.CRAMIterator.class - [JAR]

├─ htsjdk.samtools.CSIIndex.class - [JAR]

├─ htsjdk.samtools.CachingBAMFileIndex.class - [JAR]

├─ htsjdk.samtools.CachingBamFileIndexOptimizedForMerging.class - [JAR]

├─ htsjdk.samtools.ChainedDownsamplingIterator.class - [JAR]

├─ htsjdk.samtools.Chunk.class - [JAR]

├─ htsjdk.samtools.Cigar.class - [JAR]

├─ htsjdk.samtools.CigarElement.class - [JAR]

├─ htsjdk.samtools.CigarOperator.class - [JAR]

├─ htsjdk.samtools.ComparableSamRecordIterator.class - [JAR]

├─ htsjdk.samtools.CompressedIndexFileBuffer.class - [JAR]

├─ htsjdk.samtools.ConstantMemoryDownsamplingIterator.class - [JAR]

├─ htsjdk.samtools.CoordinateSortedPairInfoMap.class - [JAR]

├─ htsjdk.samtools.CustomReaderFactory.class - [JAR]

├─ htsjdk.samtools.DefaultSAMRecordFactory.class - [JAR]

├─ htsjdk.samtools.Defaults.class - [JAR]

├─ htsjdk.samtools.DiskBasedBAMFileIndex.class - [JAR]

├─ htsjdk.samtools.DownsamplingIterator.class - [JAR]

├─ htsjdk.samtools.DownsamplingIteratorFactory.class - [JAR]

├─ htsjdk.samtools.DuplicateScoringStrategy.class - [JAR]

├─ htsjdk.samtools.DuplicateSet.class - [JAR]

├─ htsjdk.samtools.DuplicateSetIterator.class - [JAR]

├─ htsjdk.samtools.FileInputResource.class - [JAR]

├─ htsjdk.samtools.FileTruncatedException.class - [JAR]

├─ htsjdk.samtools.GenomicIndexUtil.class - [JAR]

├─ htsjdk.samtools.HighAccuracyDownsamplingIterator.class - [JAR]

├─ htsjdk.samtools.HtsgetBAMFileReader.class - [JAR]

├─ htsjdk.samtools.HtsgetInputResource.class - [JAR]

├─ htsjdk.samtools.IndexFileBuffer.class - [JAR]

├─ htsjdk.samtools.IndexFileBufferFactory.class - [JAR]

├─ htsjdk.samtools.IndexMerger.class - [JAR]

├─ htsjdk.samtools.IndexStreamBuffer.class - [JAR]

├─ htsjdk.samtools.Indexer.class - [JAR]

├─ htsjdk.samtools.InputResource.class - [JAR]

├─ htsjdk.samtools.InputStreamInputResource.class - [JAR]

├─ htsjdk.samtools.LinearIndex.class - [JAR]

├─ htsjdk.samtools.MemoryMappedFileBuffer.class - [JAR]

├─ htsjdk.samtools.MergingSamRecordIterator.class - [JAR]

├─ htsjdk.samtools.NotPrimarySkippingIterator.class - [JAR]

├─ htsjdk.samtools.PathInputResource.class - [JAR]

├─ htsjdk.samtools.QueryInterval.class - [JAR]

├─ htsjdk.samtools.RandomAccessFileBuffer.class - [JAR]

├─ htsjdk.samtools.ReservedTagConstants.class - [JAR]

├─ htsjdk.samtools.SAMBinaryTagAndUnsignedArrayValue.class - [JAR]

├─ htsjdk.samtools.SAMBinaryTagAndValue.class - [JAR]

├─ htsjdk.samtools.SAMException.class - [JAR]

├─ htsjdk.samtools.SAMFileHeader.class - [JAR]

├─ htsjdk.samtools.SAMFileSource.class - [JAR]

├─ htsjdk.samtools.SAMFileSpan.class - [JAR]

├─ htsjdk.samtools.SAMFileWriter.class - [JAR]

├─ htsjdk.samtools.SAMFileWriterFactory.class - [JAR]

├─ htsjdk.samtools.SAMFileWriterImpl.class - [JAR]

├─ htsjdk.samtools.SAMFlag.class - [JAR]

├─ htsjdk.samtools.SAMFormatException.class - [JAR]

├─ htsjdk.samtools.SAMHeaderRecordComparator.class - [JAR]

├─ htsjdk.samtools.SAMLineParser.class - [JAR]

├─ htsjdk.samtools.SAMProgramRecord.class - [JAR]

├─ htsjdk.samtools.SAMReadGroupRecord.class - [JAR]

├─ htsjdk.samtools.SAMRecord.class - [JAR]

├─ htsjdk.samtools.SAMRecordComparator.class - [JAR]

├─ htsjdk.samtools.SAMRecordCoordinateComparator.class - [JAR]

├─ htsjdk.samtools.SAMRecordDuplicateComparator.class - [JAR]

├─ htsjdk.samtools.SAMRecordFactory.class - [JAR]

├─ htsjdk.samtools.SAMRecordIterator.class - [JAR]

├─ htsjdk.samtools.SAMRecordQueryHashComparator.class - [JAR]

├─ htsjdk.samtools.SAMRecordQueryNameComparator.class - [JAR]

├─ htsjdk.samtools.SAMRecordSetBuilder.class - [JAR]

├─ htsjdk.samtools.SAMSequenceDictionary.class - [JAR]

├─ htsjdk.samtools.SAMSequenceDictionaryCodec.class - [JAR]

├─ htsjdk.samtools.SAMSequenceRecord.class - [JAR]

├─ htsjdk.samtools.SAMSortOrderChecker.class - [JAR]

├─ htsjdk.samtools.SAMTag.class - [JAR]

├─ htsjdk.samtools.SAMTagUtil.class - [JAR]

├─ htsjdk.samtools.SAMTestUtil.class - [JAR]

├─ htsjdk.samtools.SAMTextHeaderCodec.class - [JAR]

├─ htsjdk.samtools.SAMTextReader.class - [JAR]

├─ htsjdk.samtools.SAMTextWriter.class - [JAR]

├─ htsjdk.samtools.SAMUtils.class - [JAR]

├─ htsjdk.samtools.SAMValidationError.class - [JAR]

├─ htsjdk.samtools.SBIIndex.class - [JAR]

├─ htsjdk.samtools.SBIIndexMerger.class - [JAR]

├─ htsjdk.samtools.SBIIndexWriter.class - [JAR]

├─ htsjdk.samtools.SQTagUtil.class - [JAR]

├─ htsjdk.samtools.SRAFileReader.class - [JAR]

├─ htsjdk.samtools.SRAIndex.class - [JAR]

├─ htsjdk.samtools.SRAInputResource.class - [JAR]

├─ htsjdk.samtools.SRAIterator.class - [JAR]

├─ htsjdk.samtools.SamFileHeaderMerger.class - [JAR]

├─ htsjdk.samtools.SamFileValidator.class - [JAR]

├─ htsjdk.samtools.SamFiles.class - [JAR]

├─ htsjdk.samtools.SamFlagField.class - [JAR]

├─ htsjdk.samtools.SamIndexes.class - [JAR]

├─ htsjdk.samtools.SamInputResource.class - [JAR]

├─ htsjdk.samtools.SamPairUtil.class - [JAR]

├─ htsjdk.samtools.SamReader.class - [JAR]

├─ htsjdk.samtools.SamReaderFactory.class - [JAR]

├─ htsjdk.samtools.SamStreams.class - [JAR]

├─ htsjdk.samtools.SecondaryAlignmentSkippingIterator.class - [JAR]

├─ htsjdk.samtools.SecondaryOrSupplementarySkippingIterator.class - [JAR]

├─ htsjdk.samtools.SeekableStreamInputResource.class - [JAR]

├─ htsjdk.samtools.StreamInflatingIndexingOutputStream.class - [JAR]

├─ htsjdk.samtools.TagValueAndUnsignedArrayFlag.class - [JAR]

├─ htsjdk.samtools.TextCigarCodec.class - [JAR]

├─ htsjdk.samtools.TextTagCodec.class - [JAR]

├─ htsjdk.samtools.TextualBAMIndexWriter.class - [JAR]

├─ htsjdk.samtools.UrlInputResource.class - [JAR]

├─ htsjdk.samtools.ValidationStringency.class - [JAR]

org.biojavax.bio.seq

├─ org.biojavax.bio.seq.CompoundRichLocation.class - [JAR]

├─ org.biojavax.bio.seq.DummyRichSequenceHandler.class - [JAR]

├─ org.biojavax.bio.seq.EmptyRichLocation.class - [JAR]

├─ org.biojavax.bio.seq.InfinitelyAmbiguousSymbolList.class - [JAR]

├─ org.biojavax.bio.seq.MultiSourceCompoundRichLocation.class - [JAR]

├─ org.biojavax.bio.seq.Position.class - [JAR]

├─ org.biojavax.bio.seq.PositionResolver.class - [JAR]

├─ org.biojavax.bio.seq.RichFeature.class - [JAR]

├─ org.biojavax.bio.seq.RichFeatureRelationship.class - [JAR]

├─ org.biojavax.bio.seq.RichFeatureRelationshipHolder.class - [JAR]

├─ org.biojavax.bio.seq.RichLocation.class - [JAR]

├─ org.biojavax.bio.seq.RichSequence.class - [JAR]

├─ org.biojavax.bio.seq.RichSequenceHandler.class - [JAR]

├─ org.biojavax.bio.seq.RichSequenceIterator.class - [JAR]

├─ org.biojavax.bio.seq.SimplePosition.class - [JAR]

├─ org.biojavax.bio.seq.SimpleRichFeature.class - [JAR]

├─ org.biojavax.bio.seq.SimpleRichFeatureRelationship.class - [JAR]

├─ org.biojavax.bio.seq.SimpleRichLocation.class - [JAR]

├─ org.biojavax.bio.seq.SimpleRichSequence.class - [JAR]

├─ org.biojavax.bio.seq.ThinRichSequence.class - [JAR]

org.tukaani.xz.lz

├─ org.tukaani.xz.lz.BT4.class - [JAR]

├─ org.tukaani.xz.lz.CRC32Hash.class - [JAR]

├─ org.tukaani.xz.lz.HC4.class - [JAR]

├─ org.tukaani.xz.lz.Hash234.class - [JAR]

├─ org.tukaani.xz.lz.LZDecoder.class - [JAR]

├─ org.tukaani.xz.lz.LZEncoder.class - [JAR]

├─ org.tukaani.xz.lz.Matches.class - [JAR]

org.biojava.bio.program.unigene

├─ org.biojava.bio.program.unigene.FlatFileUnigeneDB.class - [JAR]

├─ org.biojava.bio.program.unigene.FlatFileUnigeneFactory.class - [JAR]

├─ org.biojava.bio.program.unigene.SQLUnigeneDB.class - [JAR]

├─ org.biojava.bio.program.unigene.SQLUnigeneFactory.class - [JAR]

├─ org.biojava.bio.program.unigene.UnigeneCluster.class - [JAR]

├─ org.biojava.bio.program.unigene.UnigeneDB.class - [JAR]

├─ org.biojava.bio.program.unigene.UnigeneFactory.class - [JAR]

├─ org.biojava.bio.program.unigene.UnigeneTools.class - [JAR]

org.biojava.bio.alignment

├─ org.biojava.bio.alignment.Alignment.class - [JAR]

├─ org.biojava.bio.alignment.SimpleAlignment.class - [JAR]

htsjdk.tribble.gff

├─ htsjdk.tribble.gff.Gff3BaseData.class - [JAR]

├─ htsjdk.tribble.gff.Gff3Codec.class - [JAR]

├─ htsjdk.tribble.gff.Gff3Constants.class - [JAR]

├─ htsjdk.tribble.gff.Gff3Feature.class - [JAR]

├─ htsjdk.tribble.gff.Gff3FeatureImpl.class - [JAR]

├─ htsjdk.tribble.gff.Gff3Writer.class - [JAR]

├─ htsjdk.tribble.gff.SequenceRegion.class - [JAR]

org.checkerframework.common.initializedfields.qual

├─ org.checkerframework.common.initializedfields.qual.EnsuresInitializedFields.class - [JAR]

├─ org.checkerframework.common.initializedfields.qual.InitializedFields.class - [JAR]

├─ org.checkerframework.common.initializedfields.qual.InitializedFieldsBottom.class - [JAR]

├─ org.checkerframework.common.initializedfields.qual.PolyInitializedFields.class - [JAR]

org.biojava.utils.automata

├─ org.biojava.utils.automata.ArrayStateMachineToolkit.class - [JAR]

├─ org.biojava.utils.automata.AutomatonException.class - [JAR]

├─ org.biojava.utils.automata.DfaBuilder.class - [JAR]

├─ org.biojava.utils.automata.FiniteAutomaton.class - [JAR]

├─ org.biojava.utils.automata.Nfa.class - [JAR]

├─ org.biojava.utils.automata.NfaBuilder.class - [JAR]

├─ org.biojava.utils.automata.NfaSubModel.class - [JAR]

├─ org.biojava.utils.automata.PatternBlitz.class - [JAR]

├─ org.biojava.utils.automata.PatternListener.class - [JAR]

├─ org.biojava.utils.automata.PatternMaker.class - [JAR]

├─ org.biojava.utils.automata.StateMachineFactory.class - [JAR]

├─ org.biojava.utils.automata.StateMachineInstance.class - [JAR]

├─ org.biojava.utils.automata.StateMachineToolkit.class - [JAR]

htsjdk.tribble.IntervalList

├─ htsjdk.tribble.IntervalList.IntervalListCodec.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.internal

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.internal.Finalizer.class - [JAR]

org.tukaani.xz.delta

├─ org.tukaani.xz.delta.DeltaCoder.class - [JAR]

├─ org.tukaani.xz.delta.DeltaDecoder.class - [JAR]

├─ org.tukaani.xz.delta.DeltaEncoder.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.ArrayBasedCharEscaper.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.ArrayBasedEscaperMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.ArrayBasedUnicodeEscaper.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.CharEscaper.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.CharEscaperBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.Escaper.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.Escapers.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.Platform.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.UnicodeEscaper.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.escape.package-info.class - [JAR]

org.biojava.bio.program.xff

├─ org.biojava.bio.program.xff.BasicXFFHelper.class - [JAR]

├─ org.biojava.bio.program.xff.ElementRecognizer.class - [JAR]

├─ org.biojava.bio.program.xff.FeatureHandler.class - [JAR]

├─ org.biojava.bio.program.xff.LocationHandlerBase.class - [JAR]

├─ org.biojava.bio.program.xff.PropDetailHandler.class - [JAR]

├─ org.biojava.bio.program.xff.PropertyWriter.class - [JAR]

├─ org.biojava.bio.program.xff.StrandedFeatureHandler.class - [JAR]

├─ org.biojava.bio.program.xff.XFFFeatureSetHandler.class - [JAR]

├─ org.biojava.bio.program.xff.XFFHelper.class - [JAR]

├─ org.biojava.bio.program.xff.XFFPartHandlerFactory.class - [JAR]

├─ org.biojava.bio.program.xff.XFFTools.class - [JAR]

├─ org.biojava.bio.program.xff.XFFWriter.class - [JAR]

org.apache.commons.compress.compressors.xz

├─ org.apache.commons.compress.compressors.xz.XZCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.xz.XZCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.xz.XZUtils.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.internal

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.internal.InternalFutureFailureAccess.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.util.concurrent.internal.InternalFutures.class - [JAR]

htsjdk.tribble.util

├─ htsjdk.tribble.util.FTPHelper.class - [JAR]

├─ htsjdk.tribble.util.HTTPHelper.class - [JAR]

├─ htsjdk.tribble.util.LittleEndianInputStream.class - [JAR]

├─ htsjdk.tribble.util.LittleEndianOutputStream.class - [JAR]

├─ htsjdk.tribble.util.MathUtils.class - [JAR]

├─ htsjdk.tribble.util.ParsingUtils.class - [JAR]

├─ htsjdk.tribble.util.RemoteURLHelper.class - [JAR]

├─ htsjdk.tribble.util.TabixUtils.class - [JAR]

├─ htsjdk.tribble.util.URLHelper.class - [JAR]

├─ htsjdk.tribble.util.URLHelperFactory.class - [JAR]

htsjdk.samtools.metrics

├─ htsjdk.samtools.metrics.Header.class - [JAR]

├─ htsjdk.samtools.metrics.MetricBase.class - [JAR]

├─ htsjdk.samtools.metrics.MetricsFile.class - [JAR]

├─ htsjdk.samtools.metrics.StringHeader.class - [JAR]

├─ htsjdk.samtools.metrics.VersionHeader.class - [JAR]

org.biojava.bio.program.fastq

├─ org.biojava.bio.program.fastq.AbstractFastqReader.class - [JAR]

├─ org.biojava.bio.program.fastq.AbstractFastqWriter.class - [JAR]

├─ org.biojava.bio.program.fastq.Fastq.class - [JAR]

├─ org.biojava.bio.program.fastq.FastqBuilder.class - [JAR]

├─ org.biojava.bio.program.fastq.FastqParser.class - [JAR]

├─ org.biojava.bio.program.fastq.FastqReader.class - [JAR]

├─ org.biojava.bio.program.fastq.FastqTools.class - [JAR]

├─ org.biojava.bio.program.fastq.FastqVariant.class - [JAR]

├─ org.biojava.bio.program.fastq.FastqWriter.class - [JAR]

├─ org.biojava.bio.program.fastq.IlluminaFastqReader.class - [JAR]

├─ org.biojava.bio.program.fastq.IlluminaFastqWriter.class - [JAR]

├─ org.biojava.bio.program.fastq.ParseListener.class - [JAR]

├─ org.biojava.bio.program.fastq.SangerFastqReader.class - [JAR]

├─ org.biojava.bio.program.fastq.SangerFastqWriter.class - [JAR]

├─ org.biojava.bio.program.fastq.SolexaFastqReader.class - [JAR]

├─ org.biojava.bio.program.fastq.SolexaFastqWriter.class - [JAR]

├─ org.biojava.bio.program.fastq.StreamListener.class - [JAR]

├─ org.biojava.bio.program.fastq.StreamingFastqParser.class - [JAR]

org.checkerframework.checker.fenum.qual

├─ org.checkerframework.checker.fenum.qual.AwtAlphaCompositingRule.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.AwtColorSpace.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.AwtCursorType.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.AwtFlowLayout.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.Fenum.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.FenumBottom.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.FenumTop.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.FenumUnqualified.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.PolyFenum.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingBoxOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingCompassDirection.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingElementOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingHorizontalOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingSplitPaneOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingTextOrientation.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingTitleJustification.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingTitlePosition.class - [JAR]

├─ org.checkerframework.checker.fenum.qual.SwingVerticalOrientation.class - [JAR]

org.apache.commons.compress.parallel

├─ org.apache.commons.compress.parallel.FileBasedScatterGatherBackingStore.class - [JAR]

├─ org.apache.commons.compress.parallel.InputStreamSupplier.class - [JAR]

├─ org.apache.commons.compress.parallel.ScatterGatherBackingStore.class - [JAR]

├─ org.apache.commons.compress.parallel.ScatterGatherBackingStoreSupplier.class - [JAR]

htsjdk.samtools.fastq

├─ htsjdk.samtools.fastq.AsyncFastqWriter.class - [JAR]

├─ htsjdk.samtools.fastq.BasicFastqWriter.class - [JAR]

├─ htsjdk.samtools.fastq.FastqConstants.class - [JAR]

├─ htsjdk.samtools.fastq.FastqEncoder.class - [JAR]

├─ htsjdk.samtools.fastq.FastqReader.class - [JAR]

├─ htsjdk.samtools.fastq.FastqRecord.class - [JAR]

├─ htsjdk.samtools.fastq.FastqWriter.class - [JAR]

├─ htsjdk.samtools.fastq.FastqWriterFactory.class - [JAR]

com.google.thirdparty.publicsuffix

├─ com.google.thirdparty.publicsuffix.PublicSuffixPatterns.class - [JAR]

├─ com.google.thirdparty.publicsuffix.PublicSuffixType.class - [JAR]

├─ com.google.thirdparty.publicsuffix.TrieParser.class - [JAR]

javax.annotation.meta

├─ javax.annotation.meta.Exclusive.class - [JAR]

├─ javax.annotation.meta.Exhaustive.class - [JAR]

├─ javax.annotation.meta.TypeQualifier.class - [JAR]

├─ javax.annotation.meta.TypeQualifierDefault.class - [JAR]

├─ javax.annotation.meta.TypeQualifierNickname.class - [JAR]

├─ javax.annotation.meta.TypeQualifierValidator.class - [JAR]

├─ javax.annotation.meta.When.class - [JAR]

org.tukaani.xz.lzma

├─ org.tukaani.xz.lzma.LZMACoder.class - [JAR]

├─ org.tukaani.xz.lzma.LZMADecoder.class - [JAR]

├─ org.tukaani.xz.lzma.LZMAEncoder.class - [JAR]

├─ org.tukaani.xz.lzma.LZMAEncoderFast.class - [JAR]

├─ org.tukaani.xz.lzma.LZMAEncoderNormal.class - [JAR]

├─ org.tukaani.xz.lzma.Optimum.class - [JAR]

├─ org.tukaani.xz.lzma.State.class - [JAR]

org.biojava.bio.seq.io

├─ org.biojava.bio.seq.io.AbstractGenEmblFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.AlignIOConstants.class - [JAR]

├─ org.biojava.bio.seq.io.AlignmentFormat.class - [JAR]

├─ org.biojava.bio.seq.io.AlternateTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.CharacterTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.ChunkedSymbolListFactory.class - [JAR]

├─ org.biojava.bio.seq.io.CrossProductTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.DoubleTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.EmblFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.EmblLikeFormat.class - [JAR]

├─ org.biojava.bio.seq.io.EmblLikeLocationParser.class - [JAR]

├─ org.biojava.bio.seq.io.EmblProcessor.class - [JAR]

├─ org.biojava.bio.seq.io.EmblReferenceComparator.class - [JAR]

├─ org.biojava.bio.seq.io.FastaAlignmentFormat.class - [JAR]

├─ org.biojava.bio.seq.io.FastaDescriptionLineParser.class - [JAR]

├─ org.biojava.bio.seq.io.FastaFormat.class - [JAR]

├─ org.biojava.bio.seq.io.FeatureTableParser.class - [JAR]

├─ org.biojava.bio.seq.io.GAMEFormat.class - [JAR]

├─ org.biojava.bio.seq.io.GenEmblFeatureComparator.class - [JAR]

├─ org.biojava.bio.seq.io.GenEmblPropertyComparator.class - [JAR]

├─ org.biojava.bio.seq.io.GenbankContext.class - [JAR]

├─ org.biojava.bio.seq.io.GenbankFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.GenbankFormat.class - [JAR]

├─ org.biojava.bio.seq.io.GenbankProcessor.class - [JAR]

├─ org.biojava.bio.seq.io.GenbankXmlFormat.class - [JAR]

├─ org.biojava.bio.seq.io.GenpeptFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.GenpeptFormat.class - [JAR]

├─ org.biojava.bio.seq.io.IntegerTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.MSFAlignmentFormat.class - [JAR]

├─ org.biojava.bio.seq.io.NameTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.OrganismParser.class - [JAR]

├─ org.biojava.bio.seq.io.ParseException.class - [JAR]

├─ org.biojava.bio.seq.io.ProteinRefSeqFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.ProteinRefSeqProcessor.class - [JAR]

├─ org.biojava.bio.seq.io.ReferenceAnnotation.class - [JAR]

├─ org.biojava.bio.seq.io.SeqFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.SeqIOAdapter.class - [JAR]

├─ org.biojava.bio.seq.io.SeqIOConstants.class - [JAR]

├─ org.biojava.bio.seq.io.SeqIOEventEmitter.class - [JAR]

├─ org.biojava.bio.seq.io.SeqIOFilter.class - [JAR]

├─ org.biojava.bio.seq.io.SeqIOListener.class - [JAR]

├─ org.biojava.bio.seq.io.SeqIOTools.class - [JAR]

├─ org.biojava.bio.seq.io.SequenceBuilder.class - [JAR]

├─ org.biojava.bio.seq.io.SequenceBuilderBase.class - [JAR]

├─ org.biojava.bio.seq.io.SequenceBuilderFactory.class - [JAR]

├─ org.biojava.bio.seq.io.SequenceBuilderFilter.class - [JAR]

├─ org.biojava.bio.seq.io.SequenceFormat.class - [JAR]

├─ org.biojava.bio.seq.io.SimpleAssemblyBuilder.class - [JAR]

├─ org.biojava.bio.seq.io.SimpleSequenceBuilder.class - [JAR]

├─ org.biojava.bio.seq.io.SmartSequenceBuilder.class - [JAR]

├─ org.biojava.bio.seq.io.StreamParser.class - [JAR]

├─ org.biojava.bio.seq.io.StreamReader.class - [JAR]

├─ org.biojava.bio.seq.io.StreamWriter.class - [JAR]

├─ org.biojava.bio.seq.io.SubIntegerTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.SwissprotFeatureTableParser.class - [JAR]

├─ org.biojava.bio.seq.io.SwissprotFileFormer.class - [JAR]

├─ org.biojava.bio.seq.io.SwissprotProcessor.class - [JAR]

├─ org.biojava.bio.seq.io.SymbolListCharSequence.class - [JAR]

├─ org.biojava.bio.seq.io.SymbolReader.class - [JAR]

├─ org.biojava.bio.seq.io.SymbolTokenization.class - [JAR]

├─ org.biojava.bio.seq.io.WordTokenization.class - [JAR]

org.biojava.bio.molbio

├─ org.biojava.bio.molbio.Composition.class - [JAR]

├─ org.biojava.bio.molbio.DNAComposition.class - [JAR]

├─ org.biojava.bio.molbio.RestrictionEnzyme.class - [JAR]

├─ org.biojava.bio.molbio.RestrictionEnzymeManager.class - [JAR]

├─ org.biojava.bio.molbio.RestrictionMapper.class - [JAR]

├─ org.biojava.bio.molbio.RestrictionSite.class - [JAR]

├─ org.biojava.bio.molbio.RestrictionSiteFinder.class - [JAR]

org.biojava.utils.candy

├─ org.biojava.utils.candy.CandyEntry.class - [JAR]

├─ org.biojava.utils.candy.CandyException.class - [JAR]

├─ org.biojava.utils.candy.CandyFinder.class - [JAR]

├─ org.biojava.utils.candy.CandyVocabulary.class - [JAR]

org.biojava.bio.dp.twohead

├─ org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor.class - [JAR]

├─ org.biojava.bio.dp.twohead.BackMatrixPairDPCursor.class - [JAR]

├─ org.biojava.bio.dp.twohead.Cell.class - [JAR]

├─ org.biojava.bio.dp.twohead.CellCalculator.class - [JAR]

├─ org.biojava.bio.dp.twohead.CellCalculatorFactory.class - [JAR]

├─ org.biojava.bio.dp.twohead.CellCalculatorFactoryMaker.class - [JAR]

├─ org.biojava.bio.dp.twohead.DPCompiler.class - [JAR]

├─ org.biojava.bio.dp.twohead.DPInterpreter.class - [JAR]

├─ org.biojava.bio.dp.twohead.EmissionCache.class - [JAR]

├─ org.biojava.bio.dp.twohead.LightPairDPCursor.class - [JAR]

├─ org.biojava.bio.dp.twohead.MatrixPairDPCursor.class - [JAR]

├─ org.biojava.bio.dp.twohead.PairDPCursor.class - [JAR]

├─ org.biojava.bio.dp.twohead.PairDPMatrix.class - [JAR]

├─ org.biojava.bio.dp.twohead.PairwiseDP.class - [JAR]

htsjdk.samtools.cram.encoding.readfeatures

├─ htsjdk.samtools.cram.encoding.readfeatures.BaseQualityScore.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.Bases.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.Deletion.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.HardClip.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.InsertBase.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.Insertion.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.Padding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.ReadBase.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.ReadFeature.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.RefSkip.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.Scores.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.SoftClip.class - [JAR]

├─ htsjdk.samtools.cram.encoding.readfeatures.Substitution.class - [JAR]

org.biojava.utils.net

├─ org.biojava.utils.net.URLFactory.class - [JAR]

org.biojava.bio.program.gff

├─ org.biojava.bio.program.gff.GFFComparator.class - [JAR]

├─ org.biojava.bio.program.gff.GFFDocumentHandler.class - [JAR]

├─ org.biojava.bio.program.gff.GFFEntrySet.class - [JAR]

├─ org.biojava.bio.program.gff.GFFErrorHandler.class - [JAR]

├─ org.biojava.bio.program.gff.GFFFilterer.class - [JAR]

├─ org.biojava.bio.program.gff.GFFParser.class - [JAR]

├─ org.biojava.bio.program.gff.GFFRecord.class - [JAR]

├─ org.biojava.bio.program.gff.GFFRecordFilter.class - [JAR]

├─ org.biojava.bio.program.gff.GFFTools.class - [JAR]

├─ org.biojava.bio.program.gff.GFFWriter.class - [JAR]

├─ org.biojava.bio.program.gff.IgnoreRecordException.class - [JAR]

├─ org.biojava.bio.program.gff.SequencesAsGFF.class - [JAR]

├─ org.biojava.bio.program.gff.SimpleGFFRecord.class - [JAR]

org.apache.commons.compress.compressors.deflate

├─ org.apache.commons.compress.compressors.deflate.DeflateCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.deflate.DeflateCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.deflate.DeflateParameters.class - [JAR]

org.biojavax.bio.db.ncbi

├─ org.biojavax.bio.db.ncbi.GenbankRichSequenceDB.class - [JAR]

├─ org.biojavax.bio.db.ncbi.GenpeptRichSequenceDB.class - [JAR]

org.biojava.bio.seq.io.agave

├─ org.biojava.bio.seq.io.agave.AGAVEAltIdsPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEAnnotFilter.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEAnnotFilterFactory.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEAnnotationsHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEAssemblyHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEBioSeqCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEBioSeqHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEBioSequenceHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVECallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVECdsHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEChromosomeCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEChromosomeHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEClassificationHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVECompResultHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEComputationHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEContigCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEContigHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEDbId.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEDbIdCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEDbIdPropCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEDbIdPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEDescPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEElementIdPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEEvidenceCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEEvidenceHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEExonsPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEFeatureCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEFragmentOrderHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEFragmentOrientationHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEGeneHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEIdAlias.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEIdAliasCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEIdAliasPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEKeywordPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMapLocation.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMapLocationPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMapPosition.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMapPositionPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMatchAlignPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMatchDescPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMatchRegion.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMatchRegionPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEMrnaHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVENotePropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEPredictedProteinHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEProperty.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEQualifierPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEQueryRegion.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEQueryRegionPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVERelatedAnnot.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVERelatedAnnotPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEResultGroupHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEResultPropertyPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVESciPropertyPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVESeqFeatureHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVESeqLocationPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVESeqMapHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVESeqPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVETranscriptHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEUnorderedFragmentsHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEViewPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEXref.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEXrefCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEXrefPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEXrefPropPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEXrefs.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AGAVEXrefsPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.Agave2AgaveAnnotFilter.class - [JAR]

├─ org.biojava.bio.seq.io.agave.AgaveWriter.class - [JAR]

├─ org.biojava.bio.seq.io.agave.DelegationManager.class - [JAR]

├─ org.biojava.bio.seq.io.agave.ElementRecognizer.class - [JAR]

├─ org.biojava.bio.seq.io.agave.Embl2AgaveAnnotFilter.class - [JAR]

├─ org.biojava.bio.seq.io.agave.PCDATAFilterWriter.class - [JAR]

├─ org.biojava.bio.seq.io.agave.SAX2StAXAdaptor.class - [JAR]

├─ org.biojava.bio.seq.io.agave.SequenceHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.SimpleAnnotFilter.class - [JAR]

├─ org.biojava.bio.seq.io.agave.StAXContentHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.StAXContentHandlerBase.class - [JAR]

├─ org.biojava.bio.seq.io.agave.StAXFeatureHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.StAXHandlerFactory.class - [JAR]

├─ org.biojava.bio.seq.io.agave.StAXPropertyHandler.class - [JAR]

├─ org.biojava.bio.seq.io.agave.UtilHelper.class - [JAR]

org.apache.commons.compress.archivers.zip

├─ org.apache.commons.compress.archivers.zip.AbstractUnicodeExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.AsiExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.BinaryTree.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.BitStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.CharsetAccessor.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.CircularBuffer.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ExplodingInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ExtraFieldParsingBehavior.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ExtraFieldUtils.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.GeneralPurposeBit.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.InflaterInputStreamWithStatistics.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.JarMarker.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.NioZipEncoding.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.PKWareExtraHeader.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ParallelScatterZipCreator.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ResourceAlignmentExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ScatterStatistics.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ScatterZipOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.StreamCompressor.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnicodeCommentExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnicodePathExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnixStat.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnparseableExtraFieldBehavior.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnparseableExtraFieldData.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnrecognizedExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnshrinkingInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.UnsupportedZipFeatureException.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X000A_NTFS.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X0014_X509Certificates.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X0015_CertificateIdForFile.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X0016_CertificateIdForCentralDirectory.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X0017_StrongEncryptionHeader.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X0019_EncryptionRecipientCertificateList.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X5455_ExtendedTimestamp.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.X7875_NewUnix.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Zip64ExtendedInformationExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Zip64Mode.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.Zip64RequiredException.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntry.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntryPredicate.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntryRequest.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveEntryRequestSupplier.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveInputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipArchiveOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipConstants.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipEightByteInteger.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipEncoding.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipEncodingHelper.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipExtraField.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipFile.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipLong.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipMethod.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipShort.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipSplitOutputStream.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipSplitReadOnlySeekableByteChannel.class - [JAR]

├─ org.apache.commons.compress.archivers.zip.ZipUtil.class - [JAR]

org.biojavax.bio.seq.io

├─ org.biojavax.bio.seq.io.DebuggingRichSeqIOListener.class - [JAR]

├─ org.biojavax.bio.seq.io.EMBLFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.EMBLxmlFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.FastaFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.FastaHeader.class - [JAR]

├─ org.biojavax.bio.seq.io.GenbankFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.GenbankLocationParser.class - [JAR]

├─ org.biojavax.bio.seq.io.HashedFastaIterator.class - [JAR]

├─ org.biojavax.bio.seq.io.INSDseqFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.MyRichSeqIOListener.class - [JAR]

├─ org.biojavax.bio.seq.io.RichSeqIOAdapter.class - [JAR]

├─ org.biojavax.bio.seq.io.RichSeqIOListener.class - [JAR]

├─ org.biojavax.bio.seq.io.RichSequenceBuilder.class - [JAR]

├─ org.biojavax.bio.seq.io.RichSequenceBuilderFactory.class - [JAR]

├─ org.biojavax.bio.seq.io.RichSequenceFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.RichStreamReader.class - [JAR]

├─ org.biojavax.bio.seq.io.RichStreamWriter.class - [JAR]

├─ org.biojavax.bio.seq.io.SimpleRichSequenceBuilder.class - [JAR]

├─ org.biojavax.bio.seq.io.SimpleRichSequenceBuilderFactory.class - [JAR]

├─ org.biojavax.bio.seq.io.UniProtCommentParser.class - [JAR]

├─ org.biojavax.bio.seq.io.UniProtFormat.class - [JAR]

├─ org.biojavax.bio.seq.io.UniProtLocationParser.class - [JAR]

├─ org.biojavax.bio.seq.io.UniProtXMLFormat.class - [JAR]

org.biojava.bio.dp.onehead

├─ org.biojava.bio.dp.onehead.AbstractCursor.class - [JAR]

├─ org.biojava.bio.dp.onehead.DPCursor.class - [JAR]

├─ org.biojava.bio.dp.onehead.MatrixCursor.class - [JAR]

├─ org.biojava.bio.dp.onehead.SingleDP.class - [JAR]

├─ org.biojava.bio.dp.onehead.SingleDPMatrix.class - [JAR]

├─ org.biojava.bio.dp.onehead.SmallCursor.class - [JAR]

org.checkerframework.checker.interning.qual

├─ org.checkerframework.checker.interning.qual.CompareToMethod.class - [JAR]

├─ org.checkerframework.checker.interning.qual.EqualsMethod.class - [JAR]

├─ org.checkerframework.checker.interning.qual.FindDistinct.class - [JAR]

├─ org.checkerframework.checker.interning.qual.InternMethod.class - [JAR]

├─ org.checkerframework.checker.interning.qual.Interned.class - [JAR]

├─ org.checkerframework.checker.interning.qual.InternedDistinct.class - [JAR]

├─ org.checkerframework.checker.interning.qual.PolyInterned.class - [JAR]

├─ org.checkerframework.checker.interning.qual.UnknownInterned.class - [JAR]

├─ org.checkerframework.checker.interning.qual.UsesObjectEquals.class - [JAR]

org.apache.commons.compress.harmony.unpack200.bytecode.forms

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ByteCodeForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ByteForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ClassRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ClassSpecificReferenceForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.DoubleForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.FieldRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.FloatRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.IMethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.IincForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.InitMethodReferenceForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.IntRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.LabelForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.LocalForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.LongForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.LookupSwitchForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.MethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.MultiANewArrayForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.NarrowClassRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.NewClassRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.NewInitMethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.NoArgumentForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ReferenceForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ShortForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.SingleByteReferenceForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.StringRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.SuperFieldRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.SuperInitMethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.SuperMethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.SwitchForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.TableSwitchForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ThisFieldRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ThisInitMethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.ThisMethodRefForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.VariableInstructionForm.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.bytecode.forms.WideForm.class - [JAR]

org.apache.commons.compress.compressors.deflate64

├─ org.apache.commons.compress.compressors.deflate64.Deflate64CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.deflate64.HuffmanDecoder.class - [JAR]

├─ org.apache.commons.compress.compressors.deflate64.HuffmanState.class - [JAR]

org.apache.commons.compress

├─ org.apache.commons.compress.MemoryLimitException.class - [JAR]

├─ org.apache.commons.compress.PasswordRequiredException.class - [JAR]

org.biojavax.ga.functions

├─ org.biojavax.ga.functions.AbstractCrossOverFunction.class - [JAR]

├─ org.biojavax.ga.functions.AbstractMutationFunction.class - [JAR]

├─ org.biojavax.ga.functions.CrossOverFunction.class - [JAR]

├─ org.biojavax.ga.functions.FitnessFunction.class - [JAR]

├─ org.biojavax.ga.functions.GACross.class - [JAR]

├─ org.biojavax.ga.functions.GACrossResult.class - [JAR]

├─ org.biojavax.ga.functions.MutationFunction.class - [JAR]

├─ org.biojavax.ga.functions.OrderCrossover.class - [JAR]

├─ org.biojavax.ga.functions.ProportionalSelection.class - [JAR]

├─ org.biojavax.ga.functions.SelectionFunction.class - [JAR]

├─ org.biojavax.ga.functions.SimpleCrossOverFunction.class - [JAR]

├─ org.biojavax.ga.functions.SimpleGACrossResult.class - [JAR]

├─ org.biojavax.ga.functions.SimpleMutationFunction.class - [JAR]

├─ org.biojavax.ga.functions.SwapMutationFunction.class - [JAR]

├─ org.biojavax.ga.functions.TournamentSelection.class - [JAR]

org.apache.commons.codec

├─ org.apache.commons.codec.BinaryDecoder.class - [JAR]

├─ org.apache.commons.codec.BinaryEncoder.class - [JAR]

├─ org.apache.commons.codec.CharEncoding.class - [JAR]

├─ org.apache.commons.codec.Charsets.class - [JAR]

├─ org.apache.commons.codec.CodecPolicy.class - [JAR]

├─ org.apache.commons.codec.Decoder.class - [JAR]

├─ org.apache.commons.codec.DecoderException.class - [JAR]

├─ org.apache.commons.codec.Encoder.class - [JAR]

├─ org.apache.commons.codec.EncoderException.class - [JAR]

├─ org.apache.commons.codec.Resources.class - [JAR]

├─ org.apache.commons.codec.StringDecoder.class - [JAR]

├─ org.apache.commons.codec.StringEncoder.class - [JAR]

├─ org.apache.commons.codec.StringEncoderComparator.class - [JAR]

org.biojavax.bio.alignment

├─ org.biojavax.bio.alignment.RemotePairwiseAlignmentOutputProperties.class - [JAR]

├─ org.biojavax.bio.alignment.RemotePairwiseAlignmentProperties.class - [JAR]

├─ org.biojavax.bio.alignment.RemotePairwiseAlignmentService.class - [JAR]

org.biojava.bio.seq.io.filterxml

├─ org.biojava.bio.seq.io.filterxml.QName.class - [JAR]

├─ org.biojava.bio.seq.io.filterxml.XMLAnnotationTypeHandler.class - [JAR]

├─ org.biojava.bio.seq.io.filterxml.XMLAnnotationTypeWriter.class - [JAR]

├─ org.biojava.bio.seq.io.filterxml.XMLFilterHandler.class - [JAR]

├─ org.biojava.bio.seq.io.filterxml.XMLFilterWriter.class - [JAR]

org.dishevelled.graph

├─ org.dishevelled.graph.Edge.class - [JAR]

├─ org.dishevelled.graph.Graph.class - [JAR]

├─ org.dishevelled.graph.Node.class - [JAR]

org.apache.commons.compress.java.util.jar

├─ org.apache.commons.compress.java.util.jar.Pack200.class - [JAR]

org.biojava.bio.program.indexdb

├─ org.biojava.bio.program.indexdb.BioStore.class - [JAR]

├─ org.biojava.bio.program.indexdb.BioStoreFactory.class - [JAR]

├─ org.biojava.bio.program.indexdb.CacheList.class - [JAR]

├─ org.biojava.bio.program.indexdb.ConfigFile.class - [JAR]

├─ org.biojava.bio.program.indexdb.IndexStore.class - [JAR]

├─ org.biojava.bio.program.indexdb.IndexTools.class - [JAR]

├─ org.biojava.bio.program.indexdb.KeyPair.class - [JAR]

├─ org.biojava.bio.program.indexdb.PrimaryIDList.class - [JAR]

├─ org.biojava.bio.program.indexdb.PropertiesAnnotation.class - [JAR]

├─ org.biojava.bio.program.indexdb.Record.class - [JAR]

├─ org.biojava.bio.program.indexdb.SearchableFileAsList.class - [JAR]

├─ org.biojava.bio.program.indexdb.SearchableList.class - [JAR]

├─ org.biojava.bio.program.indexdb.SecondaryFileAsList.class - [JAR]

org.biojava.bio.dp

├─ org.biojava.bio.dp.AbstractTrainer.class - [JAR]

├─ org.biojava.bio.dp.BackPointer.class - [JAR]

├─ org.biojava.bio.dp.BaumWelchSampler.class - [JAR]

├─ org.biojava.bio.dp.BaumWelchTrainer.class - [JAR]

├─ org.biojava.bio.dp.DP.class - [JAR]

├─ org.biojava.bio.dp.DPFactory.class - [JAR]

├─ org.biojava.bio.dp.DPMatrix.class - [JAR]

├─ org.biojava.bio.dp.DotState.class - [JAR]

├─ org.biojava.bio.dp.EmissionState.class - [JAR]

├─ org.biojava.bio.dp.FlatModel.class - [JAR]

├─ org.biojava.bio.dp.HMMTrainer.class - [JAR]

├─ org.biojava.bio.dp.IllegalTransitionException.class - [JAR]

├─ org.biojava.bio.dp.MagicalState.class - [JAR]

├─ org.biojava.bio.dp.MarkovModel.class - [JAR]

├─ org.biojava.bio.dp.ModelInState.class - [JAR]

├─ org.biojava.bio.dp.ModelTrainer.class - [JAR]

├─ org.biojava.bio.dp.ProfileHMM.class - [JAR]

├─ org.biojava.bio.dp.ScoreType.class - [JAR]

├─ org.biojava.bio.dp.SimpleDotState.class - [JAR]

├─ org.biojava.bio.dp.SimpleEmissionState.class - [JAR]

├─ org.biojava.bio.dp.SimpleHMMTrainer.class - [JAR]

├─ org.biojava.bio.dp.SimpleMarkovModel.class - [JAR]

├─ org.biojava.bio.dp.SimpleModelInState.class - [JAR]

├─ org.biojava.bio.dp.SimpleModelTrainer.class - [JAR]

├─ org.biojava.bio.dp.SimpleStatePath.class - [JAR]

├─ org.biojava.bio.dp.SimpleWeightMatrix.class - [JAR]

├─ org.biojava.bio.dp.State.class - [JAR]

├─ org.biojava.bio.dp.StatePath.class - [JAR]

├─ org.biojava.bio.dp.StoppingCriteria.class - [JAR]

├─ org.biojava.bio.dp.Trainable.class - [JAR]

├─ org.biojava.bio.dp.TrainerTransition.class - [JAR]

├─ org.biojava.bio.dp.TrainingAlgorithm.class - [JAR]

├─ org.biojava.bio.dp.Transition.class - [JAR]

├─ org.biojava.bio.dp.TransitionTrainer.class - [JAR]

├─ org.biojava.bio.dp.WMAsMM.class - [JAR]

├─ org.biojava.bio.dp.WeightMatrix.class - [JAR]

├─ org.biojava.bio.dp.WeightMatrixAnnotator.class - [JAR]

├─ org.biojava.bio.dp.XmlMarkovModel.class - [JAR]

org.apache.commons.compress.archivers.examples

├─ org.apache.commons.compress.archivers.examples.Archiver.class - [JAR]

├─ org.apache.commons.compress.archivers.examples.CloseableConsumer.class - [JAR]

├─ org.apache.commons.compress.archivers.examples.CloseableConsumerAdapter.class - [JAR]

├─ org.apache.commons.compress.archivers.examples.Expander.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractBaseGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractDirectedNetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractGraphBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractNetwork.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractUndirectedNetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.AbstractValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.BaseGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.DirectedGraphConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.DirectedMultiNetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.DirectedNetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.EdgesConnecting.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ElementOrder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.EndpointPair.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.EndpointPairIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ForwardingGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ForwardingNetwork.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ForwardingValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.Graph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.GraphBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.GraphConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.GraphConstants.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.Graphs.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ImmutableGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ImmutableNetwork.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ImmutableValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.IncidentEdgeSet.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.MapIteratorCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.MapRetrievalCache.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.MultiEdgesConnecting.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.MutableGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.MutableNetwork.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.MutableValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.Network.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.NetworkBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.NetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.PredecessorsFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.StandardMutableGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.StandardMutableNetwork.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.StandardMutableValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.StandardNetwork.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.StandardValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.SuccessorsFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.Traverser.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.UndirectedGraphConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.UndirectedMultiNetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.UndirectedNetworkConnections.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ValueGraph.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.ValueGraphBuilder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.graph.package-info.class - [JAR]

org.xerial.snappy.buffer

├─ org.xerial.snappy.buffer.BufferAllocator.class - [JAR]

├─ org.xerial.snappy.buffer.BufferAllocatorFactory.class - [JAR]

├─ org.xerial.snappy.buffer.CachedBufferAllocator.class - [JAR]

├─ org.xerial.snappy.buffer.DefaultBufferAllocator.class - [JAR]

org.checkerframework.checker.regex.qual

├─ org.checkerframework.checker.regex.qual.PartialRegex.class - [JAR]

├─ org.checkerframework.checker.regex.qual.PolyRegex.class - [JAR]

├─ org.checkerframework.checker.regex.qual.Regex.class - [JAR]

├─ org.checkerframework.checker.regex.qual.RegexBottom.class - [JAR]

├─ org.checkerframework.checker.regex.qual.UnknownRegex.class - [JAR]

org.biojava.bio.seq.impl

├─ org.biojava.bio.seq.impl.AssembledSymbolList.class - [JAR]

├─ org.biojava.bio.seq.impl.DummySequence.class - [JAR]

├─ org.biojava.bio.seq.impl.FeatureImpl.class - [JAR]

├─ org.biojava.bio.seq.impl.LazyFilterFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.impl.NewAssembledSymbolList.class - [JAR]

├─ org.biojava.bio.seq.impl.RevCompSequence.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleFeature.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleFramedFeature.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleGappedSequence.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleHomologyFeature.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleRemoteFeature.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleRestrictionSite.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleSequence.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleSequenceFactory.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleSimilarityPairFeature.class - [JAR]

├─ org.biojava.bio.seq.impl.SimpleStrandedFeature.class - [JAR]

├─ org.biojava.bio.seq.impl.SubSequence.class - [JAR]

├─ org.biojava.bio.seq.impl.TemplateUtils.class - [JAR]

├─ org.biojava.bio.seq.impl.ViewSequence.class - [JAR]

org.biojava.bio.program.gff3

├─ org.biojava.bio.program.gff3.GFF3DocumentHandler.class - [JAR]

├─ org.biojava.bio.program.gff3.GFF3Parser.class - [JAR]

├─ org.biojava.bio.program.gff3.GFF3Record.class - [JAR]

com.github.luben.zstd.util

├─ com.github.luben.zstd.util.Native.class - [JAR]

├─ com.github.luben.zstd.util.ZstdVersion.class - [JAR]

org.xerial.snappy

├─ org.xerial.snappy.BitShuffle.class - [JAR]

├─ org.xerial.snappy.BitShuffleNative.class - [JAR]

├─ org.xerial.snappy.BitShuffleType.class - [JAR]

├─ org.xerial.snappy.OSInfo.class - [JAR]

├─ org.xerial.snappy.PureJavaCrc32C.class - [JAR]

├─ org.xerial.snappy.Snappy.class - [JAR]

├─ org.xerial.snappy.SnappyApi.class - [JAR]

├─ org.xerial.snappy.SnappyBundleActivator.class - [JAR]

├─ org.xerial.snappy.SnappyCodec.class - [JAR]

├─ org.xerial.snappy.SnappyError.class - [JAR]

├─ org.xerial.snappy.SnappyErrorCode.class - [JAR]

├─ org.xerial.snappy.SnappyException.class - [JAR]

├─ org.xerial.snappy.SnappyFramed.class - [JAR]

├─ org.xerial.snappy.SnappyFramedInputStream.class - [JAR]

├─ org.xerial.snappy.SnappyFramedOutputStream.class - [JAR]

├─ org.xerial.snappy.SnappyHadoopCompatibleOutputStream.class - [JAR]

├─ org.xerial.snappy.SnappyIOException.class - [JAR]

├─ org.xerial.snappy.SnappyInputStream.class - [JAR]

├─ org.xerial.snappy.SnappyLoader.class - [JAR]

├─ org.xerial.snappy.SnappyNative.class - [JAR]

├─ org.xerial.snappy.SnappyOutputStream.class - [JAR]

org.biojava.ontology

├─ org.biojava.ontology.AbstractTerm.class - [JAR]

├─ org.biojava.ontology.AlreadyExistsException.class - [JAR]

├─ org.biojava.ontology.DefaultOps.class - [JAR]

├─ org.biojava.ontology.IntegerOntology.class - [JAR]

├─ org.biojava.ontology.InvalidTermException.class - [JAR]

├─ org.biojava.ontology.OntoTools.class - [JAR]

├─ org.biojava.ontology.Ontology.class - [JAR]

├─ org.biojava.ontology.OntologyException.class - [JAR]

├─ org.biojava.ontology.OntologyFactory.class - [JAR]

├─ org.biojava.ontology.OntologyOps.class - [JAR]

├─ org.biojava.ontology.OntologyTerm.class - [JAR]

├─ org.biojava.ontology.RemoteTerm.class - [JAR]

├─ org.biojava.ontology.Synonym.class - [JAR]

├─ org.biojava.ontology.Term.class - [JAR]

├─ org.biojava.ontology.Triple.class - [JAR]

├─ org.biojava.ontology.Variable.class - [JAR]

htsjdk.samtools.cram.encoding.core

├─ htsjdk.samtools.cram.encoding.core.BetaIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.BetaIntegerEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.CanonicalHuffmanByteCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.CanonicalHuffmanByteEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.CanonicalHuffmanIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.CanonicalHuffmanIntegerEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.CoreCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.GammaIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.GammaIntegerEncoding.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.SubexponentialIntegerCodec.class - [JAR]

├─ htsjdk.samtools.cram.encoding.core.SubexponentialIntegerEncoding.class - [JAR]

htsjdk.samtools.util.zip

├─ htsjdk.samtools.util.zip.DeflaterFactory.class - [JAR]

├─ htsjdk.samtools.util.zip.InflaterFactory.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.html

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.html.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.html.HtmlEscapers.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.html.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.html.package-info.class - [JAR]

org.checkerframework.common.value.qual

├─ org.checkerframework.common.value.qual.ArrayLen.class - [JAR]

├─ org.checkerframework.common.value.qual.ArrayLenRange.class - [JAR]

├─ org.checkerframework.common.value.qual.BoolVal.class - [JAR]

├─ org.checkerframework.common.value.qual.BottomVal.class - [JAR]

├─ org.checkerframework.common.value.qual.DoubleVal.class - [JAR]

├─ org.checkerframework.common.value.qual.EnsuresMinLenIf.class - [JAR]

├─ org.checkerframework.common.value.qual.EnumVal.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRange.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRangeFromGTENegativeOne.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRangeFromNonNegative.class - [JAR]

├─ org.checkerframework.common.value.qual.IntRangeFromPositive.class - [JAR]

├─ org.checkerframework.common.value.qual.IntVal.class - [JAR]

├─ org.checkerframework.common.value.qual.MatchesRegex.class - [JAR]

├─ org.checkerframework.common.value.qual.MinLen.class - [JAR]

├─ org.checkerframework.common.value.qual.MinLenFieldInvariant.class - [JAR]

├─ org.checkerframework.common.value.qual.PolyValue.class - [JAR]

├─ org.checkerframework.common.value.qual.StaticallyExecutable.class - [JAR]

├─ org.checkerframework.common.value.qual.StringVal.class - [JAR]

├─ org.checkerframework.common.value.qual.UnknownVal.class - [JAR]

org.biojava.bio.seq.projection

├─ org.biojava.bio.seq.projection.ProjectedFeature.class - [JAR]

├─ org.biojava.bio.seq.projection.ProjectedFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.projection.Projection.class - [JAR]

├─ org.biojava.bio.seq.projection.ProjectionContext.class - [JAR]

├─ org.biojava.bio.seq.projection.ProjectionEngine.class - [JAR]

├─ org.biojava.bio.seq.projection.ProjectionUtils.class - [JAR]

├─ org.biojava.bio.seq.projection.ReparentContext.class - [JAR]

├─ org.biojava.bio.seq.projection.TranslateFlipContext.class - [JAR]

org.checkerframework.checker.guieffect.qual

├─ org.checkerframework.checker.guieffect.qual.AlwaysSafe.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.PolyUI.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.PolyUIEffect.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.PolyUIType.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.SafeEffect.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.SafeType.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UI.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UIEffect.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UIPackage.class - [JAR]

├─ org.checkerframework.checker.guieffect.qual.UIType.class - [JAR]

org.tukaani.xz.common

├─ org.tukaani.xz.common.DecoderUtil.class - [JAR]

├─ org.tukaani.xz.common.EncoderUtil.class - [JAR]

├─ org.tukaani.xz.common.StreamFlags.class - [JAR]

├─ org.tukaani.xz.common.Util.class - [JAR]

htsjdk.tribble.index.interval

├─ htsjdk.tribble.index.interval.Interval.class - [JAR]

├─ htsjdk.tribble.index.interval.IntervalIndexCreator.class - [JAR]

├─ htsjdk.tribble.index.interval.IntervalTree.class - [JAR]

├─ htsjdk.tribble.index.interval.IntervalTreeIndex.class - [JAR]

├─ htsjdk.tribble.index.interval.MutableInterval.class - [JAR]

org.apache.commons.codec.net

├─ org.apache.commons.codec.net.BCodec.class - [JAR]

├─ org.apache.commons.codec.net.PercentCodec.class - [JAR]

├─ org.apache.commons.codec.net.QCodec.class - [JAR]

├─ org.apache.commons.codec.net.QuotedPrintableCodec.class - [JAR]

├─ org.apache.commons.codec.net.RFC1522Codec.class - [JAR]

├─ org.apache.commons.codec.net.URLCodec.class - [JAR]

├─ org.apache.commons.codec.net.Utils.class - [JAR]

org.biojava.bio.seq

├─ org.biojava.bio.seq.AbstractFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.AcceptAllFilter.class - [JAR]

├─ org.biojava.bio.seq.AcceptNoneFilter.class - [JAR]

├─ org.biojava.bio.seq.ByHierarchy.class - [JAR]

├─ org.biojava.bio.seq.ByLocationMinMaxComparator.class - [JAR]

├─ org.biojava.bio.seq.ByLocationMinMaxFeatureComparator.class - [JAR]

├─ org.biojava.bio.seq.CircularView.class - [JAR]

├─ org.biojava.bio.seq.ComponentFeature.class - [JAR]

├─ org.biojava.bio.seq.DNATools.class - [JAR]

├─ org.biojava.bio.seq.Down.class - [JAR]

├─ org.biojava.bio.seq.Feature.class - [JAR]

├─ org.biojava.bio.seq.FeatureFilter.class - [JAR]

├─ org.biojava.bio.seq.FeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.FeatureHolderUtils.class - [JAR]

├─ org.biojava.bio.seq.FeatureRealizer.class - [JAR]

├─ org.biojava.bio.seq.FeatureTypes.class - [JAR]

├─ org.biojava.bio.seq.FilterUtils.class - [JAR]

├─ org.biojava.bio.seq.Frame.class - [JAR]

├─ org.biojava.bio.seq.FramedFeature.class - [JAR]

├─ org.biojava.bio.seq.GappedSequence.class - [JAR]

├─ org.biojava.bio.seq.GeneticCodes.class - [JAR]

├─ org.biojava.bio.seq.IsLeaf.class - [JAR]

├─ org.biojava.bio.seq.IsTopLevel.class - [JAR]

├─ org.biojava.bio.seq.LazyFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.MergeFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.NewSimpleAssembly.class - [JAR]

├─ org.biojava.bio.seq.NucleotideTools.class - [JAR]

├─ org.biojava.bio.seq.OptimizableFilter.class - [JAR]

├─ org.biojava.bio.seq.ProteinTools.class - [JAR]

├─ org.biojava.bio.seq.RNATools.class - [JAR]

├─ org.biojava.bio.seq.RealizingFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.RemoteFeature.class - [JAR]

├─ org.biojava.bio.seq.Sequence.class - [JAR]

├─ org.biojava.bio.seq.SequenceAnnotator.class - [JAR]

├─ org.biojava.bio.seq.SequenceFactory.class - [JAR]

├─ org.biojava.bio.seq.SequenceIterator.class - [JAR]

├─ org.biojava.bio.seq.SequenceTools.class - [JAR]

├─ org.biojava.bio.seq.SimpleAssembly.class - [JAR]

├─ org.biojava.bio.seq.SimpleComponentFeature.class - [JAR]

├─ org.biojava.bio.seq.SimpleFeatureHolder.class - [JAR]

├─ org.biojava.bio.seq.SimpleFeatureRealizer.class - [JAR]

├─ org.biojava.bio.seq.StrandParser.class - [JAR]

├─ org.biojava.bio.seq.StrandedFeature.class - [JAR]

├─ org.biojava.bio.seq.Up.class - [JAR]

javax.annotation

├─ javax.annotation.CheckForNull.class - [JAR]

├─ javax.annotation.CheckForSigned.class - [JAR]

├─ javax.annotation.CheckReturnValue.class - [JAR]

├─ javax.annotation.Detainted.class - [JAR]

├─ javax.annotation.MatchesPattern.class - [JAR]

├─ javax.annotation.Nonnegative.class - [JAR]

├─ javax.annotation.Nonnull.class - [JAR]

├─ javax.annotation.Nullable.class - [JAR]

├─ javax.annotation.OverridingMethodsMustInvokeSuper.class - [JAR]

├─ javax.annotation.ParametersAreNonnullByDefault.class - [JAR]

├─ javax.annotation.ParametersAreNullableByDefault.class - [JAR]

├─ javax.annotation.PropertyKey.class - [JAR]

├─ javax.annotation.RegEx.class - [JAR]

├─ javax.annotation.Signed.class - [JAR]

├─ javax.annotation.Syntax.class - [JAR]

├─ javax.annotation.Tainted.class - [JAR]

├─ javax.annotation.Untainted.class - [JAR]

├─ javax.annotation.WillClose.class - [JAR]

├─ javax.annotation.WillCloseWhenClosed.class - [JAR]

├─ javax.annotation.WillNotClose.class - [JAR]

htsjdk.samtools.apps

├─ htsjdk.samtools.apps.TimeChannel.class - [JAR]

├─ htsjdk.samtools.apps.TimeRandomAccessFile.class - [JAR]

org.checkerframework.checker.formatter.qual

├─ org.checkerframework.checker.formatter.qual.ConversionCategory.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.Format.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.FormatBottom.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.FormatMethod.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.InvalidFormat.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.ReturnsFormat.class - [JAR]

├─ org.checkerframework.checker.formatter.qual.UnknownFormat.class - [JAR]

org.dishevelled.bio.alignment.sam

├─ org.dishevelled.bio.alignment.sam.AbstractSamHeaderLine.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamAdapter.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamCommentHeaderLine.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamHeader.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamHeaderLine.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamHeaderReader.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamListener.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamProgramHeaderLine.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamReadGroupHeaderLine.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamReader.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamRecord.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamSequenceHeaderLine.class - [JAR]

├─ org.dishevelled.bio.alignment.sam.SamWriter.class - [JAR]

org.checkerframework.checker.units.qual

├─ org.checkerframework.checker.units.qual.A.class - [JAR]

├─ org.checkerframework.checker.units.qual.Acceleration.class - [JAR]

├─ org.checkerframework.checker.units.qual.Angle.class - [JAR]

├─ org.checkerframework.checker.units.qual.Area.class - [JAR]

├─ org.checkerframework.checker.units.qual.C.class - [JAR]

├─ org.checkerframework.checker.units.qual.Current.class - [JAR]

├─ org.checkerframework.checker.units.qual.K.class - [JAR]

├─ org.checkerframework.checker.units.qual.Length.class - [JAR]

├─ org.checkerframework.checker.units.qual.Luminance.class - [JAR]

├─ org.checkerframework.checker.units.qual.Mass.class - [JAR]

├─ org.checkerframework.checker.units.qual.MixedUnits.class - [JAR]

├─ org.checkerframework.checker.units.qual.PolyUnit.class - [JAR]

├─ org.checkerframework.checker.units.qual.Prefix.class - [JAR]

├─ org.checkerframework.checker.units.qual.Speed.class - [JAR]

├─ org.checkerframework.checker.units.qual.Substance.class - [JAR]

├─ org.checkerframework.checker.units.qual.Temperature.class - [JAR]

├─ org.checkerframework.checker.units.qual.Time.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnitsBottom.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnitsMultiple.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnitsRelations.class - [JAR]

├─ org.checkerframework.checker.units.qual.UnknownUnits.class - [JAR]

├─ org.checkerframework.checker.units.qual.cd.class - [JAR]

├─ org.checkerframework.checker.units.qual.degrees.class - [JAR]

├─ org.checkerframework.checker.units.qual.g.class - [JAR]

├─ org.checkerframework.checker.units.qual.h.class - [JAR]

├─ org.checkerframework.checker.units.qual.kg.class - [JAR]

├─ org.checkerframework.checker.units.qual.km.class - [JAR]

├─ org.checkerframework.checker.units.qual.km2.class - [JAR]

├─ org.checkerframework.checker.units.qual.kmPERh.class - [JAR]

├─ org.checkerframework.checker.units.qual.m.class - [JAR]

├─ org.checkerframework.checker.units.qual.m2.class - [JAR]

├─ org.checkerframework.checker.units.qual.mPERs.class - [JAR]

├─ org.checkerframework.checker.units.qual.mPERs2.class - [JAR]

├─ org.checkerframework.checker.units.qual.min.class - [JAR]

├─ org.checkerframework.checker.units.qual.mm.class - [JAR]

├─ org.checkerframework.checker.units.qual.mm2.class - [JAR]

├─ org.checkerframework.checker.units.qual.mol.class - [JAR]

├─ org.checkerframework.checker.units.qual.radians.class - [JAR]

├─ org.checkerframework.checker.units.qual.s.class - [JAR]

htsjdk.samtools.cram.compression

├─ htsjdk.samtools.cram.compression.BZIP2ExternalCompressor.class - [JAR]

├─ htsjdk.samtools.cram.compression.ExternalCompressor.class - [JAR]

├─ htsjdk.samtools.cram.compression.GZIPExternalCompressor.class - [JAR]

├─ htsjdk.samtools.cram.compression.LZMAExternalCompressor.class - [JAR]

├─ htsjdk.samtools.cram.compression.RANSExternalCompressor.class - [JAR]

├─ htsjdk.samtools.cram.compression.RAWExternalCompressor.class - [JAR]

htsjdk.utils

├─ htsjdk.utils.ClassFinder.class - [JAR]

├─ htsjdk.utils.ValidationUtils.class - [JAR]

ngs.itf

├─ ngs.itf.AlignmentIteratorItf.class - [JAR]

├─ ngs.itf.AlignmentItf.class - [JAR]

├─ ngs.itf.FragmentIteratorItf.class - [JAR]

├─ ngs.itf.FragmentItf.class - [JAR]

├─ ngs.itf.PileupEventIteratorItf.class - [JAR]

├─ ngs.itf.PileupEventItf.class - [JAR]

├─ ngs.itf.PileupIteratorItf.class - [JAR]

├─ ngs.itf.PileupItf.class - [JAR]

├─ ngs.itf.ReadCollectionItf.class - [JAR]

├─ ngs.itf.ReadGroupIteratorItf.class - [JAR]

├─ ngs.itf.ReadGroupItf.class - [JAR]

├─ ngs.itf.ReadIteratorItf.class - [JAR]

├─ ngs.itf.ReadItf.class - [JAR]

├─ ngs.itf.Refcount.class - [JAR]

├─ ngs.itf.ReferenceIteratorItf.class - [JAR]

├─ ngs.itf.ReferenceItf.class - [JAR]

├─ ngs.itf.ReferenceSequenceItf.class - [JAR]

├─ ngs.itf.StatisticsItf.class - [JAR]

org.checkerframework.checker.builder.qual

├─ org.checkerframework.checker.builder.qual.CalledMethods.class - [JAR]

├─ org.checkerframework.checker.builder.qual.NotCalledMethods.class - [JAR]

├─ org.checkerframework.checker.builder.qual.ReturnsReceiver.class - [JAR]

org.biojavax

├─ org.biojavax.Comment.class - [JAR]

├─ org.biojavax.CrossRef.class - [JAR]

├─ org.biojavax.CrossReferenceResolutionException.class - [JAR]

├─ org.biojavax.CrossReferenceResolver.class - [JAR]

├─ org.biojavax.DocRef.class - [JAR]

├─ org.biojavax.DocRefAuthor.class - [JAR]

├─ org.biojavax.DummyCrossReferenceResolver.class - [JAR]

├─ org.biojavax.EmptyRichAnnotation.class - [JAR]

├─ org.biojavax.Namespace.class - [JAR]

├─ org.biojavax.Note.class - [JAR]

├─ org.biojavax.RankedCrossRef.class - [JAR]

├─ org.biojavax.RankedCrossRefable.class - [JAR]

├─ org.biojavax.RankedDocRef.class - [JAR]

├─ org.biojavax.RichAnnotatable.class - [JAR]

├─ org.biojavax.RichAnnotation.class - [JAR]

├─ org.biojavax.RichObjectBuilder.class - [JAR]

├─ org.biojavax.RichObjectFactory.class - [JAR]

├─ org.biojavax.SimpleComment.class - [JAR]

├─ org.biojavax.SimpleCrossRef.class - [JAR]

├─ org.biojavax.SimpleDocRef.class - [JAR]

├─ org.biojavax.SimpleDocRefAuthor.class - [JAR]

├─ org.biojavax.SimpleNamespace.class - [JAR]

├─ org.biojavax.SimpleNote.class - [JAR]

├─ org.biojavax.SimpleRankedCrossRef.class - [JAR]

├─ org.biojavax.SimpleRankedDocRef.class - [JAR]

├─ org.biojavax.SimpleRichAnnotation.class - [JAR]

├─ org.biojavax.SimpleRichObjectBuilder.class - [JAR]

org.dishevelled.bio.variant.ann

├─ org.dishevelled.bio.variant.ann.SnpEffVariantAnnotation.class - [JAR]

javax.annotation.concurrent

├─ javax.annotation.concurrent.GuardedBy.class - [JAR]

├─ javax.annotation.concurrent.Immutable.class - [JAR]

├─ javax.annotation.concurrent.NotThreadSafe.class - [JAR]

├─ javax.annotation.concurrent.ThreadSafe.class - [JAR]

org.checkerframework.common.reflection.qual

├─ org.checkerframework.common.reflection.qual.ClassBound.class - [JAR]

├─ org.checkerframework.common.reflection.qual.ClassVal.class - [JAR]

├─ org.checkerframework.common.reflection.qual.ClassValBottom.class - [JAR]

├─ org.checkerframework.common.reflection.qual.ForName.class - [JAR]

├─ org.checkerframework.common.reflection.qual.GetClass.class - [JAR]

├─ org.checkerframework.common.reflection.qual.GetConstructor.class - [JAR]

├─ org.checkerframework.common.reflection.qual.GetMethod.class - [JAR]

├─ org.checkerframework.common.reflection.qual.Invoke.class - [JAR]

├─ org.checkerframework.common.reflection.qual.MethodVal.class - [JAR]

├─ org.checkerframework.common.reflection.qual.MethodValBottom.class - [JAR]

├─ org.checkerframework.common.reflection.qual.NewInstance.class - [JAR]

├─ org.checkerframework.common.reflection.qual.UnknownClass.class - [JAR]

├─ org.checkerframework.common.reflection.qual.UnknownMethod.class - [JAR]

org.biojava.bio.seq.io.game

├─ org.biojava.bio.seq.io.game.ElementRecognizer.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEAnnotationHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEAspectPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEDbxrefPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEDescriptionPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEFeatureCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEFeatureSetHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEFeatureSetPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEFeatureSpanHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEGenePropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEMapPosPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMENameCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMENamePropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMEResiduesPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMESeqPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMESeqRelPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMESpanPropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMETranscriptCallbackItf.class - [JAR]

├─ org.biojava.bio.seq.io.game.GAMETypePropHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.SequenceContentHandlerBase.class - [JAR]

├─ org.biojava.bio.seq.io.game.StAXFeatureHandler.class - [JAR]

├─ org.biojava.bio.seq.io.game.StAXHandlerFactory.class - [JAR]

├─ org.biojava.bio.seq.io.game.StAXPropertyHandler.class - [JAR]

org.apache.commons.compress.compressors.zstandard

├─ org.apache.commons.compress.compressors.zstandard.ZstdCompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.zstandard.ZstdCompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.zstandard.ZstdUtils.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Absent.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.AbstractIterator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Ascii.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.CaseFormat.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.CharMatcher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Charsets.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.CommonMatcher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.CommonPattern.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Converter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Defaults.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Enums.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Equivalence.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.ExtraObjectsMethodsForWeb.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.FinalizablePhantomReference.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.FinalizableReference.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.FinalizableReferenceQueue.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.FinalizableSoftReference.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.FinalizableWeakReference.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Function.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.FunctionalEquivalence.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Functions.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Java8Compatibility.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.JdkPattern.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Joiner.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.MoreObjects.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.NullnessCasts.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Objects.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Optional.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.PairwiseEquivalence.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.PatternCompiler.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Platform.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Preconditions.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Predicate.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Predicates.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Present.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.SmallCharMatcher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Splitter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.StandardSystemProperty.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Stopwatch.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Strings.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Supplier.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Suppliers.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Throwables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Ticker.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Utf8.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.Verify.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.VerifyException.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.base.package-info.class - [JAR]

htsjdk.variant.bcf2

├─ htsjdk.variant.bcf2.BCF2Codec.class - [JAR]

├─ htsjdk.variant.bcf2.BCF2Decoder.class - [JAR]

├─ htsjdk.variant.bcf2.BCF2GenotypeFieldDecoders.class - [JAR]

├─ htsjdk.variant.bcf2.BCF2LazyGenotypesDecoder.class - [JAR]

├─ htsjdk.variant.bcf2.BCF2Type.class - [JAR]

├─ htsjdk.variant.bcf2.BCF2Utils.class - [JAR]

├─ htsjdk.variant.bcf2.BCFVersion.class - [JAR]

htsjdk.tribble

├─ htsjdk.tribble.AbstractFeatureCodec.class - [JAR]

├─ htsjdk.tribble.AbstractFeatureReader.class - [JAR]

├─ htsjdk.tribble.AsciiFeatureCodec.class - [JAR]

├─ htsjdk.tribble.BinaryFeatureCodec.class - [JAR]

├─ htsjdk.tribble.CloseableTribbleIterator.class - [JAR]

├─ htsjdk.tribble.Feature.class - [JAR]

├─ htsjdk.tribble.FeatureCodec.class - [JAR]

├─ htsjdk.tribble.FeatureCodecHeader.class - [JAR]

├─ htsjdk.tribble.FeatureReader.class - [JAR]

├─ htsjdk.tribble.MutableFeature.class - [JAR]

├─ htsjdk.tribble.NameAwareCodec.class - [JAR]

├─ htsjdk.tribble.SimpleFeature.class - [JAR]

├─ htsjdk.tribble.TabixFeatureReader.class - [JAR]

├─ htsjdk.tribble.Tribble.class - [JAR]

├─ htsjdk.tribble.TribbleException.class - [JAR]

├─ htsjdk.tribble.TribbleIndexedFeatureReader.class - [JAR]

org.biojava.bio.search

├─ org.biojava.bio.search.BioMatcher.class - [JAR]

├─ org.biojava.bio.search.BioPattern.class - [JAR]

├─ org.biojava.bio.search.BlastLikeSearchFilter.class - [JAR]

├─ org.biojava.bio.search.FilterTest.class - [JAR]

├─ org.biojava.bio.search.FilteringContentHandler.class - [JAR]

├─ org.biojava.bio.search.KnuthMorrisPrattSearch.class - [JAR]

├─ org.biojava.bio.search.MaxMismatchMatcher.class - [JAR]

├─ org.biojava.bio.search.MaxMismatchPattern.class - [JAR]

├─ org.biojava.bio.search.SearchBuilder.class - [JAR]

├─ org.biojava.bio.search.SearchContentAdapter.class - [JAR]

├─ org.biojava.bio.search.SearchContentFilter.class - [JAR]

├─ org.biojava.bio.search.SearchContentHandler.class - [JAR]

├─ org.biojava.bio.search.SearchContentHandlerDebugger.class - [JAR]

├─ org.biojava.bio.search.SeqContentMatcher.class - [JAR]

├─ org.biojava.bio.search.SeqContentPattern.class - [JAR]

├─ org.biojava.bio.search.SeqSimilaritySearchHit.class - [JAR]

├─ org.biojava.bio.search.SeqSimilaritySearchResult.class - [JAR]

├─ org.biojava.bio.search.SeqSimilaritySearchSubHit.class - [JAR]

├─ org.biojava.bio.search.SeqSimilaritySearcher.class - [JAR]

├─ org.biojava.bio.search.SequenceDBSearchHit.class - [JAR]

├─ org.biojava.bio.search.SequenceDBSearchResult.class - [JAR]

├─ org.biojava.bio.search.SequenceDBSearchSubHit.class - [JAR]

├─ org.biojava.bio.search.SimpleSeqSimilaritySearchHit.class - [JAR]

├─ org.biojava.bio.search.SimpleSeqSimilaritySearchResult.class - [JAR]

├─ org.biojava.bio.search.SimpleSeqSimilaritySearchSubHit.class - [JAR]

org.apache.commons.codec.digest

├─ org.apache.commons.codec.digest.B64.class - [JAR]

├─ org.apache.commons.codec.digest.Crypt.class - [JAR]

├─ org.apache.commons.codec.digest.DigestUtils.class - [JAR]

├─ org.apache.commons.codec.digest.HmacAlgorithms.class - [JAR]

├─ org.apache.commons.codec.digest.HmacUtils.class - [JAR]

├─ org.apache.commons.codec.digest.Md5Crypt.class - [JAR]

├─ org.apache.commons.codec.digest.MessageDigestAlgorithms.class - [JAR]

├─ org.apache.commons.codec.digest.MurmurHash2.class - [JAR]

├─ org.apache.commons.codec.digest.MurmurHash3.class - [JAR]

├─ org.apache.commons.codec.digest.PureJavaCrc32.class - [JAR]

├─ org.apache.commons.codec.digest.PureJavaCrc32C.class - [JAR]

├─ org.apache.commons.codec.digest.Sha2Crypt.class - [JAR]

├─ org.apache.commons.codec.digest.UnixCrypt.class - [JAR]

├─ org.apache.commons.codec.digest.XXHash32.class - [JAR]

org.tukaani.xz.simple

├─ org.tukaani.xz.simple.ARM.class - [JAR]

├─ org.tukaani.xz.simple.ARMThumb.class - [JAR]

├─ org.tukaani.xz.simple.IA64.class - [JAR]

├─ org.tukaani.xz.simple.PowerPC.class - [JAR]

├─ org.tukaani.xz.simple.SPARC.class - [JAR]

├─ org.tukaani.xz.simple.SimpleFilter.class - [JAR]

├─ org.tukaani.xz.simple.X86.class - [JAR]

org.apache.commons.compress.compressors.z

├─ org.apache.commons.compress.compressors.z.ZCompressorInputStream.class - [JAR]

org.biojavax.utils

├─ org.biojavax.utils.CRC64Checksum.class - [JAR]

├─ org.biojavax.utils.StringTools.class - [JAR]

├─ org.biojavax.utils.XMLTools.class - [JAR]

org.biojava.naming

├─ org.biojava.naming.ObdaContext.class - [JAR]

├─ org.biojava.naming.ObdaInitialContextFactory.class - [JAR]

├─ org.biojava.naming.ObdaUriParser.class - [JAR]

htsjdk.samtools.liftover

├─ htsjdk.samtools.liftover.Chain.class - [JAR]

├─ htsjdk.samtools.liftover.LiftOver.class - [JAR]

htsjdk.samtools.cram.io

├─ htsjdk.samtools.cram.io.BitInputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.BitOutputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.CRC32InputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.CRC32OutputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.CountingInputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.CramInt.class - [JAR]

├─ htsjdk.samtools.cram.io.CramIntArray.class - [JAR]

├─ htsjdk.samtools.cram.io.DefaultBitInputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.DefaultBitOutputStream.class - [JAR]

├─ htsjdk.samtools.cram.io.ITF8.class - [JAR]

├─ htsjdk.samtools.cram.io.InputStreamUtils.class - [JAR]

├─ htsjdk.samtools.cram.io.LTF8.class - [JAR]

org.biojavax.bio.taxa

├─ org.biojavax.bio.taxa.NCBITaxon.class - [JAR]

├─ org.biojavax.bio.taxa.SimpleNCBITaxon.class - [JAR]

├─ org.biojavax.bio.taxa.SimpleNCBITaxonName.class - [JAR]

htsjdk.variant.vcf

├─ htsjdk.variant.vcf.AbstractVCFCodec.class - [JAR]

├─ htsjdk.variant.vcf.VCF3Codec.class - [JAR]

├─ htsjdk.variant.vcf.VCF3Parser.class - [JAR]

├─ htsjdk.variant.vcf.VCF4Parser.class - [JAR]

├─ htsjdk.variant.vcf.VCFAltHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFCodec.class - [JAR]

├─ htsjdk.variant.vcf.VCFCompoundHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFConstants.class - [JAR]

├─ htsjdk.variant.vcf.VCFContigHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFEncoder.class - [JAR]

├─ htsjdk.variant.vcf.VCFFileReader.class - [JAR]

├─ htsjdk.variant.vcf.VCFFilterHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFFormatHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFHeader.class - [JAR]

├─ htsjdk.variant.vcf.VCFHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFHeaderLineCount.class - [JAR]

├─ htsjdk.variant.vcf.VCFHeaderLineTranslator.class - [JAR]

├─ htsjdk.variant.vcf.VCFHeaderLineType.class - [JAR]

├─ htsjdk.variant.vcf.VCFHeaderVersion.class - [JAR]

├─ htsjdk.variant.vcf.VCFIDHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFInfoHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFIterator.class - [JAR]

├─ htsjdk.variant.vcf.VCFIteratorBuilder.class - [JAR]

├─ htsjdk.variant.vcf.VCFLineParser.class - [JAR]

├─ htsjdk.variant.vcf.VCFMetaHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFPassThruTextTransformer.class - [JAR]

├─ htsjdk.variant.vcf.VCFPedigreeHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFPercentEncodedTextTransformer.class - [JAR]

├─ htsjdk.variant.vcf.VCFReader.class - [JAR]

├─ htsjdk.variant.vcf.VCFRecordCodec.class - [JAR]

├─ htsjdk.variant.vcf.VCFSampleHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFSimpleHeaderLine.class - [JAR]

├─ htsjdk.variant.vcf.VCFStandardHeaderLines.class - [JAR]

├─ htsjdk.variant.vcf.VCFTextTransformer.class - [JAR]

├─ htsjdk.variant.vcf.VCFUtils.class - [JAR]

org.apache.commons.compress.compressors

├─ org.apache.commons.compress.compressors.CompressorException.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorInputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorOutputStream.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorStreamFactory.class - [JAR]

├─ org.apache.commons.compress.compressors.CompressorStreamProvider.class - [JAR]

├─ org.apache.commons.compress.compressors.FileNameUtil.class - [JAR]

htsjdk.samtools.util.htsget

├─ htsjdk.samtools.util.htsget.HtsgetClass.class - [JAR]

├─ htsjdk.samtools.util.htsget.HtsgetErrorResponse.class - [JAR]

├─ htsjdk.samtools.util.htsget.HtsgetFormat.class - [JAR]

├─ htsjdk.samtools.util.htsget.HtsgetMalformedResponseException.class - [JAR]

├─ htsjdk.samtools.util.htsget.HtsgetRequest.class - [JAR]

├─ htsjdk.samtools.util.htsget.HtsgetRequestField.class - [JAR]

├─ htsjdk.samtools.util.htsget.HtsgetResponse.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.HostAndPort.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.HostSpecifier.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.HttpHeaders.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.InetAddresses.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.InternetDomainName.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.MediaType.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.PercentEscaper.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.UrlEscapers.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.net.package-info.class - [JAR]

org.xerial.snappy.pool

├─ org.xerial.snappy.pool.BufferPool.class - [JAR]

├─ org.xerial.snappy.pool.CachingBufferPool.class - [JAR]

├─ org.xerial.snappy.pool.DefaultPoolFactory.class - [JAR]

├─ org.xerial.snappy.pool.DirectByteBuffers.class - [JAR]

├─ org.xerial.snappy.pool.QuiescentBufferPool.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.AbstractInvocationHandler.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.ClassPath.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.ImmutableTypeToInstanceMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.Invokable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.MutableTypeToInstanceMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.Parameter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.Reflection.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.TypeCapture.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.TypeParameter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.TypeResolver.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.TypeToInstanceMap.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.TypeToken.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.TypeVisitor.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.Types.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.reflect.package-info.class - [JAR]

org.biojava.bio.chromatogram

├─ org.biojava.bio.chromatogram.AbstractChromatogram.class - [JAR]

├─ org.biojava.bio.chromatogram.Chromatogram.class - [JAR]

├─ org.biojava.bio.chromatogram.ChromatogramFactory.class - [JAR]

├─ org.biojava.bio.chromatogram.ChromatogramTools.class - [JAR]

├─ org.biojava.bio.chromatogram.SimpleChromatogram.class - [JAR]

├─ org.biojava.bio.chromatogram.UnsupportedChromatogramFormatException.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.BigDecimalMath.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.BigIntegerMath.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.DoubleMath.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.DoubleUtils.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.IntMath.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.LinearTransformation.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.LongMath.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.MathPreconditions.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.PairedStats.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.PairedStatsAccumulator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.Quantiles.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.Stats.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.StatsAccumulator.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.ToDoubleRounder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.math.package-info.class - [JAR]

org.checkerframework.checker.i18n.qual

├─ org.checkerframework.checker.i18n.qual.LocalizableKey.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.LocalizableKeyBottom.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.Localized.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.UnknownLocalizableKey.class - [JAR]

├─ org.checkerframework.checker.i18n.qual.UnknownLocalized.class - [JAR]

ngs

├─ ngs.Alignment.class - [JAR]

├─ ngs.AlignmentIterator.class - [JAR]

├─ ngs.ErrorMsg.class - [JAR]

├─ ngs.Fragment.class - [JAR]

├─ ngs.FragmentIterator.class - [JAR]

├─ ngs.Package.class - [JAR]

├─ ngs.Pileup.class - [JAR]

├─ ngs.PileupEvent.class - [JAR]

├─ ngs.PileupEventIterator.class - [JAR]

├─ ngs.PileupIterator.class - [JAR]

├─ ngs.Read.class - [JAR]

├─ ngs.ReadCollection.class - [JAR]

├─ ngs.ReadGroup.class - [JAR]

├─ ngs.ReadGroupIterator.class - [JAR]

├─ ngs.ReadIterator.class - [JAR]

├─ ngs.Reference.class - [JAR]

├─ ngs.ReferenceIterator.class - [JAR]

├─ ngs.ReferenceSequence.class - [JAR]

├─ ngs.Statistics.class - [JAR]

htsjdk.samtools.cram.structure

├─ htsjdk.samtools.cram.structure.AlignmentContext.class - [JAR]

├─ htsjdk.samtools.cram.structure.AlignmentSpan.class - [JAR]

├─ htsjdk.samtools.cram.structure.CRAMCompressionRecord.class - [JAR]

├─ htsjdk.samtools.cram.structure.CRAMEncodingStrategy.class - [JAR]

├─ htsjdk.samtools.cram.structure.CRAMRecordReadFeatures.class - [JAR]

├─ htsjdk.samtools.cram.structure.CompressionHeader.class - [JAR]

├─ htsjdk.samtools.cram.structure.CompressionHeaderEncodingMap.class - [JAR]

├─ htsjdk.samtools.cram.structure.CompressorCache.class - [JAR]

├─ htsjdk.samtools.cram.structure.Container.class - [JAR]

├─ htsjdk.samtools.cram.structure.ContainerHeader.class - [JAR]

├─ htsjdk.samtools.cram.structure.CramHeader.class - [JAR]

├─ htsjdk.samtools.cram.structure.DataSeries.class - [JAR]

├─ htsjdk.samtools.cram.structure.DataSeriesType.class - [JAR]

├─ htsjdk.samtools.cram.structure.EncodingDescriptor.class - [JAR]

├─ htsjdk.samtools.cram.structure.EncodingID.class - [JAR]

├─ htsjdk.samtools.cram.structure.ReadTag.class - [JAR]

├─ htsjdk.samtools.cram.structure.Slice.class - [JAR]

├─ htsjdk.samtools.cram.structure.SliceBlocks.class - [JAR]

├─ htsjdk.samtools.cram.structure.SliceBlocksReadStreams.class - [JAR]

├─ htsjdk.samtools.cram.structure.SliceBlocksWriteStreams.class - [JAR]

├─ htsjdk.samtools.cram.structure.SubstitutionBase.class - [JAR]

├─ htsjdk.samtools.cram.structure.SubstitutionMatrix.class - [JAR]

org.biojava.bio.annodb

├─ org.biojava.bio.annodb.AnnotationDB.class - [JAR]

├─ org.biojava.bio.annodb.EmptyAnnotationDB.class - [JAR]

├─ org.biojava.bio.annodb.IndexedAnnotationDB.class - [JAR]

├─ org.biojava.bio.annodb.LazyFilteredAnnotationDB.class - [JAR]

├─ org.biojava.bio.annodb.LazySearchedAnnotationDB.class - [JAR]

├─ org.biojava.bio.annodb.MergingAnnotationDB.class - [JAR]

├─ org.biojava.bio.annodb.SimpleAnnotationDB.class - [JAR]

org.biojava.ontology.obo

├─ org.biojava.ontology.obo.NestedValue.class - [JAR]

├─ org.biojava.ontology.obo.OboFileEventListener.class - [JAR]

├─ org.biojava.ontology.obo.OboFileHandler.class - [JAR]

├─ org.biojava.ontology.obo.OboFileParser.class - [JAR]

org.apache.commons.codec.language.bm

├─ org.apache.commons.codec.language.bm.BeiderMorseEncoder.class - [JAR]

├─ org.apache.commons.codec.language.bm.Lang.class - [JAR]

├─ org.apache.commons.codec.language.bm.Languages.class - [JAR]

├─ org.apache.commons.codec.language.bm.NameType.class - [JAR]

├─ org.apache.commons.codec.language.bm.PhoneticEngine.class - [JAR]

├─ org.apache.commons.codec.language.bm.ResourceConstants.class - [JAR]

├─ org.apache.commons.codec.language.bm.Rule.class - [JAR]

├─ org.apache.commons.codec.language.bm.RuleType.class - [JAR]

org.apache.commons.compress.harmony.archive.internal.nls

├─ org.apache.commons.compress.harmony.archive.internal.nls.Messages.class - [JAR]

org.biojava.directory

├─ org.biojava.directory.OBDARegistryParser.class - [JAR]

├─ org.biojava.directory.ProviderNotFoundException.class - [JAR]

├─ org.biojava.directory.Registry.class - [JAR]

├─ org.biojava.directory.RegistryConfiguration.class - [JAR]

├─ org.biojava.directory.RegistryException.class - [JAR]

├─ org.biojava.directory.SequenceDBProvider.class - [JAR]

├─ org.biojava.directory.SystemRegistry.class - [JAR]

org.apache.commons.compress.harmony.unpack200

├─ org.apache.commons.compress.harmony.unpack200.Archive.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.AttrDefinitionBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.AttributeLayout.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.AttributeLayoutMap.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.BandSet.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.BcBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.ClassBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.CpBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.FileBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.IMatcher.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.IcBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.IcTuple.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.MetadataBandGroup.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.NewAttributeBands.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.Pack200UnpackerAdapter.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.Segment.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.SegmentConstantPool.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.SegmentConstantPoolArrayCache.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.SegmentHeader.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.SegmentOptions.class - [JAR]

├─ org.apache.commons.compress.harmony.unpack200.SegmentUtils.class - [JAR]

org.biojava.bio.program.hmmer

├─ org.biojava.bio.program.hmmer.FullHmmerProfileHMM.class - [JAR]

├─ org.biojava.bio.program.hmmer.HmmerProfileHMM.class - [JAR]

├─ org.biojava.bio.program.hmmer.HmmerProfileParser.class - [JAR]

├─ org.biojava.bio.program.hmmer.ProfileEmissionState.class - [JAR]

org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.AbstractByteHasher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.AbstractCompositeHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.AbstractHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.AbstractHasher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.AbstractNonStreamingHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.AbstractStreamingHasher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.BloomFilter.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.BloomFilterStrategies.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.ChecksumHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Crc32cHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.ElementTypesAreNonnullByDefault.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.FarmHashFingerprint64.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Fingerprint2011.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Funnel.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Funnels.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.HashCode.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.HashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Hasher.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Hashing.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.HashingInputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.HashingOutputStream.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.ImmutableSupplier.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Java8Compatibility.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.LittleEndianByteArray.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.LongAddable.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.LongAddables.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.LongAdder.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.MacHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.MessageDigestHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Murmur3_128HashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Murmur3_32HashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.ParametricNullness.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.PrimitiveSink.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.SipHashFunction.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.Striped64.class - [JAR]

├─ org.dishevelled.bio.compress.hdfs.shaded.com.google.common.hash.package-info.class - [JAR]

org.biojava.bio.program.tagvalue

├─ org.biojava.bio.program.tagvalue.AbstractWrapper.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Aggregator.class - [JAR]

├─ org.biojava.bio.program.tagvalue.AnnotationBuilder.class - [JAR]

├─ org.biojava.bio.program.tagvalue.BoundaryFinder.class - [JAR]

├─ org.biojava.bio.program.tagvalue.ChangeTable.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Echo.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Formats.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Index2Model.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Indexer.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Indexer2.class - [JAR]

├─ org.biojava.bio.program.tagvalue.LineSplitParser.class - [JAR]

├─ org.biojava.bio.program.tagvalue.MultiTagger.class - [JAR]

├─ org.biojava.bio.program.tagvalue.Parser.class - [JAR]

├─ org.biojava.bio.program.tagvalue.ParserListener.class - [JAR]

├─ org.biojava.bio.program.tagvalue.PropertyChanger.class - [JAR]

├─ org.biojava.bio.program.tagvalue.RegexChanger.class - [JAR]

├─ org.biojava.bio.program.tagvalue.RegexFieldFinder.class - [JAR]

├─ org.biojava.bio.program.tagvalue.RegexParser.class - [JAR]

├─ org.biojava.bio.program.tagvalue.RegexSplitter.class - [JAR]

├─ org.biojava.bio.program.tagvalue.SimpleTagValueWrapper.class - [JAR]

├─ org.biojava.bio.program.tagvalue.StateMachine.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagDelegator.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagDropper.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagMapper.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagRenamer.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagValue.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagValueContext.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagValueListener.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagValueParser.class - [JAR]

├─ org.biojava.bio.program.tagvalue.TagValueWrapper.class - [JAR]

├─ org.biojava.bio.program.tagvalue.ValueChanger.class - [JAR]

org.checkerframework.checker.lock.qual

├─ org.checkerframework.checker.lock.qual.EnsuresLockHeld.class - [JAR]

├─ org.checkerframework.checker.lock.qual.EnsuresLockHeldIf.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardSatisfied.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardedBy.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardedByBottom.class - [JAR]

├─ org.checkerframework.checker.lock.qual.GuardedByUnknown.class - [JAR]

├─ org.checkerframework.checker.lock.qual.Holding.class - [JAR]

├─ org.checkerframework.checker.lock.qual.LockHeld.class - [JAR]

├─ org.checkerframework.checker.lock.qual.LockPossiblyHeld.class - [JAR]

├─ org.checkerframework.checker.lock.qual.LockingFree.class - [JAR]

├─ org.checkerframework.checker.lock.qual.MayReleaseLocks.class - [JAR]

├─ org.checkerframework.checker.lock.qual.ReleasesNoLocks.class - [JAR]

org.biojavax.bio.alignment.blast

├─ org.biojavax.bio.alignment.blast.RemoteQBlastAlignmentProperties.class - [JAR]

├─ org.biojavax.bio.alignment.blast.RemoteQBlastOutputFormat.class - [JAR]

├─ org.biojavax.bio.alignment.blast.RemoteQBlastOutputProperties.class - [JAR]

├─ org.biojavax.bio.alignment.blast.RemoteQBlastService.class - [JAR]

org.biojava.stats.svm

├─ org.biojava.stats.svm.AbstractSVMClassifierModel.class - [JAR]

├─ org.biojava.stats.svm.AbstractSVMTarget.class - [JAR]

├─ org.biojava.stats.svm.CachingKernel.class - [JAR]

├─ org.biojava.stats.svm.DiagonalAddKernel.class - [JAR]

├─ org.biojava.stats.svm.DiagonalCachingKernel.class - [JAR]

├─ org.biojava.stats.svm.ItemValue.class - [JAR]

├─ org.biojava.stats.svm.LinearKernel.class - [JAR]

├─ org.biojava.stats.svm.ListSumKernel.class - [JAR]

├─ org.biojava.stats.svm.NestedKernel.class - [JAR]

├─ org.biojava.stats.svm.NormalizingKernel.class - [JAR]

├─ org.biojava.stats.svm.PolynomialKernel.class - [JAR]

├─ org.biojava.stats.svm.RadialBaseKernel.class - [JAR]

├─ org.biojava.stats.svm.SMORegressionTrainer.class - [JAR]

├─ org.biojava.stats.svm.SMOTrainer.class - [JAR]

├─ org.biojava.stats.svm.SVMClassifierModel.class - [JAR]

├─ org.biojava.stats.svm.SVMKernel.class - [JAR]

├─ org.biojava.stats.svm.SVMRegressionModel.class - [JAR]

├─ org.biojava.stats.svm.SVMTarget.class - [JAR]

├─ org.biojava.stats.svm.SigmoidKernel.class - [JAR]

├─ org.biojava.stats.svm.SimpleItemValue.class - [JAR]

├─ org.biojava.stats.svm.SimpleSVMClassifierModel.class - [JAR]

├─ org.biojava.stats.svm.SimpleSVMTarget.class - [JAR]

├─ org.biojava.stats.svm.SparseVector.class - [JAR]

├─ org.biojava.stats.svm.TrainingContext.class - [JAR]

├─ org.biojava.stats.svm.TrainingEvent.class - [JAR]

├─ org.biojava.stats.svm.TrainingListener.class - [JAR]

org.checkerframework.checker.signature.qual

├─ org.checkerframework.checker.signature.qual.ArrayWithoutPackage.class - [JAR]

├─ org.checkerframework.checker.signature.qual.BinaryName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.BinaryNameOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.BinaryNameWithoutPackage.class - [JAR]

├─ org.checkerframework.checker.signature.qual.CanonicalName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.CanonicalNameAndBinaryName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.CanonicalNameOrEmpty.class - [JAR]

├─ org.checkerframework.checker.signature.qual.CanonicalNameOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.ClassGetName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.ClassGetSimpleName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.DotSeparatedIdentifiers.class - [JAR]

├─ org.checkerframework.checker.signature.qual.DotSeparatedIdentifiersOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FieldDescriptor.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FieldDescriptorForPrimitive.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FieldDescriptorWithoutPackage.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FqBinaryName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.FullyQualifiedName.class - [JAR]

├─ org.checkerframework.checker.signature.qual.Identifier.class - [JAR]

├─ org.checkerframework.checker.signature.qual.IdentifierOrPrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.InternalForm.class - [JAR]

├─ org.checkerframework.checker.signature.qual.MethodDescriptor.class - [JAR]

├─ org.checkerframework.checker.signature.qual.PolySignature.class - [JAR]

├─ org.checkerframework.checker.signature.qual.PrimitiveType.class - [JAR]

├─ org.checkerframework.checker.signature.qual.SignatureBottom.class - [JAR]

├─ org.checkerframework.checker.signature.qual.SignatureUnknown.class - [JAR]

htsjdk.samtools.cram.encoding.reader

├─ htsjdk.samtools.cram.encoding.reader.CramRecordReader.class - [JAR]

├─ htsjdk.samtools.cram.encoding.reader.DataSeriesReader.class - [JAR]

org.biojava.bio.program.homologene

├─ org.biojava.bio.program.homologene.AbstractOrthoPairCollection.class - [JAR]

├─ org.biojava.bio.program.homologene.AbstractOrthoPairSet.class - [JAR]

├─ org.biojava.bio.program.homologene.AbstractOrthologueSet.class - [JAR]

├─ org.biojava.bio.program.homologene.DuplicateTaxonException.class - [JAR]

├─ org.biojava.bio.program.homologene.HomologeneBuilder.class - [JAR]

├─ org.biojava.bio.program.homologene.HomologeneDB.class - [JAR]

├─ org.biojava.bio.program.homologene.HomologeneTools.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthoPair.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthoPairCollection.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthoPairFilter.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthoPairSet.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthoPairSetFilter.class - [JAR]

├─ org.biojava.bio.program.homologene.Orthologue.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthologueFilter.class - [JAR]

├─ org.biojava.bio.program.homologene.OrthologueSet.class - [JAR]

├─ org.biojava.bio.program.homologene.SimilarityType.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleHomologeneBuilder.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleHomologeneDB.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleOrthoPair.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleOrthoPairCollection.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleOrthoPairSet.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleOrthologue.class - [JAR]

├─ org.biojava.bio.program.homologene.SimpleOrthologueSet.class - [JAR]

├─ org.biojava.bio.program.homologene.Taxon.class - [JAR]

org.dishevelled.bio.feature.gff3

├─ org.dishevelled.bio.feature.gff3.Gff3Listener.class - [JAR]

├─ org.dishevelled.bio.feature.gff3.Gff3Reader.class - [JAR]

├─ org.dishevelled.bio.feature.gff3.Gff3Record.class - [JAR]

├─ org.dishevelled.bio.feature.gff3.Gff3Writer.class - [JAR]

org.biojava.bio.program.scf

├─ org.biojava.bio.program.scf.SCF.class - [JAR]

com.google.errorprone.annotations.concurrent

├─ com.google.errorprone.annotations.concurrent.GuardedBy.class - [JAR]

├─ com.google.errorprone.annotations.concurrent.LazyInit.class - [JAR]

├─ com.google.errorprone.annotations.concurrent.LockMethod.class - [JAR]

├─ com.google.errorprone.annotations.concurrent.UnlockMethod.class - [JAR]

org.biojava.bio.program.xml

├─ org.biojava.bio.program.xml.BaseXMLWriter.class - [JAR]

├─ org.biojava.bio.program.xml.SimpleXMLEmitter.class - [JAR]

org.dishevelled.compress

├─ org.dishevelled.compress.BgzfUtils.class - [JAR]

├─ org.dishevelled.compress.Compress.class - [JAR]

├─ org.dishevelled.compress.Readers.class - [JAR]

├─ org.dishevelled.compress.Sinks.class - [JAR]

├─ org.dishevelled.compress.Sources.class - [JAR]

├─ org.dishevelled.compress.Writers.class - [JAR]

├─ org.dishevelled.compress.ZstdUtils.class - [JAR]

org.biojava.bio.dist

├─ org.biojava.bio.dist.AbstractDistribution.class - [JAR]

├─ org.biojava.bio.dist.AbstractOrderNDistribution.class - [JAR]

├─ org.biojava.bio.dist.Count.class - [JAR]

├─ org.biojava.bio.dist.Distribution.class - [JAR]

├─ org.biojava.bio.dist.DistributionFactory.class - [JAR]

├─ org.biojava.bio.dist.DistributionTools.class - [JAR]

├─ org.biojava.bio.dist.DistributionTrainer.class - [JAR]

├─ org.biojava.bio.dist.DistributionTrainerContext.class - [JAR]

├─ org.biojava.bio.dist.GapDistribution.class - [JAR]

├─ org.biojava.bio.dist.GeneralNthOrderDistribution.class - [JAR]

├─ org.biojava.bio.dist.IgnoreCountsTrainer.class - [JAR]

├─ org.biojava.bio.dist.IndexedCount.class - [JAR]

├─ org.biojava.bio.dist.IndexedNthOrderDistribution.class - [JAR]

├─ org.biojava.bio.dist.OrderNDistribution.class - [JAR]

├─ org.biojava.bio.dist.OrderNDistributionFactory.class - [JAR]

├─ org.biojava.bio.dist.PairDistribution.class - [JAR]

├─ org.biojava.bio.dist.SimpleDistribution.class - [JAR]

├─ org.biojava.bio.dist.SimpleDistributionTrainer.class - [JAR]

├─ org.biojava.bio.dist.SimpleDistributionTrainerContext.class - [JAR]

├─ org.biojava.bio.dist.TranslatedDistribution.class - [JAR]

├─ org.biojava.bio.dist.UniformDistribution.class - [JAR]

├─ org.biojava.bio.dist.UntrainableDistribution.class - [JAR]

├─ org.biojava.bio.dist.XMLDistributionReader.class - [JAR]

├─ org.biojava.bio.dist.XMLDistributionWriter.class - [JAR]

htsjdk.samtools.cram

├─ htsjdk.samtools.cram.BAIEntry.class - [JAR]

├─ htsjdk.samtools.cram.CRAIEntry.class - [JAR]

├─ htsjdk.samtools.cram.CRAIIndex.class - [JAR]

├─ htsjdk.samtools.cram.CRAIIndexMerger.class - [JAR]

├─ htsjdk.samtools.cram.CRAMException.class - [JAR]

org.checkerframework.checker.compilermsgs.qual

├─ org.checkerframework.checker.compilermsgs.qual.CompilerMessageKey.class - [JAR]

├─ org.checkerframework.checker.compilermsgs.qual.CompilerMessageKeyBottom.class - [JAR]

├─ org.checkerframework.checker.compilermsgs.qual.UnknownCompilerMessageKey.class - [JAR]

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